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CmoCh12G004170 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G004170
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein RADIALIS-like 4
Genome locationCmo_Chr12:2564943..2565224
RNA-Seq ExpressionCmoCh12G004170
SyntenyCmoCh12G004170
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585593.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]1.2e-45100Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

XP_022951683.1 protein RADIALIS-like 4 [Cucurbita moschata]1.2e-45100Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]4.0e-3886.02Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDILV DLMHIESGK+PLP YKPI SN  V GDEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

XP_023002562.1 protein RADIALIS-like 4 [Cucurbita maxima]7.6e-4597.85Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI SNSIVCGDEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

XP_023538249.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]2.6e-4598.92Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

TrEMBL top hitse value%identityAlignment
A0A5A7VC75 Protein RADIALIS-like 42.6e-3580.65Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MAS++F+SSG+SSSSWT KQNKKFEDAL  YPEDTPDRWQKVARAVGGKTAEEVKRHYDIL+ DLMHIESGKVPLP YKP+  N  +  DEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

A0A6J1GIE7 protein RADIALIS-like 45.7e-46100Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

A0A6J1HFA3 protein RADIALIS-like 42.0e-3886.02Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDILV DLMHIESGK+PLP YKPI SN  V GDEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

A0A6J1K2Q1 protein RADIALIS-like 42.0e-3886.02Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDILV DLMHIESGK+PLP YKPI SN  V GDEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

A0A6J1KJV3 protein RADIALIS-like 43.7e-4597.85Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR
        MASNTFRSSGSSSS+WTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI SNSIVCGDEQR
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 18.0e-2162.03Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYK
        MAS++   S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LV D+  IE+G VP P Y+
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYK

Q1A173 Protein RADIALIS-like 65.9e-2468.24Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS
        MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDILV DL++IE+G+VPLP YK   SNS
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS

Q6NNN0 Protein RADIALIS-like 36.1e-2160.71Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASN
        MASN    S SSS+SWT K+NK FE ALA Y +DTPDRW  VARAVGGK+AEEV+RHY++L+ D+  IESG+ P P Y+   +N
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASN

Q8GW75 Protein RADIALIS-like 52.0e-2475.68Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI
        SS SSSSSWT KQNK FE ALA Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV DLM+IE   VPLPKYK +
Subjt:  SSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI

Q9SIJ5 Protein RADIALIS-like 21.6e-2162.35Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS
        MAS +  S G  S SWT KQNK FE ALA Y +DTPDRW  VARAVGGKT EE KR YD+LV D+  IE+G VP P YK    NS
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.4e-2575.68Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI
        SS SSSSSWT KQNK FE ALA Y +DTPDRWQ VA+AVG K+AEEVKRHYDILV DLM+IE   VPLPKYK +
Subjt:  SSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPI

AT1G75250.1 RAD-like 64.2e-2568.24Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS
        MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDILV DL++IE+G+VPLP YK   SNS
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS

AT1G75250.2 RAD-like 64.2e-2568.24Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS
        MASN    S SS S WT  QNK FE ALA Y +DTPDRW  VA+AVGGKT EEVKRHYDILV DL++IE+G+VPLP YK   SNS
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS

AT2G21650.1 Homeodomain-like superfamily protein1.1e-2262.35Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS
        MAS +  S G  S SWT KQNK FE ALA Y +DTPDRW  VARAVGGKT EE KR YD+LV D+  IE+G VP P YK    NS
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNS

AT4G39250.1 RAD-like 15.7e-2262.03Show/hide
Query:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYK
        MAS++   S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LV D+  IE+G VP P Y+
Subjt:  MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAATACTTTTAGATCTTCAGGCAGTTCAAGCTCCTCATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACA
CCAGACCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCT
GGAAAGGTTCCTCTTCCCAAATACAAGCCCATTGCATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCATCAAATACTTTTAGATCTTCAGGCAGTTCAAGCTCCTCATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACA
CCAGACCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCT
GGAAAGGTTCCTCTTCCCAAATACAAGCCCATTGCATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGTAA
Protein sequenceShow/hide protein sequence
MASNTFRSSGSSSSSWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPIASNSIVCGDEQR