; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G001640 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G001640
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCHCH domain-containing protein
Genome locationCmo_Chr12:1078005..1080265
RNA-Seq ExpressionCmoCh12G001640
SyntenyCmoCh12G001640
Gene Ontology termsGO:0007005 - mitochondrion organization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR009069 - Cysteine alpha-hairpin motif superfamily
IPR010625 - CHCH


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585350.1 hypothetical protein SDJN03_18083, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4298.88Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

KAG7020260.1 hypothetical protein SDJN02_16943, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-4298.88Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGS TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

XP_022951313.1 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like [Cucurbita moschata]1.3e-43100Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

XP_023001881.1 uncharacterized protein C6C3.02c-like [Cucurbita maxima]9.0e-4297.75Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSS TPIANNPGGS TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

XP_023537001.1 uncharacterized protein C6C3.02c-like isoform X1 [Cucurbita pepo subsp. pepo]5.3e-4297.75Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        GLAFGTGSAVAHRAVDAVMGPRVIQHE VDSSSSPTPIANNPGGS TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

TrEMBL top hitse value%identityAlignment
A0A0A0LNY2 CHCH domain-containing protein1.4e-3278.89Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTP-IANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        G+AFGTGSAVAHRAVDAVMGPR IQHE VDSS+S  P +A+N GGS  C VQSK+F+DCLNHYG+DI KCQFYLDML+ECRR SGSVLGA
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTP-IANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

A0A1S3BAZ1 uncharacterized protein C6C3.02c-like4.8e-3378.89Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTP-IANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        G+AFGTGSAVAHRAVDAVMGPR IQHE +DSS+S  P +ANN GGS  C VQSK+F+DCLNHYG+DI KCQFYLDML+ECRR SGSVLGA
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTP-IANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

A0A6J1GHD7 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial-like6.1e-44100Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

A0A6J1HDK4 coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial8.2e-3379.12Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSS--SSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        G+AFGTGSAVAHRAVDAVMGPRVIQHE VDSS  SS   +A+NPGGS  C VQSK+F+DCLNHYG+DI KCQFYLDML+ECR+ SGSVLGA
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSS--SSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

A0A6J1KJW6 uncharacterized protein C6C3.02c-like4.4e-4297.75Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSS TPIANNPGGS TCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G09570.1 Cox19-like CHCH family protein7.6e-2356.18Show/hide
Query:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        GLA+GTG+A  HR VD+VMGPR  +HE V    S  P A N      C + SKAF+DC+NH+G+DI KCQFY+DML EC++ SGSV+ A
Subjt:  GLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

AT5G64400.1 CONTAINS InterPro DOMAIN/s: CHCH (InterPro:IPR010625)2.7e-2859.57Show/hide
Query:  SIMLSGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA
        S +  G+AFGTGSAVAHRAVD+VMGPR IQHE V+++S+    A +   S TC + +KAF+DC+  YG++I KCQFY+DML ECR+ SGSV+GA
Subjt:  SIMLSGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA

AT5G64400.2 BEST Arabidopsis thaliana protein match is: Cox19-like CHCH family protein (TAIR:AT5G09570.1)9.4e-1356.45Show/hide
Query:  SIMLSGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFED
        S +  G+AFGTGSAVAHRAVD+VMGPR IQHE V+++S+    A +   S TC + +KAF+D
Subjt:  SIMLSGLAFGTGSAVAHRAVDAVMGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGTCGGAGCTCTGGAGTTAAACATTACTTGTTATTACAGGACGATCTGCTTCCCGTCCTGCCCCGCGCGCTCCAGTTCGCAATCCTCCGCCGCCAGCTCATTCG
GCTCCTTCACCCGCACCTGTACAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACCATTGCTCAAGGTGAGTTTAGAAGCACTTGCACTTTTCCTTGGAA
GAAATCATTTTAATGCTATCATTACCATTGCTCAAGGTGAGTCTATAATGCTATCAGGTTTGGCCTTCGGTACTGGAAGTGCGGTCGCTCACAGGGCTGTCGATGCCGTA
ATGGGTCCTCGAGTCATCCAACATGAGAACGTTGATTCATCATCTTCTCCAACACCTATAGCAAACAATCCGGGAGGTTCTGGAACTTGTACCGTTCAATCAAAGGCCTT
TGAAGATTGTCTGAACCACTATGGAAACGACATTGGGAAGTGCCAATTCTACTTGGATATGTTGAAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAA
mRNA sequenceShow/hide mRNA sequence
CTGTTTGCCCGTTGTGTAAGGTTGATCCACGTGGCCGTCTCCAATAGGTCGATTACGCGATTCTGGAGGAATATATAAACGGCGGGAAACAGAAACCCCACCAAAACCAG
AAGCGCAGATCTCATCGACTTTTAGCGATAGCCGCCTCCGCTTCCGTTACTTTTCCTCATCACCGTCTTCTCGTGTTTTCGTCCGCAACCATGCCTCGTCGGAGCTCTGG
AGTTAAACATTACTTGTTATTACAGGACGATCTGCTTCCCGTCCTGCCCCGCGCGCTCCAGTTCGCAATCCTCCGCCGCCAGCTCATTCGGCTCCTTCACCCGCACCTGT
ACAAGGTGGTGGAGGTGGGTCTATGCTGGGAGGACTTGGTGCCACCATTGCTCAAGGTGAGTTTAGAAGCACTTGCACTTTTCCTTGGAAGAAATCATTTTAATGCTATC
ATTACCATTGCTCAAGGTGAGTCTATAATGCTATCAGGTTTGGCCTTCGGTACTGGAAGTGCGGTCGCTCACAGGGCTGTCGATGCCGTAATGGGTCCTCGAGTCATCCA
ACATGAGAACGTTGATTCATCATCTTCTCCAACACCTATAGCAAACAATCCGGGAGGTTCTGGAACTTGTACCGTTCAATCAAAGGCCTTTGAAGATTGTCTGAACCACT
ATGGAAACGACATTGGGAAGTGCCAATTCTACTTGGATATGTTGAAGGAATGTCGCAGGGGCTCAGGTTCTGTTTTGGGTGCTTAAAACAATTGATTTTTGGAACAACTA
TTATTATTTTCTCACTCTGTTCCATTCGGATGACCGCAGTGAGCGGTGTCATGATCATGTTTGTGTTGTGACAGTGTCTTCATTTTACGATCACTTCTATTAACTTCAAT
AAAAAGTGCTTTATGATGAAACACTTCACCATTTGGTCTCAATTGTTTGGTTTTGTGTTTTGA
Protein sequenceShow/hide protein sequence
MPRRSSGVKHYLLLQDDLLPVLPRALQFAILRRQLIRLLHPHLYKVVEVGLCWEDLVPPLLKVSLEALALFLGRNHFNAIITIAQGESIMLSGLAFGTGSAVAHRAVDAV
MGPRVIQHENVDSSSSPTPIANNPGGSGTCTVQSKAFEDCLNHYGNDIGKCQFYLDMLKECRRGSGSVLGA