; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G002980 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G002980
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionserine-rich protein-related
Genome locationCmo_Chr12:1876490..1876984
RNA-Seq ExpressionCmoCh12G002980
SyntenyCmoCh12G002980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585483.1 hypothetical protein SDJN03_18216, partial [Cucurbita argyrosperma subsp. sororia]4.7e-8298.17Show/hide
Query:  MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA
        MNNETSGPVLRPLPAGGGGGF+STFFHNHRRSASSRVNISSSPM HSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQ LSA
Subjt:  MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA

Query:  YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
        YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
Subjt:  YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN

KAG6598561.1 Protein MEMO1, partial [Cucurbita argyrosperma subsp. sororia]3.6e-5067.02Show/hide
Query:  MNNETSGPVLRPLPAGG--------------GGGFNST---FFHNHRRSAS-SRVNISSSPMSHSVRFSLGH------RSIAVSNRNSPVSQP---CMCS
        M  ETSGPVLRPLPA G                GF+ST   FFHNH RSAS +RVNISS P+S SVRFS+ H      RSIA+SNRNSPVSQP   C CS
Subjt:  MNNETSGPVLRPLPAGG--------------GGGFNST---FFHNHRRSAS-SRVNISSSPMSHSVRFSLGH------RSIAVSNRNSPVSQP---CMCS

Query:  PTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE
        PT HPGSFRCSLH+N G+  HHQT   +SS  LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ RRRANF+ RPSRLS +S+
Subjt:  PTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE

KAG7020398.1 hypothetical protein SDJN02_17082, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-8197.56Show/hide
Query:  MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA
        MNNETSGPVLRPLPAGGGGGF+STFFHNHRRSASSRVNISSSPM HSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQ LS 
Subjt:  MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA

Query:  YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
        YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
Subjt:  YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN

XP_022951456.1 uncharacterized protein LOC111454267 [Cucurbita moschata]5.0e-84100Show/hide
Query:  MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA
        MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA
Subjt:  MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA

Query:  YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
        YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
Subjt:  YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN

XP_023547160.1 uncharacterized protein LOC111806049 [Cucurbita pepo subsp. pepo]9.6e-5167.91Show/hide
Query:  MNNETSGPVLRPLPAGG--------------GGGFNST---FFHNHRRSAS-SRVNISSSPMSHSVRFSLGH------RSIAVSNRNSPVSQP---CMCS
        M  ETSGPVLRPLPA G                GF+ST   FFHNH RSAS +RVNISS P+S SVRFS+ H      RSIA+SNRNSPVSQP   C CS
Subjt:  MNNETSGPVLRPLPAGG--------------GGGFNST---FFHNHRRSAS-SRVNISSSPMSHSVRFSLGH------RSIAVSNRNSPVSQP---CMCS

Query:  PTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMS
        PT HPGSFRCSLH+N G+  HHQT   YSS  LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ RRRANF+ RPSRLS +S
Subjt:  PTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMS

TrEMBL top hitse value%identityAlignment
A0A1S3BC71 nuclear transcription factor Y subunit gamma-like1.8e-4763.45Show/hide
Query:  MNNETSGPVLRPLPAGG------------------GGGF---NSTFF-------HNHRRSAS-SRVNISSSPMSHSVRFSLGHRSIA--VSNRNSPVS--
        M  ETSGPVLRP PAGG                    GF   +STF        HNH RSAS +RVNISS+P+S SVRFS+GHRS +  +SNRNSPVS  
Subjt:  MNNETSGPVLRPLPAGG------------------GGGF---NSTFF-------HNHRRSAS-SRVNISSSPMSHSVRFSLGHRSIA--VSNRNSPVS--

Query:  -QPCMCSPTNHPGSFRCSLHKNGGSS--RHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE
         +PCMCSPT HPGSFRCSLHK  GS   +H  + SAYSS  LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ RRRANF+ +PSRLS MS+
Subjt:  -QPCMCSPTNHPGSFRCSLHKNGGSS--RHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE

A0A5A7VCJ2 Nuclear transcription factor Y subunit gamma-like1.8e-4763.45Show/hide
Query:  MNNETSGPVLRPLPAGG------------------GGGF---NSTFF-------HNHRRSAS-SRVNISSSPMSHSVRFSLGHRSIA--VSNRNSPVS--
        M  ETSGPVLRP PAGG                    GF   +STF        HNH RSAS +RVNISS+P+S SVRFS+GHRS +  +SNRNSPVS  
Subjt:  MNNETSGPVLRPLPAGG------------------GGGF---NSTFF-------HNHRRSAS-SRVNISSSPMSHSVRFSLGHRSIA--VSNRNSPVS--

Query:  -QPCMCSPTNHPGSFRCSLHKNGGSS--RHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE
         +PCMCSPT HPGSFRCSLHK  GS   +H  + SAYSS  LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ RRRANF+ +PSRLS MS+
Subjt:  -QPCMCSPTNHPGSFRCSLHKNGGSS--RHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE

A0A6J1GHM5 uncharacterized protein LOC1114542672.4e-84100Show/hide
Query:  MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA
        MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA
Subjt:  MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA

Query:  YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
        YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN
Subjt:  YSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN

A0A6J1HGM5 uncharacterized protein LOC1114627803.9e-5067.02Show/hide
Query:  MNNETSGPVLRPLPAGG--------------GGGFNST---FFHNHRRSAS-SRVNISSSPMSHSVRFSLGH------RSIAVSNRNSPVSQP---CMCS
        M  ETSGPVLRPLPA G                GF+ST   FFHN  RSAS +RVNISS P+S SVRFS+ H      RSIA+SNRNSPVSQP   C CS
Subjt:  MNNETSGPVLRPLPAGG--------------GGGFNST---FFHNHRRSAS-SRVNISSSPMSHSVRFSLGH------RSIAVSNRNSPVSQP---CMCS

Query:  PTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE
        PT HPGSFRCSLH+N G+  HHQT   YSS  LNMRRSAMTNSLVRIGGVEGD V RALTALIRPSSHQ RRRANF+ RPSRLS +S+
Subjt:  PTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE

A0A6J1K7C8 uncharacterized protein LOC1114918133.9e-5068.89Show/hide
Query:  MNNETSGPVLRPLPAGG------GGGFNST---FFHNHRRSAS-SRVNISSSPMSHSVRFSLGH------RSIAVSNRNSPVSQP---CMCSPTNHPGSF
        M  ETSGPVLRPLPA G        GF+ST   FFHNH R+AS +RVNISSSP+S SVRFS+ H      RSI +SNRNSPVS P   C CSPT HPGSF
Subjt:  MNNETSGPVLRPLPAGG------GGGFNST---FFHNHRRSAS-SRVNISSSPMSHSVRFSLGH------RSIAVSNRNSPVSQP---CMCSPTNHPGSF

Query:  RCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE
        RCSLH+N G+  HHQT   YSS  LNMRRSAM NSLVRIGGVEGD V RALTALIRPSSHQ RRRANF+ RPSRLS +S+
Subjt:  RCSLHKNGGSSRHHQTLSAYSSRRLNMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G13227.1 serine-rich protein-related9.4e-0451.43Show/hide
Query:  GHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHK
        G  S+ +S ++S V Q C+C+PT HPGSFRC  H+
Subjt:  GHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHK

AT5G11090.1 serine-rich protein-related6.0e-3557.72Show/hide
Query:  HNHRRSAS-SRVNI-SSSPMSHSVRFSLGHRSIAVSNR------------NSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSA
        H+H RSAS +RVN+ ++ PMS S R+SL  RSI+ +N+            N  +S+ CMCSPT HPGSFRCSLHKN  ++ H Q  ++Y++  LNMRRSA
Subjt:  HNHRRSAS-SRVNI-SSSPMSHSVRFSLGHRSIAVSNR------------NSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRRSA

Query:  MTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE
        MTNSLVRIGGVEG+ V RALT LIRPSSH  +RRA +Q RPSRLS M++
Subjt:  MTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE

AT5G20370.1 serine-rich protein-related7.2e-1233.14Show/hide
Query:  TSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRF----SLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA
        +S  VLRPL        ++   H+HR+ + S  N     ++  ++F    S+   S+   + N    + C+CSPT HPGSFRCS H+     +  +TL++
Subjt:  TSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRF----SLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSA

Query:  YSSRR-------------LNMRRSAMTNSLVRIGGVEGDLVNRALTA-LIRPSSHQQRRRANFQSRPSR
         + +R             LN+R+ A+ NSL +IG VE +   R+L A L +PSS    RR  F+ R SR
Subjt:  YSSRR-------------LNMRRSAMTNSLVRIGGVEGDLVNRALTA-LIRPSSHQQRRRANFQSRPSR

AT5G25280.1 serine-rich protein-related3.7e-3252.9Show/hide
Query:  NSTFFHNHRRSASSRVNI-SSSPMSHSVRFSLGHRSIAVSNRNSPVS--------------QPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRL
        N    H HR ++ +RVN+ +S+PM+ S R+S+ +RSI+  NR+  VS              + CMCSPT HPGSFRCSLHKN  ++ H Q  ++Y++  L
Subjt:  NSTFFHNHRRSASSRVNI-SSSPMSHSVRFSLGHRSIAVSNRNSPVS--------------QPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRL

Query:  NMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE
        NMRRSAMTNSLVRIGGVEG+ V RALT LIRPSSHQ +RR+ ++ R SRL++MS+
Subjt:  NMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE

AT5G25280.2 serine-rich protein-related3.7e-3252.9Show/hide
Query:  NSTFFHNHRRSASSRVNI-SSSPMSHSVRFSLGHRSIAVSNRNSPVS--------------QPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRL
        N    H HR ++ +RVN+ +S+PM+ S R+S+ +RSI+  NR+  VS              + CMCSPT HPGSFRCSLHKN  ++ H Q  ++Y++  L
Subjt:  NSTFFHNHRRSASSRVNI-SSSPMSHSVRFSLGHRSIAVSNRNSPVS--------------QPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRL

Query:  NMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE
        NMRRSAMTNSLVRIGGVEG+ V RALT LIRPSSHQ +RR+ ++ R SRL++MS+
Subjt:  NMRRSAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACGAAACAAGCGGCCCTGTTCTCCGGCCACTTCCCGCCGGCGGCGGCGGCGGATTTAACTCCACGTTCTTCCACAACCACCGTCGATCTGCTTCTTCTCGAGT
GAACATCTCTTCCTCTCCCATGTCTCACTCTGTTCGATTTTCCCTAGGTCACCGGTCCATCGCCGTCTCAAATCGGAACTCGCCGGTTTCTCAGCCGTGTATGTGTTCGC
CGACGAACCACCCCGGCTCCTTCCGGTGCAGTCTGCATAAAAATGGCGGCAGTAGCCGACACCATCAGACGTTGTCGGCGTATTCGTCGAGGCGTTTGAATATGCGGCGG
TCTGCAATGACGAACTCGCTCGTGAGAATCGGTGGCGTTGAAGGAGACTTGGTCAACCGAGCGTTGACTGCTTTGATTCGACCTTCTTCGCACCAACAGCGACGGAGAGC
CAATTTTCAGTCGCGCCCCAGCCGGCTTTCGGCCATGTCCGAAAATCATAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAACGAAACAAGCGGCCCTGTTCTCCGGCCACTTCCCGCCGGCGGCGGCGGCGGATTTAACTCCACGTTCTTCCACAACCACCGTCGATCTGCTTCTTCTCGAGT
GAACATCTCTTCCTCTCCCATGTCTCACTCTGTTCGATTTTCCCTAGGTCACCGGTCCATCGCCGTCTCAAATCGGAACTCGCCGGTTTCTCAGCCGTGTATGTGTTCGC
CGACGAACCACCCCGGCTCCTTCCGGTGCAGTCTGCATAAAAATGGCGGCAGTAGCCGACACCATCAGACGTTGTCGGCGTATTCGTCGAGGCGTTTGAATATGCGGCGG
TCTGCAATGACGAACTCGCTCGTGAGAATCGGTGGCGTTGAAGGAGACTTGGTCAACCGAGCGTTGACTGCTTTGATTCGACCTTCTTCGCACCAACAGCGACGGAGAGC
CAATTTTCAGTCGCGCCCCAGCCGGCTTTCGGCCATGTCCGAAAATCATAATTGA
Protein sequenceShow/hide protein sequence
MNNETSGPVLRPLPAGGGGGFNSTFFHNHRRSASSRVNISSSPMSHSVRFSLGHRSIAVSNRNSPVSQPCMCSPTNHPGSFRCSLHKNGGSSRHHQTLSAYSSRRLNMRR
SAMTNSLVRIGGVEGDLVNRALTALIRPSSHQQRRRANFQSRPSRLSAMSENHN