; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G001900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G001900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionsn-glycerol-3-phosphate transport system permease protein UgpE
Genome locationCmo_Chr12:1253956..1257284
RNA-Seq ExpressionCmoCh12G001900
SyntenyCmoCh12G001900
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACR35810.1 unknown [Zea mays]9.5e-0433.33Show/hide
Query:  GGNSPEKLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGIS
        GG+SP +LL+    V   + LP   G  P+  L+K+ +      L    G  P+S   + S+++RF   P+S G SPV+LLLK  K       P   GI 
Subjt:  GGNSPEKLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGIS

Query:  PDKE--------------NSVAGIEPTKLLLD
        P  E              NS  GI P +LL D
Subjt:  PDKE--------------NSVAGIEPTKLLLD

GER39602.1 pentatricopeptide repeat (PPR) superfamily protein [Striga asiatica]1.7e-0538.68Show/hide
Query:  PFLQRCSGNEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGISPDKE------------NSVAGIEPTKLLLDKSKCSRLKRSDK
        PFL   SG+ P  L ++ SN SR E RPNS G  P   LL   K  S  ++    G SPDK+              +AGI P K   +KS   R  R + 
Subjt:  PFLQRCSGNEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGISPDKE------------NSVAGIEPTKLLLDKSKCSRLKRSDK

Query:  PSGISP
         SGISP
Subjt:  PSGISP

GER39606.1 sn-glycerol-3-phosphate transport system permease protein UgpE [Striga asiatica]1.3e-0833.69Show/hide
Query:  GNLPENEFPSNIMLDRLKVVQRPGGNSPE----------------KLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETS
        G+ PEN F     L     +Q P GNSPE                 LL E      +L+  SP G  P   L     P      QR  G+ P  L  + S
Subjt:  GNLPENEFPSNIMLDRLKVVQRPGGNSPE----------------KLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETS

Query:  NASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGISPDKE------------NSVAGIEPTKLLLDKSKCSRLKRSDKPSGISP
        N SR ECRP   G  P KLLL      S G+R    GI PD++              +AGI P +L  +KSK +   R +  SGISP
Subjt:  NASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGISPDKE------------NSVAGIEPTKLLLDKSKCSRLKRSDKPSGISP

KAF4387080.1 hypothetical protein G4B88_024652, partial [Cannabis sativa]1.6e-0636.5Show/hide
Query:  PIRLVSVSLERFQDKI---------SGNLPENEFPSNIMLDRLKVVQRPGGNSPEKLLLES-WIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSG
        P++L+S S  +F D++         SGN P N F       RL  + RPGGN P+KLL  +   ++  L  P  LG  P++LL +     K   L+   G
Subjt:  PIRLVSVSLERFQDKI---------SGNLPENEFPSNIMLDRLKVVQRPGGNSPEKLLLES-WIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSG

Query:  NEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKP
        N P S  + TS   R    P S G  P KL LK RKP
Subjt:  NEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKP

KAG6397412.1 hypothetical protein SASPL_143579 [Salvia splendens]1.9e-0430.77Show/hide
Query:  PENEFPSNIMLDRLKVVQRPGGNSPEKLLLESWIVRRVLQLPSPLGNSPLRLL--------------------EKA----TTPCKTPFLQRCSGNEPLSL
        PE+ F     + RL   +R GG  P K+LLE ++  R    P  +G  PLRLL                    E+A    TT  +        G  PL  
Subjt:  PENEFPSNIMLDRLKVVQRPGGNSPEKLLLESWIVRRVLQLPSPLGNSPLRLL--------------------EKA----TTPCKTPFLQRCSGNEPLSL

Query:  FIETSNASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGISPDKENSVA--------------GIEPTK-LLLDKSKCSRLKRSDKPSGISP
         +  SN+ R +  P   G  P+KLL    +  S  I P   GI PD   S +              GI P + LLL K  C+RLK S    GI P
Subjt:  FIETSNASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGISPDKENSVA--------------GIEPTK-LLLDKSKCSRLKRSDKPSGISP

TrEMBL top hitse value%identityAlignment
A0A0A0LPR0 Uncharacterized protein1.4e-4886.73Show/hide
Query:  MLDRLKVVQRPGGNSPEKLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKPFS
        MLDRLKVVQRPGG SPEKLLLESW VR+VLQLPSP GN PLRLLEKATTPCKT FLQRCSG EPLSLFIETSNASRFECRPNSCG+ PV+LLL  RKPFS
Subjt:  MLDRLKVVQRPGGNSPEKLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKPFS

Query:  IGIRPRFPGISPD
         G RPR PGISPD
Subjt:  IGIRPRFPGISPD

A0A5A7PHP6 Cytochrome c-type biogenesis protein CcmE3.8e-0632.26Show/hide
Query:  SLER-FQDKIS-GNLPENEFPSNIMLDRLKVVQRPGGNSPEKLLLESWIVRRVLQLPSPLGNSP---LRLLEKATTPCKTPFLQRCS-----GNEPLSLF
        S+ER F D IS GN PE+EFPS   ++R +    P G  P+  LL +    ++    +  G SP   L L+ K      T  L         G  P  LF
Subjt:  SLER-FQDKIS-GNLPENEFPSNIMLDRLKVVQRPGGNSPEKLLLESWIVRRVLQLPSPLGNSP---LRLLEKATTPCKTPFLQRCS-----GNEPLSLF

Query:  ----IETSNASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGISPDKENSVAGIEPTKLLLDKSKCSRLKRSDKPSGISPIKL
             +T   S  E  P S G+ P+K  +K      +G  PR  GISPD           KL + + K S      K SGI P+ L
Subjt:  ----IETSNASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGISPDKENSVAGIEPTKLLLDKSKCSRLKRSDKPSGISPIKL

A0A5A7Q3Y4 sn-glycerol-3-phosphate transport system permease protein UgpE6.2e-0933.69Show/hide
Query:  GNLPENEFPSNIMLDRLKVVQRPGGNSPE----------------KLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETS
        G+ PEN F     L     +Q P GNSPE                 LL E      +L+  SP G  P   L     P      QR  G+ P  L  + S
Subjt:  GNLPENEFPSNIMLDRLKVVQRPGGNSPE----------------KLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETS

Query:  NASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGISPDKE------------NSVAGIEPTKLLLDKSKCSRLKRSDKPSGISP
        N SR ECRP   G  P KLLL      S G+R    GI PD++              +AGI P +L  +KSK +   R +  SGISP
Subjt:  NASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRFPGISPDKE------------NSVAGIEPTKLLLDKSKCSRLKRSDKPSGISP

A0A7C9EQH4 Uncharacterized protein1.1e-1042.86Show/hide
Query:  VQRPGGNSPEKLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRF
        V +P G SP+K L  +  VR+    P  LG  P   L   TTP +    QR SG+ P++ F  TS +S  E RPNS GR P  LLL I   F++GI P F
Subjt:  VQRPGGNSPEKLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKPFSIGIRPRF

Query:  PGISP
         G +P
Subjt:  PGISP

A0A7J6GXM0 Uncharacterized protein (Fragment)7.6e-0736.5Show/hide
Query:  PIRLVSVSLERFQDKI---------SGNLPENEFPSNIMLDRLKVVQRPGGNSPEKLLLES-WIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSG
        P++L+S S  +F D++         SGN P N F       RL  + RPGGN P+KLL  +   ++  L  P  LG  P++LL +     K   L+   G
Subjt:  PIRLVSVSLERFQDKI---------SGNLPENEFPSNIMLDRLKVVQRPGGNSPEKLLLES-WIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSG

Query:  NEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKP
        N P S  + TS   R    P S G  P KL LK RKP
Subjt:  NEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIRKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCTTGCGTAATCGTCTCTTTCGCCGTGGTCAGGAATTTTCCGACCAGACGAGTGGAGGGACTGGAGTCGCAGAGCATCCGGCTGGACCTGGACATGGTCGATGA
GCATAGTAAGGATCTTATCGATGTCATAGAGAAGTGCCAAGGAGGGGAACGGCATCAAATTCGCCGGCGTTCTTTCTCCCATTGCAATCTTGTTGAGGGCGGCATTGGCG
TAGAATCTGCAGAACCTCCTTCATCGAAGGTCGTATTTCAGTACACTTTTCCGGATCCACCACTTCCAATCAGATTAGTTTCTGTCAGTCTCGAGAGATTCCAAGATAAG
ATATCTGGTAACTTGCCTGAGAATGAATTTCCATCTAACATTATGCTTGATAGATTGAAAGTAGTCCAAAGACCTGGAGGTAATTCGCCAGAAAAGTTATTATTAGAAAG
CTGGATTGTGCGTAGGGTCCTGCAATTGCCAAGCCCTCTTGGCAATTCGCCGCTAAGATTGTTGGAGAAAGCAACCACTCCCTGTAAGACGCCATTTTTACAGAGATGTT
CAGGTAATGAACCACTTAGTTTATTCATTGAAACCTCCAATGCTTCAAGATTTGAATGCAGACCCAATTCTTGTGGCAGGTCCCCGGTTAAGCTGTTGTTGAAGATCCGA
AAGCCTTTCAGCATCGGTATTAGGCCTAGATTCCCAGGAATCTCACCAGACAAAGAGAACAGTGTAGCAGGAATAGAGCCAACCAAATTGTTGCTGGATAAATCCAAGTG
CTCAAGGCTCAAAAGATCCGATAAGCCTTCTGGGATTTCACCAATCAAGTTGGATTTTCTTATCCACATATATTTCAACTTCTTCAGTTTCCTAAACTCTTGTGGTATTG
GCGATGGGACGAGCAAAGTGTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCTTGCGTAATCGTCTCTTTCGCCGTGGTCAGGAATTTTCCGACCAGACGAGTGGAGGGACTGGAGTCGCAGAGCATCCGGCTGGACCTGGACATGGTCGATGA
GCATAGTAAGGATCTTATCGATGTCATAGAGAAGTGCCAAGGAGGGGAACGGCATCAAATTCGCCGGCGTTCTTTCTCCCATTGCAATCTTGTTGAGGGCGGCATTGGCG
TAGAATCTGCAGAACCTCCTTCATCGAAGGTCGTATTTCAGTACACTTTTCCGGATCCACCACTTCCAATCAGATTAGTTTCTGTCAGTCTCGAGAGATTCCAAGATAAG
ATATCTGGTAACTTGCCTGAGAATGAATTTCCATCTAACATTATGCTTGATAGATTGAAAGTAGTCCAAAGACCTGGAGGTAATTCGCCAGAAAAGTTATTATTAGAAAG
CTGGATTGTGCGTAGGGTCCTGCAATTGCCAAGCCCTCTTGGCAATTCGCCGCTAAGATTGTTGGAGAAAGCAACCACTCCCTGTAAGACGCCATTTTTACAGAGATGTT
CAGGTAATGAACCACTTAGTTTATTCATTGAAACCTCCAATGCTTCAAGATTTGAATGCAGACCCAATTCTTGTGGCAGGTCCCCGGTTAAGCTGTTGTTGAAGATCCGA
AAGCCTTTCAGCATCGGTATTAGGCCTAGATTCCCAGGAATCTCACCAGACAAAGAGAACAGTGTAGCAGGAATAGAGCCAACCAAATTGTTGCTGGATAAATCCAAGTG
CTCAAGGCTCAAAAGATCCGATAAGCCTTCTGGGATTTCACCAATCAAGTTGGATTTTCTTATCCACATATATTTCAACTTCTTCAGTTTCCTAAACTCTTGTGGTATTG
GCGATGGGACGAGCAAAGTGTTATAA
Protein sequenceShow/hide protein sequence
MSACVIVSFAVVRNFPTRRVEGLESQSIRLDLDMVDEHSKDLIDVIEKCQGGERHQIRRRSFSHCNLVEGGIGVESAEPPSSKVVFQYTFPDPPLPIRLVSVSLERFQDK
ISGNLPENEFPSNIMLDRLKVVQRPGGNSPEKLLLESWIVRRVLQLPSPLGNSPLRLLEKATTPCKTPFLQRCSGNEPLSLFIETSNASRFECRPNSCGRSPVKLLLKIR
KPFSIGIRPRFPGISPDKENSVAGIEPTKLLLDKSKCSRLKRSDKPSGISPIKLDFLIHIYFNFFSFLNSCGIGDGTSKVL