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CmoCh12G004040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G004040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSm protein F
Genome locationCmo_Chr12:2516505..2518640
RNA-Seq ExpressionCmoCh12G004040
SyntenyCmoCh12G004040
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016487 - Sm-like protein Lsm6/SmF
IPR034100 - Small nuclear ribonucleoprotein F


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598461.1 Inositol-pentakisphosphate 2-kinase, partial [Cucurbita argyrosperma subsp. sororia]2.0e-3884.16Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE

Query:  R
        R
Subjt:  R

XP_004146017.2 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus]9.9e-3883.33Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+EDAE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE

Query:  RD
        RD
Subjt:  RD

XP_022144158.1 probable small nuclear ribonucleoprotein F [Momordica charantia]8.4e-3781.37Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+ED E
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE

Query:  RD
        R+
Subjt:  RD

XP_022951684.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]3.1e-3985.29Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE

Query:  RD
        RD
Subjt:  RD

XP_022961705.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]5.2e-3984.31Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE

Query:  RD
        RD
Subjt:  RD

TrEMBL top hitse value%identityAlignment
A0A1S3CKH5 Sm protein F4.8e-3883.33Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+EDAE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE

Query:  RD
        RD
Subjt:  RD

A0A5D3DWN8 Sm protein F4.8e-3883.33Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRGVPEDEE+EDAE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE

Query:  RD
        RD
Subjt:  RD

A0A6J1GJI4 Sm protein F1.5e-3985.29Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE

Query:  RD
        RD
Subjt:  RD

A0A6J1HD26 Sm protein F2.5e-3984.31Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE

Query:  RD
        RD
Subjt:  RD

A0A6J1KQT2 Sm protein F2.5e-3984.31Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVD               SYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE+EDAE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAE

Query:  RD
        RD
Subjt:  RD

SwissProt top hitse value%identityAlignment
P62306 Small nuclear ribonucleoprotein F2.7e-3067.37Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD                YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE

P62307 Small nuclear ribonucleoprotein F2.7e-3067.37Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD                YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE

P62321 Small nuclear ribonucleoprotein F2.7e-3067.37Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD                YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE

Q3T0Z8 Small nuclear ribonucleoprotein F2.7e-3067.37Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD                YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RGV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEE

Q9SUM2 Probable small nuclear ribonucleoprotein F1.3e-3776.24Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAER
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVD               SYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAER

Query:  D
        D
Subjt:  D

Arabidopsis top hitse value%identityAlignment
AT2G14285.1 Small nuclear ribonucleoprotein family protein1.5e-2371.05Show/hide
Query:  MEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD
        MEYKGFL SVD               SYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++D
Subjt:  MEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD

AT2G43810.1 Small nuclear ribonucleoprotein family protein1.9e-1038.27Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L                C   YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL

AT2G43810.2 Small nuclear ribonucleoprotein family protein1.9e-1038.27Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L                C   YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL

AT4G30220.1 small nuclear ribonucleoprotein F9.5e-3976.24Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAER
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVD               SYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAER

Query:  D
        D
Subjt:  D

AT4G30220.2 small nuclear ribonucleoprotein F9.5e-3976.24Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAER
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVD               SYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEELEDA++
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAER

Query:  D
        D
Subjt:  D


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATTCCAGTTAACCCGAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTTGTTGTGAAACTGAAGTGGGGGATGGAGTACAAAGGCTTTCTGGTCTCTGTAGA
CTCGTACATGAACTTACAGGTTTGTTTCTACTTGTATTGTTTCTACTCGTACATGAACTTGCAGCTTGCCAACACCGAGGAATATATTGATGGACAATGTACTGGGAGTC
TCGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGCGGAGTACCAGAGGACGAAGAGCTTGAAGATGCTGAGCGCGACTAA
mRNA sequenceShow/hide mRNA sequence
AGACTCAACGAAAGGGAAAAGGGGAGGGAAAACAAACCCTAGAGAGAAAGAGCGCCATTTTCTTCGTCTCCTCGTTCTTTTGAGCCTCCGTTGATCCCAGAGAAGCGCTT
GCAGATCATTCGGAACCATGAGTATTCCAGTTAACCCGAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTTGTTGTGAAACTGAAGTGGGGGATGGAGTACAAAGGC
TTTCTGGTCTCTGTAGACTCGTACATGAACTTACAGGTTTGTTTCTACTTGTATTGTTTCTACTCGTACATGAACTTGCAGCTTGCCAACACCGAGGAATATATTGATGG
ACAATGTACTGGGAGTCTCGGAGAAATATTGATCAGGTGTAATAATGTTCTTTACCTTCGCGGAGTACCAGAGGACGAAGAGCTTGAAGATGCTGAGCGCGACTAACATG
TAAATTTGTAGCAGCCAGCTCTGCCATGCCATAGTAGCAGCTAAGTTTTCAGCCTTCTAGTTTCCTAGTTTTCCTTTCATCTGCTGCTTAAGTTGCATCTTGTTGCTATT
GGTACTACCTTATAGGACACGATCATTCTCTGCTTTTAGTCGATTTCGAACCTGCACGATCATTCTAGGGAGATTGAATGGTAGAAAAGGAATTCATGAATGTAACATCT
TTGTCTTTATAGCATTGAAATGCTTCATTTTTTCAACATAAGATAAGCTAGAGCGTTACATAAATCTTTCATGTGGAATGCAATGCAATGACATATATTTGTAATATCAT
TAGCTTTGAGTTTTGGATAAAATCTGTATCCATTGTTATTTATTATATTACAATTGATTTTTAGATTGGAGCTCA
Protein sequenceShow/hide protein sequence
MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQVCFYLYCFYSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEELEDAERD