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CmoCh12G003660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G003660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionauxin-responsive protein SAUR50-like
Genome locationCmo_Chr12:2271894..2272232
RNA-Seq ExpressionCmoCh12G003660
SyntenyCmoCh12G003660
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585548.1 Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. sororia]1.7e-5498.21Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
        MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLST EFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ

Query:  SLLRSIESNQTE
        SLLRSIESN+TE
Subjt:  SLLRSIESNQTE

KAG7020460.1 Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-48100Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
        MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK

XP_022951771.1 auxin-responsive protein SAUR50-like [Cucurbita moschata]6.8e-56100Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
        MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ

Query:  SLLRSIESNQTE
        SLLRSIESNQTE
Subjt:  SLLRSIESNQTE

XP_023002557.1 auxin-responsive protein SAUR50-like [Cucurbita maxima]4.5e-5293.04Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
        MAV++RLSQAAVVKQIMKRCSSLRNKKTHQCGGA   GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK

Query:  VFQSLLRSIESNQTE
        VFQSLLR+IESN+ E
Subjt:  VFQSLLRSIESNQTE

XP_023538452.1 auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo]2.0e-5599.11Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
        MAVTSRLSQAAVVKQIMKRCSSLRNKK+HQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ

Query:  SLLRSIESNQTE
        SLLRSIESNQTE
Subjt:  SLLRSIESNQTE

TrEMBL top hitse value%identityAlignment
A0A0A0LRM7 Uncharacterized protein9.3e-3573.21Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLR---------NKKTH-QCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGL
        MAV+++L+  AVVKQI KRCSSLR         N  TH QCG  GG +IPVDVPKGHFVVYV ENRSRYIVP+TFL+ PEFQILLQLAEEEFGFSH+MGL
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLR---------NKKTH-QCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGL

Query:  TIPCDEKVFQSL
        TIPC+E+VFQSL
Subjt:  TIPCDEKVFQSL

A0A5A7VD05 Auxin-induced protein 15A-like1.6e-3471.93Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLR----------NKKTH--QCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM
        MAV+++L+  AVVKQI KRCSSLR          N  TH  QCGG GG +IPVDVPKGHFVVYV ENRSRYIVP+TFL+ PEFQILLQLAEEEFGFSH M
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLR----------NKKTH--QCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM

Query:  GLTIPCDEKVFQSL
        GLTIPC+E+VF+SL
Subjt:  GLTIPCDEKVFQSL

A0A6J1GIF7 auxin-responsive protein SAUR50-like3.3e-56100Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
        MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ

Query:  SLLRSIESNQTE
        SLLRSIESNQTE
Subjt:  SLLRSIESNQTE

A0A6J1K8F3 auxin-responsive protein SAUR50-like7.1e-3578.79Show/hide
Query:  AVVKQIMKRCSSLRNKKTH----QCGGAGG---GDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSL
        AVVKQIMKRCS LR+ K      QCGG GG   G+IPVDVPKGHFVVYV ENRSRYIVP+T L++PEFQILLQLAEEEFGFSHHMGLTIPC+E+VFQSL
Subjt:  AVVKQIMKRCSSLRNKKTH----QCGGAGG---GDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSL

A0A6J1KJU9 auxin-responsive protein SAUR50-like2.2e-5293.04Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
        MAV++RLSQAAVVKQIMKRCSSLRNKKTHQCGGA   GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEK

Query:  VFQSLLRSIESNQTE
        VFQSLLR+IESN+ E
Subjt:  VFQSLLRSIESNQTE

SwissProt top hitse value%identityAlignment
O65695 Auxin-responsive protein SAUR501.6e-3166.04Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
        M  TS+L+Q A++KQI+KRCSSL  K     GG     +P+DVPKGHF VYVGENRSRYIVP++FL+ PEFQ LLQ AEEEFGF H MGLTIPCDE VFQ
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ

Query:  SLLRSI
        +L   I
Subjt:  SLLRSI

P0DKL1 Auxin-responsive protein SAUR501.9e-2153.54Show/hide
Query:  SQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSLLRSI
        +QA  +K+I+K+CSS   K     G      +P DVPKGHFVVYVGE R+RYIVP++ L  P FQ LLQ +EEEFGF+H MG+ IPC E  F S    I
Subjt:  SQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSLLRSI

P33081 Auxin-induced protein 15A1.3e-1458.06Show/hide
Query:  DVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM-GLTIPCDEKVFQSL
        D PKG+  VYVGE   R+++PV++L+ P FQ LL  AEEEFG+ H M GLTIPC E VFQ +
Subjt:  DVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM-GLTIPCDEKVFQSL

P33082 Auxin-induced protein X154.6e-1557.14Show/hide
Query:  VDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM-GLTIPCDEKVFQSL
        VD PKG+  VYVGE   R+++PV++++ P FQ LL  AEEEFG+ H M GLTIPC E+VFQ +
Subjt:  VDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHM-GLTIPCDEKVFQSL

Q9SL45 Protein SMALL AUXIN UP-REGULATED RNA 101.6e-2865.98Show/hide
Query:  SQAAVVKQIMKRCSSLRN-KKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSLL
        SQAA +KQI+KRCSSLR  K  + C      D+P DVPKGHF VYVG NRSRYIVP+++L   EFQ LL+LAEEEFGF H MGLTIPCDE  F+SL+
Subjt:  SQAAVVKQIMKRCSSLRN-KKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSLL

Arabidopsis top hitse value%identityAlignment
AT1G19830.1 SAUR-like auxin-responsive protein family2.8e-3158.1Show/hide
Query:  SRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQS
        S+L+Q  ++KQI+KRCSSL  K++ +        G  +P+DVPKGHFVVYVG NR RY++P++FL+ PEFQ+LLQ AEEEFGF H+MGLTIPC+E  F+S
Subjt:  SRLSQAAVVKQIMKRCSSLRNKKTHQCGGA---GGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQS

Query:  LLRSI
        L+ S+
Subjt:  LLRSI

AT1G75580.1 SAUR-like auxin-responsive protein family1.2e-3162.75Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
        M   ++L+Q A++KQI+KRCSSL  K+++  G    G  P++VPKGHFVVYVGENR RY+VP++FL+ PEFQ+LLQ AEEEFGF H MGLTIPC+E VF+
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ

Query:  SL
        SL
Subjt:  SL

AT2G18010.1 SAUR-like auxin-responsive protein family1.2e-2965.98Show/hide
Query:  SQAAVVKQIMKRCSSLRN-KKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSLL
        SQAA +KQI+KRCSSLR  K  + C      D+P DVPKGHF VYVG NRSRYIVP+++L   EFQ LL+LAEEEFGF H MGLTIPCDE  F+SL+
Subjt:  SQAAVVKQIMKRCSSLRN-KKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSLL

AT2G21220.1 SAUR-like auxin-responsive protein family3.1e-3063.11Show/hide
Query:  TSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSLL
        +S+L+Q A++KQI+KRCSSL     +QC    G  +PVDVPKGHF VYVGE RSRYIVP++FL+ P+F+ LLQ AEEEFGF+H MGLTIPC+E VF+SL 
Subjt:  TSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSLL

Query:  RSI
          I
Subjt:  RSI

AT4G34760.1 SAUR-like auxin-responsive protein family1.1e-3266.04Show/hide
Query:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ
        M  TS+L+Q A++KQI+KRCSSL  K     GG     +P+DVPKGHF VYVGENRSRYIVP++FL+ PEFQ LLQ AEEEFGF H MGLTIPCDE VFQ
Subjt:  MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQ

Query:  SLLRSI
        +L   I
Subjt:  SLLRSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTGACCAGCAGACTGTCACAGGCGGCGGTGGTCAAGCAAATTATGAAGCGCTGTTCCAGTTTAAGAAATAAAAAGACTCACCAATGCGGCGGCGCTGGCGGCGG
AGATATCCCGGTGGATGTTCCCAAAGGCCATTTTGTAGTGTATGTGGGTGAGAATAGAAGCCGGTACATTGTGCCGGTGACGTTTCTGTCGACGCCGGAGTTTCAGATTC
TTCTCCAATTGGCTGAGGAAGAGTTCGGGTTTAGTCACCATATGGGCCTCACTATCCCGTGCGACGAGAAGGTTTTTCAGTCTCTACTCCGATCGATTGAGTCGAACCAA
ACCGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGTGACCAGCAGACTGTCACAGGCGGCGGTGGTCAAGCAAATTATGAAGCGCTGTTCCAGTTTAAGAAATAAAAAGACTCACCAATGCGGCGGCGCTGGCGGCGG
AGATATCCCGGTGGATGTTCCCAAAGGCCATTTTGTAGTGTATGTGGGTGAGAATAGAAGCCGGTACATTGTGCCGGTGACGTTTCTGTCGACGCCGGAGTTTCAGATTC
TTCTCCAATTGGCTGAGGAAGAGTTCGGGTTTAGTCACCATATGGGCCTCACTATCCCGTGCGACGAGAAGGTTTTTCAGTCTCTACTCCGATCGATTGAGTCGAACCAA
ACCGAATGA
Protein sequenceShow/hide protein sequence
MAVTSRLSQAAVVKQIMKRCSSLRNKKTHQCGGAGGGDIPVDVPKGHFVVYVGENRSRYIVPVTFLSTPEFQILLQLAEEEFGFSHHMGLTIPCDEKVFQSLLRSIESNQ
TE