CuGenDBv2

Gene ID	CmoCh12G002370
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	selenoprotein H-like
Genome location	Cmo_Chr12:1561317..1564157
RNA-Seq Expression	CmoCh12G002370
Synteny	CmoCh12G002370
Gene Ontology terms	GO:0005794 - Golgi apparatus (cellular component)
InterPro domains	IPR011893 - Selenoprotein, Rdx-type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6585418.1 Fasciclin-like arabinogalactan protein 5, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-80

97.58

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Query:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
        MAPKKRSKIQEDETA AKPVPASSRVTRRSPRLA NSKADL VEE VVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
Subjt:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC

Query:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEE
        QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEE
Subjt:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEE

KAG7020338.1 hypothetical protein SDJN02_17022 [Cucurbita argyrosperma subsp. argyrosperma]

6.6e-82

84.31

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Query:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
        MAPKKRSKIQEDETA AKPVPASSRVTRRSPRLA NSKADL VEE VVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
Subjt:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC

Query:  QSFKKRAMEVQNGLEKGVPGITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIE
        QSFKKRAMEVQNGLEKGVPGITVLLNPD                            KPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIE
Subjt:  QSFKKRAMEVQNGLEKGVPGITVLLNPD----------------------------KPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIE

Query:  KIKG
        KIKG
Subjt:  KIKG

XP_022950994.1 selenoprotein H-like isoform X1 [Cucurbita moschata]

5.6e-89

100

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Query:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
        MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
Subjt:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC

Query:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG
        QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG
Subjt:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG

XP_023002520.1 selenoprotein H-like isoform X1 [Cucurbita maxima]

2.7e-83

94.89

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Query:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
        MAPKKRSKIQEDETA AKPVP SSRVTRRSPRLA NSKADLTVEE VVKLPK+KKAKR PKEN KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
Subjt:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC

Query:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG
        QSFKKRAMEVQNGLEKGVPGITVLLNPDK RRGCFEIRSEDGEKFISLLDMKRPFT+MKELDMEEVISDIIEKIKG
Subjt:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG

XP_023536837.1 selenoprotein H-like [Cucurbita pepo subsp. pepo]

1.7e-85

96.59

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Query:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
        MAPKKRSKIQEDETA AKPVPASSR TRRSPRLA NSKADLTVEE VVKLPKRKKAKR PKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
Subjt:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC

Query:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG
        QSFKKRA+EVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG
Subjt:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1GHC6 selenoprotein H-like isoform X2

9.3e-74

100

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Query:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
        MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
Subjt:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC

Query:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLL
        QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLL
Subjt:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLL

A0A6J1GHF7 selenoprotein H-like isoform X1

2.7e-89

100

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Query:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
        MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
Subjt:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC

Query:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG
        QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG
Subjt:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG

A0A6J1K9R2 selenoprotein H-like

3.8e-67

78.21

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Query:  MAPKKRSKIQEDETAVA---KPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHC
        MAP+KRSK QED+ A A   KP P SS VTRRSPRLA NS ADL VEE V +LPK KK KR PKENGKA+EV NEGE++DAAS+KL  +AKNR VVIE C
Subjt:  MAPKKRSKIQEDETAVA---KPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHC

Query:  KQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG
        KQCQSFKKRA++VQ+GLE GV GITVLLNP+KPR+GCFEIRS+DGEKFISLLDMKRPFTRMKEL+MEEVISDIIEKIKG
Subjt:  KQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG

A0A6J1KLJ2 uncharacterized protein LOC111496337 isoform X2

1.5e-68

94.63

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Query:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
        MAPKKRSKIQEDETA AKPVP SSRVTRRSPRLA NSKADLTVEE VVKLPK+KKAKR PKEN KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
Subjt:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC

Query:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLL
        QSFKKRAMEVQNGLEKGVPGITVLLNPDK RRGCFEIRSEDGEKFISLL
Subjt:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLL

A0A6J1KP64 selenoprotein H-like isoform X1

1.3e-83

94.89

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Query:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
        MAPKKRSKIQEDETA AKPVP SSRVTRRSPRLA NSKADLTVEE VVKLPK+KKAKR PKEN KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC
Subjt:  MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQC

Query:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG
        QSFKKRAMEVQNGLEKGVPGITVLLNPDK RRGCFEIRSEDGEKFISLLDMKRPFT+MKELDMEEVISDIIEKIKG
Subjt:  QSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG

SwissProt top hits

e value

%identity

Alignment

Q3UQA7 Selenoprotein H

2.3e-05

31.03

Show/hide

Query:  AKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEI---RSEDGEKFISLLDMKRPFTRMKELDMEEVISDI
        A+   VVIEHC   + + + A  +   L+   P + V +NP KPRRG FE+   RS++    +     K P  ++K  + +EV+ ++
Subjt:  AKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEI---RSEDGEKFISLLDMKRPFTRMKELDMEEVISDI

Q8IZQ5 Selenoprotein H

1.5e-04

29.36

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Query:  KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIR--SEDGEKFISLLDMKR-PFTRMKEL
        K E++ N GE ++ A+           VVIEHC   + + + A  +   L    P + V +NP KPRRG FE+     DG        +K+ P  ++K  
Subjt:  KAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIR--SEDGEKFISLLDMKR-PFTRMKEL

Query:  DMEEVISDI
        + +EV+ ++
Subjt:  DMEEVISDI

Arabidopsis top hits

e value

%identity

Alignment

AT2G24440.1 selenium binding

1.5e-36

55.06

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Query:  RVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKR--GPKENGKAEEV-----ENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKG
        R TR   +  G+S   + +E    K  K  KAK     K+  K EEV     + E ED DAA ++   ++  + +VIEHCKQC+SFK+RA EV+ GLE+ 
Subjt:  RVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKR--GPKENGKAEEV-----ENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEVQNGLEKG

Query:  VPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIK
        VPGI V +NPDKPRRGCFEIR E GE FISLL MKRPFT MKEL+MEEVI+DI+EKIK
Subjt:  VPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIK

AT4G31360.1 selenium binding

6.5e-35

49.21

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Query:  PKKRSKIQEDETAVAKPVPASSRVTR------RSPRLAGNSKADLTVEETVVKLPKRK-------KAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKN
        P K+SK   +E A      ASSRVTR      RS      +KA  +  +   K  KRK       +AK+G KE    EEVE   E ++   EK   E ++
Subjt:  PKKRSKIQEDETAVAKPVPASSRVTR------RSPRLAGNSKADLTVEETVVKLPKRK-------KAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKN

Query:  ---RAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIK
             +VIEHCKQC +FK RA++V+  LE  VPG+TV LNP+KPRRGCFEIR E G+ FISLL+MKRPF  MK LDMEEVI DII+K+K
Subjt:  ---RAVVIEHCKQCQSFKKRAMEVQNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGACGAGACGGCGGTGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGGCTGGCGGGGAACTC
GAAGGCCGATTTGACGGTGGAGGAGACTGTGGTGAAGTTGCCAAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAG
AGGATCTTGACGCTGCCTCAGAGAAGCTTGGCGTGGAAGCTAAGAACAGAGCGGTTGTGATTGAACATTGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTG
CAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACTGTTCTGCTCAACCCTGATAAGCCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAG
TCTTCTGGACATGAAGCGACCGTTTACACGAATGAAGGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAA

mRNA sequence

Show/hide mRNA sequence

GAAACCAAACTGGAACTGCGTGGACGTCGTACGACCACCCAGTCAACGGCCACGATCCATTCTCATCCTCCAAATTCATTTCCACCGTCGCTTCAAAATCCCACCGCCGA
TAACAAAAGCGCGGGAAAACCAAACCTAATCCATCCCATAAACTGTGCATCACTGCCAACCAACGGTCGCATACACAACTCTCAGTGGAAGTGGAACAGATAGATTGAAC
TTTGAAGCCGATAAATCTCGTTTCCTCCATTACACTGAGTATCTCTGTGTTTTTAGGGTTTCAGGTCTTCTTCCATGGCGCCGAAAAAGCGAAGCAAGATCCAGGAAGAC
GAGACGGCGGTGGCGAAGCCGGTCCCGGCGTCGTCGAGGGTGACGAGAAGGTCGCCCCGGCTGGCGGGGAACTCGAAGGCCGATTTGACGGTGGAGGAGACTGTGGTGAA
GTTGCCAAAGAGGAAGAAGGCGAAACGTGGTCCGAAGGAGAATGGGAAGGCGGAGGAGGTTGAAAATGAGGGAGAGGATCTTGACGCTGCCTCAGAGAAGCTTGGCGTGG
AAGCTAAGAACAGAGCGGTTGTGATTGAACATTGTAAGCAGTGCCAATCGTTCAAGAAAAGGGCGATGGAGGTGCAGAATGGTCTAGAGAAGGGTGTTCCTGGAATCACT
GTTCTGCTCAACCCTGATAAGCCAAGAAGAGGGTGCTTTGAAATTCGGAGTGAAGATGGCGAGAAGTTTATCAGTCTTCTGGACATGAAGCGACCGTTTACACGAATGAA
GGAACTGGACATGGAGGAGGTAATTTCAGATATCATTGAGAAGATAAAAGGATAA

Protein sequence

Show/hide protein sequence

MAPKKRSKIQEDETAVAKPVPASSRVTRRSPRLAGNSKADLTVEETVVKLPKRKKAKRGPKENGKAEEVENEGEDLDAASEKLGVEAKNRAVVIEHCKQCQSFKKRAMEV
QNGLEKGVPGITVLLNPDKPRRGCFEIRSEDGEKFISLLDMKRPFTRMKELDMEEVISDIIEKIKG

CmoCh12G002370 (gene) of Cucurbita moschata (Rifu) v1 genome