; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G002080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G002080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionexosome complex exonuclease RRP46 homolog
Genome locationCmo_Chr12:1370979..1375449
RNA-Seq ExpressionCmoCh12G002080
SyntenyCmoCh12G002080
Gene Ontology termsGO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0006259 - DNA metabolic process (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0004540 - ribonuclease activity (molecular function)
GO:0004536 - deoxyribonuclease activity (molecular function)
GO:0004527 - exonuclease activity (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0003727 - single-stranded RNA binding (molecular function)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150286.1 exosome complex exonuclease RRP46 homolog [Cucumis sativus]2.8e-12391.87Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTSI+VQVIHDDGA   LLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+GIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        S+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP +SSK G
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

XP_022131722.1 exosome complex exonuclease RRP46 homolog isoform X1 [Momordica charantia]2.1e-12393.85Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTSI+VQVIHDDGA   LLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQV  EPLE+GIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSK
        S+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSK

XP_022951618.1 exosome complex exonuclease RRP46 homolog [Cucurbita moschata]1.8e-13098.78Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTSIVVQVIHDDGA   LLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

XP_023002484.1 exosome complex exonuclease RRP46 homolog [Cucurbita maxima]5.2e-13098.37Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTSIVVQVIHDDGA   LLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQV GEPLENGIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

XP_023538111.1 exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]2.0e-12997.97Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRA+GSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTSIVVQVIHDDGA   LLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

TrEMBL top hitse value%identityAlignment
A0A0A0LLJ9 Uncharacterized protein1.3e-12391.87Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTSI+VQVIHDDGA   LLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+GIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        S+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP +SSK G
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

A0A5A7VGL5 Exosome complex exonuclease RRP46-like protein6.7e-12391.46Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTSI+VQVIHDDGA   LLPCAINASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+PEGSTQ  GEPLE+G+IT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        S+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQL  DSSK G
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

A0A6J1BU99 exosome complex exonuclease RRP46 homolog isoform X11.0e-12393.85Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME+DRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTSI+VQVIHDDGA   LLPCAINASCAALVDAGIPLKHLAVAI CCLSESGYVILDPTKLEEQKMKA VHLVFPNSPVSVIP+GSTQV  EPLE+GIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSK
        S+TQGAMSVDDYIHCLERGRAATAKMS FLRRSLQPQLP DSSK
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSK

A0A6J1GI69 exosome complex exonuclease RRP46 homolog8.7e-13198.78Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTSIVVQVIHDDGA   LLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

A0A6J1KQK5 exosome complex exonuclease RRP46 homolog2.5e-13098.37Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTSIVVQVIHDDGA   LLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQV GEPLENGIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

SwissProt top hitse value%identityAlignment
Q4JB27 Exosome complex component Rrp415.8e-1527.08Show/hide
Query:  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKN-ENPEKASIEVIW--------KPKTGQIGKLERECEMILKRTLQSICILT
        R DGR  ++LRP+     VL  A GSA +  G+TK++AAVYGPK    ++   P+KAS+ V +        + K     + E E   +++  L+S  +L 
Subjt:  RDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKN-ENPEKASIEVIW--------KPKTGQIGKLERECEMILKRTLQSICILT

Query:  INPNTTTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLE
        + P T   I ++V+  D    L+   A+ A+  AL DAGIP++ L   ++   ++ G ++LD  + E+   +A +       P++V+P       G+   
Subjt:  INPNTTTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLE

Query:  NGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ
          ++     G M+ D++    E  +   + + A  + +L+
Subjt:  NGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQ

Q84T68 Exosome complex exonuclease RRP46 homolog1.3e-7863.07Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        ME  R DGR  NQLRP +C+ N L+RAHGSA W+QGDT +LAAVYGPK GT+K ENPEKASIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT++PNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTS+++QV+ +DG+   LLPCAINA CAALV AGIPLKHLAVAI C + E G VILD  K EEQ++K+  HLVFPNS  S   +   Q   E  E G+IT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTD
        S+T G MS +DY  C+ERG AA++++S F+R +LQ Q P D
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTD

Q9CRA8 Exosome complex component RRP469.8e-3135.14Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ +  ++P T+ ++V+QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDG

Query:  AVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYI
        +   LL C +NA+C ALVDAG+P++ L   ++C L   G ++LDPT  +E++ +A +     ++                 E  ++ S T+G  S  +  
Subjt:  AVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYI

Query:  HCLERGRAATAKMSAFLRRSLQ
         CL   +AA+  +  F R SLQ
Subjt:  HCLERGRAATAKMSAFLRRSLQ

Q9LX74 Exosome complex exonuclease RRP46 homolog4.5e-10072.36Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTS+++QV+HDDG+   LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        S+T G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

Q9NQT4 Exosome complex component RRP461.2e-3136.04Show/hide
Query:  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDG
        LR  AC  N+L+R  GSAS+ QGDT +LA VYGP       E   KA++EVI +PK G  G  E+  E +++ T +++ + T++P T+ ++V+QV+ D G
Subjt:  LRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDG

Query:  AVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYI
        +   LL C +NA+C ALVDAG+P++ L   ++C L   G ++LDPT  +E++ +A +                   A + +E  ++ S T+G  S  +  
Subjt:  AVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYI

Query:  HCLERGRAATAKMSAFLRRSLQ
         CL   +AA+  +  F R SLQ
Subjt:  HCLERGRAATAKMSAFLRRSLQ

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein3.2e-10172.36Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTS+++QV+HDDG+   LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        S+T G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein3.2e-10172.36Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTS+++QV+HDDG+   LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        S+T G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

AT3G46210.3 Ribosomal protein S5 domain 2-like superfamily protein3.2e-10172.36Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTS+++QV+HDDG+   LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        S+T G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

AT3G46210.4 Ribosomal protein S5 domain 2-like superfamily protein3.2e-10172.36Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTS+++QV+HDDG+   LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        S+T G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG

AT3G46210.5 Ribosomal protein S5 domain 2-like superfamily protein3.2e-10172.36Show/hide
Query:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT
        MEIDR+DGRT NQLRPLACS N+L+R HGSASWSQGDTK+LAAVYGPKAGTKKNEN EKA  EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT+NPNT
Subjt:  MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNT

Query:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT
        TTS+++QV+HDDG+   LLPCAINA+CAALVDAGIP+KHLAVAI CCL+E+GY++LDP KLEE+KM A  +LVFPN+ +SV+PEGS+   GEP+E+GIIT
Subjt:  TTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIIT

Query:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG
        S+T G MSVDDY  C+E GRAATA +SAF R++ Q      SSK G
Subjt:  SLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGGCTTTTTAACCCAAATGTTGACTATTGTGGGCCTATTGGGCTGACAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTT
CGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGTTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATG
ATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCA
GTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTG
TGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTGTATCCC
TTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCCTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATAT
GTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGC
AGGCGAACCTCTGGAGAATGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGT
CAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGGCTTTTTAACCCAAATGTTGACTATTGTGGGCCTATTGGGCTGACAGTCCTTCTCCCAGTATTCATAGGCCCGGCGGCGCCACCTCTCTGCCTCCTCTACTT
CGCCATCTCTCTCTCTGATACTCGCTCACTCCATTCTCTTGACCAGTTATTCTTTTCCTTTCTAATCGTTTTAAATCACCGGAGAAAGACCATGGAGATAGACAGAGATG
ATGGCCGTACCGCCAACCAGTTGAGACCACTTGCTTGTTCTTGCAATGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCTCAAGGCGACACGAAAATTCTCGCTGCA
GTCTATGGACCTAAAGCAGGAACAAAGAAGAATGAAAATCCTGAAAAGGCTTCAATTGAGGTTATATGGAAACCGAAAACAGGGCAAATTGGAAAACTGGAAAGGGAGTG
TGAGATGATATTGAAGAGGACATTGCAGAGTATTTGCATATTAACTATAAATCCCAATACCACGACATCTATTGTAGTTCAGGTTATTCATGATGATGGAGCTGTATCCC
TTCTTCTTCCTTGTGCAATTAATGCATCATGTGCTGCCTTAGTAGATGCTGGAATTCCCTTAAAGCATCTTGCTGTTGCAATTTCTTGTTGTTTGTCTGAGAGTGGATAT
GTTATTTTGGATCCAACCAAGCTAGAGGAGCAGAAAATGAAGGCATCAGTACATTTGGTCTTTCCGAACTCACCTGTCTCAGTAATTCCTGAAGGATCTACCCAAGTTGC
AGGCGAACCTCTGGAGAATGGAATAATAACATCTTTAACTCAGGGTGCAATGTCAGTGGATGATTATATTCACTGTCTGGAACGAGGGCGTGCTGCAACAGCAAAAATGT
CAGCTTTTTTGAGGAGAAGCTTGCAGCCTCAACTCCCAACGGATTCCTCAAAAGTCGGGTGATTGGATCCAAGTCCTTGCCTATGAATTGTGCTCCACGACATAATCTGG
CTTGGGAAGGTATCGTCTGTTGTATGATTTATTTTTATGTAATCTCAAATCCATACTAATTGGGTCTTTCAGAGCTGTAAACCGGGCATTAATTTAAATGATGATAAAGA
GTTCTCAGTGGATTTGATTGATGCATTGTACGTTTACTCTTTTTTTGTTGTGCATTTGTTTGATATTCTAG
Protein sequenceShow/hide protein sequence
MFGLFNPNVDYCGPIGLTVLLPVFIGPAAPPLCLLYFAISLSDTRSLHSLDQLFFSFLIVLNHRRKTMEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAA
VYGPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGAVSLLLPCAINASCAALVDAGIPLKHLAVAISCCLSESGY
VILDPTKLEEQKMKASVHLVFPNSPVSVIPEGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSSKVG