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CmoCh12G004150 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G004150
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionProtein RER1B-like
Genome locationCmo_Chr12:2554658..2555862
RNA-Seq ExpressionCmoCh12G004150
SyntenyCmoCh12G004150
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585591.1 hypothetical protein SDJN03_18324, partial [Cucurbita argyrosperma subsp. sororia]3.0e-4688.71Show/hide
Query:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP-----GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA
        MTPR YVLIFFFWSLLTVLTPALVFLSESSKTSS SSQSP     GIQMSRK+VGLTRKYE LKVLAEEQTSPA IPTPITAPAP+PSPSPSTALPPGTA
Subjt:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP-----GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA

Query:  VPLRRFMAGAGKVVETTLEGLSIV
        VPLRRF+AGAGKV+ETTL+GLSIV
Subjt:  VPLRRFMAGAGKVVETTLEGLSIV

XP_022951682.1 uncharacterized protein LOC111454425 [Cucurbita moschata]5.3e-5195.97Show/hide
Query:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP-----GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA
        MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP     GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA
Subjt:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP-----GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA

Query:  VPLRRFMAGAGKVVETTLEGLSIV
        VPLRRFMAGAGKVVETTLEGLSIV
Subjt:  VPLRRFMAGAGKVVETTLEGLSIV

XP_022996689.1 uncharacterized protein LOC111491858 isoform X1 [Cucurbita maxima]5.2e-3068.03Show/hide
Query:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP------GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGT
        M PR YVLIFFFWSLLT+LTPAL+ LS++S  SS   Q P      G QMSRK+VGLTRK++MLKVLAE+QT+P  IPTPIT  +P+PSPSP+TA  PG 
Subjt:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP------GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGT

Query:  AVPLRRFMAGAGKVVETTLEGL
        AVP+RRFMAGAGKVV T L+GL
Subjt:  AVPLRRFMAGAGKVVETTLEGL

XP_023002554.1 uncharacterized protein LOC111496365 [Cucurbita maxima]4.1e-4386.29Show/hide
Query:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP-----GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA
        MTPR YVLIFFFWSLLT+LTPALVFLSE+SKTSS SSQSP     GIQMSRKIVGLTRKYEMLKVL EEQTSPAAIPTPITAPAPA    PSTALPPGTA
Subjt:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP-----GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA

Query:  VPLRRFMAGAGKVVETTLEGLSIV
        VPLRRFMAGAGKV+ TTL+GLSIV
Subjt:  VPLRRFMAGAGKVVETTLEGLSIV

XP_023547096.1 uncharacterized protein LOC111806009 isoform X1 [Cucurbita pepo subsp. pepo]1.8e-3068.03Show/hide
Query:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP------GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGT
        M PR YVLIFFFWSLLT+LTPAL+ LS++S  SS + Q P      G QMSRK+VGLTRK++MLKVLAE+QT+P  IPTPIT  AP+PSPSP+TA  PG 
Subjt:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP------GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGT

Query:  AVPLRRFMAGAGKVVETTLEGL
        AVP+RRFMAGAGKV+ T L+GL
Subjt:  AVPLRRFMAGAGKVVETTLEGL

TrEMBL top hitse value%identityAlignment
A0A6J1GIC5 uncharacterized protein LOC1114544252.6e-5195.97Show/hide
Query:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP-----GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA
        MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP     GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA
Subjt:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP-----GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA

Query:  VPLRRFMAGAGKVVETTLEGLSIV
        VPLRRFMAGAGKVVETTLEGLSIV
Subjt:  VPLRRFMAGAGKVVETTLEGLSIV

A0A6J1HBJ3 uncharacterized protein LOC111462508 isoform X15.6e-3065.57Show/hide
Query:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP------GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGT
        M PR YVLIFFFWSLLT+LTPAL+ LS++S  SS + Q P      G QMSRK+VGLTRK++MLKVLAE+QT+P  IPTPITAP+ +PSP+     PPG 
Subjt:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP------GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGT

Query:  AVPLRRFMAGAGKVVETTLEGL
        AVP+RRFMAGAGKV+ T L+GL
Subjt:  AVPLRRFMAGAGKVVETTLEGL

A0A6J1K7I0 uncharacterized protein LOC111491858 isoform X24.3e-3069.23Show/hide
Query:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSS-HSSQSPGIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTAVPLR
        M PR YVLIFFFWSLLT+LTPAL+ LS++S  SS    ++ G QMSRK+VGLTRK++MLKVLAE+QT+P  IPTPIT  +P+PSPSP+TA  PG AVP+R
Subjt:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSS-HSSQSPGIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTAVPLR

Query:  RFMAGAGKVVETTLEGL
        RFMAGAGKVV T L+GL
Subjt:  RFMAGAGKVVETTLEGL

A0A6J1K9F2 uncharacterized protein LOC111491858 isoform X12.5e-3068.03Show/hide
Query:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP------GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGT
        M PR YVLIFFFWSLLT+LTPAL+ LS++S  SS   Q P      G QMSRK+VGLTRK++MLKVLAE+QT+P  IPTPIT  +P+PSPSP+TA  PG 
Subjt:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP------GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGT

Query:  AVPLRRFMAGAGKVVETTLEGL
        AVP+RRFMAGAGKVV T L+GL
Subjt:  AVPLRRFMAGAGKVVETTLEGL

A0A6J1KQS2 uncharacterized protein LOC1114963652.0e-4386.29Show/hide
Query:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP-----GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA
        MTPR YVLIFFFWSLLT+LTPALVFLSE+SKTSS SSQSP     GIQMSRKIVGLTRKYEMLKVL EEQTSPAAIPTPITAPAPA    PSTALPPGTA
Subjt:  MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSP-----GIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTA

Query:  VPLRRFMAGAGKVVETTLEGLSIV
        VPLRRFMAGAGKV+ TTL+GLSIV
Subjt:  VPLRRFMAGAGKVVETTLEGLSIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCCTCGAACCTATGTTTTAATCTTCTTCTTCTGGTCTCTCCTCACCGTTCTCACTCCCGCCCTCGTTTTCCTCTCCGAGAGTTCAAAAACGTCGTCCCACTCGTC
CCAATCTCCAGGGATTCAAATGAGTAGAAAAATTGTGGGATTGACCAGAAAATATGAGATGTTGAAAGTTTTGGCAGAAGAACAGACCTCACCGGCGGCGATCCCAACAC
CAATTACAGCACCGGCGCCGGCGCCGTCACCGTCGCCATCGACTGCTCTGCCTCCGGGAACCGCCGTGCCGTTACGGAGGTTCATGGCTGGTGCTGGAAAGGTCGTAGAG
ACGACGTTGGAGGGTCTGAGTATTGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGACCCCTCGAACCTATGTTTTAATCTTCTTCTTCTGGTCTCTCCTCACCGTTCTCACTCCCGCCCTCGTTTTCCTCTCCGAGAGTTCAAAAACGTCGTCCCACTCGTC
CCAATCTCCAGGGATTCAAATGAGTAGAAAAATTGTGGGATTGACCAGAAAATATGAGATGTTGAAAGTTTTGGCAGAAGAACAGACCTCACCGGCGGCGATCCCAACAC
CAATTACAGCACCGGCGCCGGCGCCGTCACCGTCGCCATCGACTGCTCTGCCTCCGGGAACCGCCGTGCCGTTACGGAGGTTCATGGCTGGTGCTGGAAAGGTCGTAGAG
ACGACGTTGGAGGGTCTGAGTATTGTATGA
Protein sequenceShow/hide protein sequence
MTPRTYVLIFFFWSLLTVLTPALVFLSESSKTSSHSSQSPGIQMSRKIVGLTRKYEMLKVLAEEQTSPAAIPTPITAPAPAPSPSPSTALPPGTAVPLRRFMAGAGKVVE
TTLEGLSIV