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CmoCh12G002770 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G002770
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRan BP2/NZF zinc finger-like superfamily protein
Genome locationCmo_Chr12:1783771..1784145
RNA-Seq ExpressionCmoCh12G002770
SyntenyCmoCh12G002770
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585459.1 Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp. sororia]7.7e-6999.19Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
        MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR

Query:  IRGFNFGGASNCPGWKSGDWICAR
        IRGFNFGGASN PGWKSGDWICAR
Subjt:  IRGFNFGGASNCPGWKSGDWICAR

KAG7020377.1 SPAC17H9.04c [Cucurbita argyrosperma subsp. argyrosperma]1.7e-6898.39Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
        MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSS+FGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR

Query:  IRGFNFGGASNCPGWKSGDWICAR
        IRGFNFGGASN PGWKSGDWICAR
Subjt:  IRGFNFGGASNCPGWKSGDWICAR

XP_022951649.1 TATA-binding protein-associated factor 2N-like [Cucurbita moschata]3.1e-70100Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
        MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR

Query:  IRGFNFGGASNCPGWKSGDWICAR
        IRGFNFGGASNCPGWKSGDWICAR
Subjt:  IRGFNFGGASNCPGWKSGDWICAR

XP_023002539.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]2.2e-6898.39Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
        MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGG GYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR

Query:  IRGFNFGGASNCPGWKSGDWICAR
        IRGFNFGGASN PGWKSGDWICAR
Subjt:  IRGFNFGGASNCPGWKSGDWICAR

XP_023538151.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]3.8e-6898.39Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
        MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGA YGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR

Query:  IRGFNFGGASNCPGWKSGDWICAR
        IRGFNFGGASN PGWKSGDWICAR
Subjt:  IRGFNFGGASNCPGWKSGDWICAR

TrEMBL top hitse value%identityAlignment
A0A0A0LLW7 Uncharacterized protein1.8e-6392Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGR-GGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLS
        MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG  YGGGR GGSSSFGFTTGPDVRPGDWYC VANCGAHNFASRSICFKCGA+KDE SAAAYDGDL 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGR-GGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLS

Query:  RIRGFNFGGASNCPGWKSGDWICAR
        R+RGFNFGGASN PGWKSGDWICAR
Subjt:  RIRGFNFGGASNCPGWKSGDWICAR

A0A1S3BBL4 uncharacterized RNA-binding protein C17H9.04c1.8e-6392Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGR-GGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLS
        MSRPGDWNCRSCNHLNFQRRDSC RCGDPRADFGG  YGGGR GGSSSFGFTTGPDVRPGDWYC VANCGAHNFASRSICFKCGA+KDE SAAAYDGDL 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGR-GGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLS

Query:  RIRGFNFGGASNCPGWKSGDWICAR
        R+RGFNFGGASN PGWKSGDWICAR
Subjt:  RIRGFNFGGASNCPGWKSGDWICAR

A0A6J1BUS6 uncharacterized RNA-binding protein C17H9.04c-like5.8e-6288.8Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGG-GRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLS
        MSRPGDWNCRSCNHLNFQRRDSCHRCG+PRADFGG GYGG  R GSSSFGFTTGPDVRPGDWYCA+ NCGAHNFASRSICFKCGA KD+ASA AYDGD+ 
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGG-GRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLS

Query:  RIRGFNFGGASNCPGWKSGDWICAR
        R+RGFNFGGASN PGWKSGDWICAR
Subjt:  RIRGFNFGGASNCPGWKSGDWICAR

A0A6J1GJE4 TATA-binding protein-associated factor 2N-like1.5e-70100Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
        MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR

Query:  IRGFNFGGASNCPGWKSGDWICAR
        IRGFNFGGASNCPGWKSGDWICAR
Subjt:  IRGFNFGGASNCPGWKSGDWICAR

A0A6J1KQR0 uncharacterized RNA-binding protein C17H9.04c-like1.1e-6898.39Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
        MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGG GYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSR

Query:  IRGFNFGGASNCPGWKSGDWICAR
        IRGFNFGGASN PGWKSGDWICAR
Subjt:  IRGFNFGGASNCPGWKSGDWICAR

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c2.5e-0934.53Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCHRCGDP--------------RADFG-GAGYGGGR-------GGS--------------------------SSFGFTTGP
        RPGDWNC  C   NFQRR SC RC  P                DF  G  YG G        GGS                          SS  F    
Subjt:  RPGDWNCRSCNHLNFQRRDSCHRCGDP--------------RADFG-GAGYGGGR-------GGS--------------------------SSFGFTTGP

Query:  DVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAA
          R GDW C    CG HNFA    C +CGAS+  A+  A
Subjt:  DVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAA

P32770 Asparagine-rich protein2.4e-0466.67Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCHRCGDP
        RPGDWNC SC   NFQRR +C RC  P
Subjt:  RPGDWNCRSCNHLNFQRRDSCHRCGDP

Q27294 RNA-binding protein cabeza5.7e-0646.67Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCHRCGDPRAD-------FGGAGYGGGRGGSSSFGFTTGPD
        R GDW C SCN+ NF  R+ C+RC  P+ D        GG GYGGG GG    G+  G D
Subjt:  RPGDWNCRSCNHLNFQRRDSCHRCGDPRAD-------FGGAGYGGGRGGSSSFGFTTGPD

Q92804 TATA-binding protein-associated factor 2N2.4e-0435.54Show/hide
Query:  RPGDWNC--RSCNHLNFQRRDSCHRCGDPR--------ADFGGAGYGG-----GRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKD
        + GDW C   SC ++NF RR+SC++C +PR         DF G GYGG     GRGG        G D R G  Y    + G      RS     G    
Subjt:  RPGDWNC--RSCNHLNFQRRDSCHRCGDPR--------ADFGGAGYGG-----GRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKD

Query:  EASAAAYDGDLSRIRGFNFGG
        + S   Y GD    RG  +GG
Subjt:  EASAAAYDGDLSRIRGFNFGG

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein1.5e-0630.11Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYD
        + GDW C++CN LNF +   C RC D                       T   + PG+W C   +C   NF   SIC KC   + +A+    D
Subjt:  RPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYD

AT2G17975.1 zinc finger (Ran-binding) family protein4.3e-0932.88Show/hide
Query:  RPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPD----VRPGDWYCAVANCGAHNFASRSICFKCGASKDEA--SAAAYDG
        R GDW C  C + N+  R  C+RC  PR                     T P+     R GDW C    C  +N+ASR  C KCG SK+ A  SA A  G
Subjt:  RPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPD----VRPGDWYCAVANCGAHNFASRSICFKCGASKDEA--SAAAYDG

Query:  D--LSRIRGFNFGGAS-NCPG-----------------WKSGDWIC
            + +  F  G  S + PG                 W+SGDWIC
Subjt:  D--LSRIRGFNFGGAS-NCPG-----------------WKSGDWIC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein2.0e-2240.83Show/hide
Query:  GDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGF
        GDW C +C H NF++R+SC +CG P+  FGG           S       +V  GDWYC   NCG+HN+ASR+ C++CG  K E +   Y    +++  +
Subjt:  GDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGF

Query:  NFGGASNCPGWKSGDWICAR
           GA+  PGWK+GDW+C R
Subjt:  NFGGASNCPGWKSGDWICAR

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein1.5e-4162.59Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAG---YG--GGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASA----
        MSRPGDWNCRSC+HLNFQRRDSC RCGD R+  GG G   +G  GGR   S+FGFTTG DVRPGDWYC V NCG HNFASRS CFKCG  KDE  A    
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAG---YG--GGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASA----

Query:  ------AAYDGDLSRIRGFNFGGASNCPGWKSGDWICAR
              A +D D+ R R    GG S+   WKSGDWIC R
Subjt:  ------AAYDGDLSRIRGFNFGGASNCPGWKSGDWICAR

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein4.0e-3959.72Show/hide
Query:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGG------AGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDE---ASA
        M+RPGDWNCR C+HLNFQRRDSC RC +PR   GG      +G+ GGR  SSSFGF TGPDVRPGDWYC + +CG HNFA+RS CFKCGA+KDE   +SA
Subjt:  MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGG------AGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDE---ASA

Query:  AAYDGDLSRIRG-----FNFGGASNCPG------WKSGDWICAR
        AA  G +    G     F FGG+S+  G      WKSGDWIC R
Subjt:  AAYDGDLSRIRG-----FNFGGASNCPG------WKSGDWICAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCGCCCTGGAGATTGGAATTGCAGGTCATGCAACCATCTCAACTTCCAAAGGAGGGACTCCTGCCACCGCTGTGGCGACCCTAGGGCTGACTTCGGCGGC
GCTGGCTACGGCGGTGGAAGAGGTGGTTCTTCCTCCTTTGGGTTCACCACCGGCCCCGACGTCCGCCCTGGCGATTGGTACTGCGCTGTCGCTAACTGCGGCGCT
CATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGAGCCTCCAAGGATGAAGCTTCCGCCGCCGCCTACGACGGCGATTTGTCCCGAATCAGAGGCTTTAAC
TTCGGCGGTGCCTCCAACTGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCCGCCCTGGAGATTGGAATTGCAGGTCATGCAACCATCTCAACTTCCAAAGGAGGGACTCCTGCCACCGCTGTGGCGACCCTAGGGCTGACTTCGGCGGC
GCTGGCTACGGCGGTGGAAGAGGTGGTTCTTCCTCCTTTGGGTTCACCACCGGCCCCGACGTCCGCCCTGGCGATTGGTACTGCGCTGTCGCTAACTGCGGCGCT
CATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGAGCCTCCAAGGATGAAGCTTCCGCCGCCGCCTACGACGGCGATTTGTCCCGAATCAGAGGCTTTAAC
TTCGGCGGTGCCTCCAACTGCCCTGGATGGAAATCTGGTGATTGGATCTGTGCCAGGTAG
Protein sequenceShow/hide protein sequence
MSRPGDWNCRSCNHLNFQRRDSCHRCGDPRADFGGAGYGGGRGGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDEASAAAYDGDLSRIRGFN
FGGASNCPGWKSGDWICAR