CuGenDBv2

Gene ID	CmoCh12G002070
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Translation initiation factor IF-2
Genome location	Cmo_Chr12:1366692..1370099
RNA-Seq Expression	CmoCh12G002070
Synteny	CmoCh12G002070
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6585389.1 hypothetical protein SDJN03_18122, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-95

98.99

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Query:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
        MVSD KPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSV PKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
Subjt:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

KAG7020306.1 hypothetical protein SDJN02_16990, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.6e-95

98.99

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Query:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
        MVSD KPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSV PKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
Subjt:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

XP_022951620.1 uncharacterized protein LOC111454380 isoform X1 [Cucurbita moschata]

1.1e-96

100

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Query:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
        MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
Subjt:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

XP_023002565.1 uncharacterized protein LOC111496374 [Cucurbita maxima]

2.5e-93

97.49

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Query:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
        MVSD KPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKAT+STAKVREKKVFNLAGQKYDPPEEREPLRIF
Subjt:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTS MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQP KNGDLKAKKKITN+SDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

XP_023536695.1 uncharacterized protein LOC111797995 isoform X1 [Cucurbita pepo subsp. pepo]

1.7e-94

97.99

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Query:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
        MVSD KPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSV PKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQK+DPPEEREPLRIF
Subjt:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKK+RRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LLY4 Uncharacterized protein

4.4e-72

80.86

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Query:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTK---ATTSTAKVREKKVFNLAGQKYDPPE
        MVSDPK T+SK+K    DGGSRLKLESSD+KK       +S+ SSKHKSVS++ K+EVKSKTI+SSSKTTTK    TT+TAKVREKKVFNL GQKYDPPE
Subjt:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTK---ATTSTAKVREKKVFNLAGQKYDPPE

Query:  EREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIK--SLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDF
        EREPLRIFYESLSKQI  SEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIK  S KP SRPESSQRPQ PSKNGD+KAKKKI N+SDDDD DF
Subjt:  EREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIK--SLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDF

Query:  ILSPKRRKM
        ILSPKRRKM
Subjt:  ILSPKRRKM

A0A1S3BCG5 uncharacterized protein LOC103488185 isoform X1

3.4e-72

80.86

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Query:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTK---ATTSTAKVREKKVFNLAGQKYDPPE
        MVSDPK T+SK+K    DGGSRLKLESSD+KK       +S+ SSKHKSVS++ KSEVKSKTI+SSSKTTTK    TT+TAKVREKK+FNL GQKYDPPE
Subjt:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKN-----NSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTK---ATTSTAKVREKKVFNLAGQKYDPPE

Query:  EREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIK--SLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDF
        EREPLRIFYESLSKQI  SEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIK  S KP SRPESSQRPQ PSKNGD+KAKKKI N+SDDDD DF
Subjt:  EREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIK--SLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDF

Query:  ILSPKRRKM
        ILSPKRRKM
Subjt:  ILSPKRRKM

A0A6J1GJC9 uncharacterized protein LOC111454380 isoform X1

5.2e-97

100

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Query:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
        MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
Subjt:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

A0A6J1K794 uncharacterized protein LOC111491788

4.2e-70

79.7

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Query:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATT--STAKVREKKVFNLAGQKYDPPEEREPLR
        MVS+PKPTVSK K G+QDGGSRLK++SS    N     SSKHKSVSV+ KSEVKSKT +SSS+ TTK TT  +TAKVREKKV+NL GQK DPPEEREPLR
Subjt:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATT--STAKVREKKVFNLAGQKYDPPEEREPLR

Query:  IFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKI-TNNSDDDDNDFILSPKRR
        IFYESLSKQI  SEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQR+GTPIKS K  S+PESSQRPQQPSKNGDLKAK+K+ TN+SDDDD++FILSPKRR
Subjt:  IFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKI-TNNSDDDDNDFILSPKRR

Query:  KM
        KM
Subjt:  KM

A0A6J1KPA8 uncharacterized protein LOC111496374

1.2e-93

97.49

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Query:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF
        MVSD KPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKAT+STAKVREKKVFNLAGQKYDPPEEREPLRIF
Subjt:  MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIF

Query:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM
        YESLSKQISTS MAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQP KNGDLKAKKKITN+SDDDDNDFILSPKRRKM
Subjt:  YESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G19990.1 unknown protein

1.4e-17

39.51

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Query:  GHQDGGSRLKLESS-----DNKKNNSSVSSSKHKSV----------SVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRI
        G+  G  +LK E +     DNK   SSVS S+ K V             P S+  S    S      +      K RE+KV++L GQK + P+ER+PLRI
Subjt:  GHQDGGSRLKLESS-----DNKKNNSSVSSSKHKSV----------SVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRI

Query:  FYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPES--------------SQRPQQPSKNGDLK-AKKKITNNSD
        FYESL KQI TS+MA+ W+ME G+L  EKAKK  EKKL  QK  +  +P+KS     R  S              S+      K  D K   KK   NSD
Subjt:  FYESLSKQISTSEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPES--------------SQRPQQPSKNGDLK-AKKKITNNSD

Query:  DDDND
        DDD+D
Subjt:  DDDND

AT5G11600.1 unknown protein

1.7e-36

56.21

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Query:  SVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAK---VREKKVFNLAGQKYDPPEEREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKA
        +++++   +  V  K++  S  ++     TT AT S  K    REKKV++LAGQK+DPPEEREPLRIFYESLSKQI  SEMAEFW+MEHGMLSPEKAK+A
Subjt:  SVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAK---VREKKVFNLAGQKYDPPEEREPLRIFYESLSKQISTSEMAEFWMMEHGMLSPEKAKKA

Query:  YEKKLRRQKEQRTGTPIKSLKP-PSRPESSQRPQQPSKNG-DLKAKKKITNNSDDDDNDFILSPKRRKM
        +EKK R+ K+ R GTP KS     S+ ESSQR      NG D + KKK+ ++ DDDD+DFILS KRRK+
Subjt:  YEKKLRRQKEQRTGTPIKSLKP-PSRPESSQRPQQPSKNG-DLKAKKKITNNSDDDDNDFILSPKRRKM

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTTTCAGACCCCAAACCCACTGTTTCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACAACAAGAAGAACAACAGCTCAGT
TTCCTCTTCCAAACACAAATCCGTCTCTGTTCTTCCCAAATCCGAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCACAACAAAAGCTACTACTTCTACTGCTA
AAGTGAGAGAAAAGAAAGTGTTCAATTTGGCTGGTCAGAAATACGATCCACCTGAAGAGAGAGAGCCGCTTCGGATATTTTATGAATCCTTGTCGAAACAGATATCAACA
AGTGAAATGGCAGAATTTTGGATGATGGAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGAAGAAACTGAGAAGACAAAAGGAACAAAGGACCGGGAC
TCCGATTAAATCATTAAAACCACCGAGCAGACCAGAGAGCTCACAGAGGCCACAGCAGCCATCGAAGAATGGCGATCTAAAAGCAAAGAAAAAGATCACGAACAATAGCG
ATGACGACGACAATGACTTCATTTTAAGCCCCAAGAGAAGAAAAATGTAG

mRNA sequence

Show/hide mRNA sequence

GGCGGAATTTTGATACTTCTTGTTCACATTTATTTTTATTATCTTATTCTGAAGCAGCTCGAATGGATATATCTTCAGCAGGAAGAAGAAGAAAAGGACAGTAAGAAGAA
GAACGAAGAAGACGAGAGGAAGAACAACATTGATTCTTTTGACAAAAATAGTCAAAATTATTAAGCAAAAACAGAAGCCCATTATGGTTTCAGACCCCAAACCCACTGTT
TCGAAGGTCAAACTAGGTCATCAAGATGGCGGCTCCAGGTTAAAGCTCGAATCCTCCGACAACAAGAAGAACAACAGCTCAGTTTCCTCTTCCAAACACAAATCCGTCTC
TGTTCTTCCCAAATCCGAGGTGAAATCTAAAACAATAACGAGTTCTTCAAAGACCACAACAAAAGCTACTACTTCTACTGCTAAAGTGAGAGAAAAGAAAGTGTTCAATT
TGGCTGGTCAGAAATACGATCCACCTGAAGAGAGAGAGCCGCTTCGGATATTTTATGAATCCTTGTCGAAACAGATATCAACAAGTGAAATGGCAGAATTTTGGATGATG
GAGCATGGCATGTTATCTCCCGAAAAGGCGAAAAAGGCGTACGAGAAGAAACTGAGAAGACAAAAGGAACAAAGGACCGGGACTCCGATTAAATCATTAAAACCACCGAG
CAGACCAGAGAGCTCACAGAGGCCACAGCAGCCATCGAAGAATGGCGATCTAAAAGCAAAGAAAAAGATCACGAACAATAGCGATGACGACGACAATGACTTCATTTTAA
GCCCCAAGAGAAGAAAAATGTAGGAAAAACGCCTGCCAACGCCCACCTCCCCCTCGTTTTTAGTAGCATACTTTTCGAAAACTACAGAGATTATCATAACCCAGTATTTA
TCAGGACGTTCTTTTATGGTTCAAAACCTTCTCATACAACGTGTAATTACTCGGGTCGAGTACGACACCCAATCAATAACTATGGACCCATCTGAGAAACTCGAGCCTAA
ATTTCCTCTCGGCCTTGGAAGTAAACAAAACAG

Protein sequence

Show/hide protein sequence

MVSDPKPTVSKVKLGHQDGGSRLKLESSDNKKNNSSVSSSKHKSVSVLPKSEVKSKTITSSSKTTTKATTSTAKVREKKVFNLAGQKYDPPEEREPLRIFYESLSKQIST
SEMAEFWMMEHGMLSPEKAKKAYEKKLRRQKEQRTGTPIKSLKPPSRPESSQRPQQPSKNGDLKAKKKITNNSDDDDNDFILSPKRRKM

CmoCh12G002070 (gene) of Cucurbita moschata (Rifu) v1 genome