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CmoCh12G004260 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G004260
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionZinc finger and BTB domain-containing protein 47
Genome locationCmo_Chr12:2607315..2610050
RNA-Seq ExpressionCmoCh12G004260
SyntenyCmoCh12G004260
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585603.1 hypothetical protein SDJN03_18336, partial [Cucurbita argyrosperma subsp. sororia]4.7e-2997.3Show/hide
Query:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKLPPPAADVADKPLPKKG
        MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKLPPP ADVADKPL KKG
Subjt:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKLPPPAADVADKPLPKKG

KAG7020516.1 hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-5095.69Show/hide
Query:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKLPPPAADVADKPLPKKGKSTGDEPPISMEGAAKQHESEEPKSG
        MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKLPPP ADVADKPL KKGKSTGDEPP SMEGA+KQHESEEPKSG
Subjt:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKLPPPAADVADKPLPKKGKSTGDEPPISMEGAAKQHESEEPKSG

Query:  DGSRSRGRRKNKPRKN
        DGSRSRGRRKNKPRK+
Subjt:  DGSRSRGRRKNKPRKN

XP_023002541.1 uncharacterized protein LOC111496353 [Cucurbita maxima]3.4e-4893.16Show/hide
Query:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKK-LPPPAADVADKPLPKKGKSTGDEPPISMEGAAKQHESEEPKS
        MGKKKTQKTKQISVAIAETSTSKLPDDGG HGGGQS QPRKRGRPRKVLDEPPDDKK LPPPAADVADKPL KKGK+TGDEPPISMEGA+KQ ESEEPKS
Subjt:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKK-LPPPAADVADKPLPKKGKSTGDEPPISMEGAAKQHESEEPKS

Query:  GDGSRSRGRRKNKPRKN
        GDGSRSRGRRKNKPRK+
Subjt:  GDGSRSRGRRKNKPRKN

XP_023537340.1 uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo]6.9e-4994.02Show/hide
Query:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKK-LPPPAADVADKPLPKKGKSTGDEPPISMEGAAKQHESEEPKS
        MGKKKTQKTKQISVAIAE STSKLPDDGG HGGGQSVQPRKRGRPRKVLDEPPDDKK LPPP ADVADKPL KKGKSTGDEPPISMEGA+KQHESEEPKS
Subjt:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKK-LPPPAADVADKPLPKKGKSTGDEPPISMEGAAKQHESEEPKS

Query:  GDGSRSRGRRKNKPRKN
        GDGSRSRGRRKNKPRK+
Subjt:  GDGSRSRGRRKNKPRKN

XP_038884964.1 uncharacterized protein LOC120075548 [Benincasa hispida]1.6e-2466.67Show/hide
Query:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEP---PDDKKLPPPAADVADKPLPKKGKSTGDEPPI-SMEGAAKQHESEE
        MGKKK QKTK+I+VAIAETS SKL DD    G GQS+QPRKRGRPRKVLDEP    ++KKL PP  +VA+ P  KK K+T D+PP  SME  +KQ    E
Subjt:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEP---PDDKKLPPPAADVADKPLPKKGKSTGDEPPI-SMEGAAKQHESEE

Query:  PKSGDGSRSRGRRKNKPRKN
        PK+GDGSRSRGRRKNKPRK+
Subjt:  PKSGDGSRSRGRRKNKPRKN

TrEMBL top hitse value%identityAlignment
A0A0A0LRH2 Uncharacterized protein1.6e-2262.81Show/hide
Query:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDD---KKLPPPAADVADKPLPKKGKSTGDEPPIS--MEGAAKQHESE
        MGKKKTQKTK+I+VAIAETSTSKL DDG     GQ +QPRKRGRPRKVL+E  ++   KK PPP  +VA+ P  KK K T DE  +   +EG+    + E
Subjt:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDD---KKLPPPAADVADKPLPKKGKSTGDEPPIS--MEGAAKQHESE

Query:  EPKSGDGSRSRGRRKNKPRKN
        EPK+GDGSRSRGRRKNKPRK+
Subjt:  EPKSGDGSRSRGRRKNKPRKN

A0A218X814 Uncharacterized protein3.9e-0542.5Show/hide
Query:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKLPPPAADVA--DKPLPKKGKSTGDEPPISMEGAAKQHESEEPK
        MGKKK QKTK++SVAIAE ++S    D       Q   PRKRGRPRK++   P  ++  P A+D    +K  PK+ K   +E   + E      +SEE  
Subjt:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKLPPPAADVA--DKPLPKKGKSTGDEPPISMEGAAKQHESEEPK

Query:  SGDG-SRSRGRRKN-KPRKN
         G   +RSR RRK+ KPRK+
Subjt:  SGDG-SRSRGRRKN-KPRKN

A0A251R9L0 Uncharacterized protein8.7e-0539.72Show/hide
Query:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDE--------PPDDKKLPPPAADVADKPLPKKGKSTGDE----------PP
        MGKKK QKTK++SVAIAE  ++   D+G      Q   PRKRGRPRK++++         P  ++    A DV ++   KK K+T DE          P 
Subjt:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDE--------PPDDKKLPPPAADVADKPLPKKGKSTGDE----------PP

Query:  I-------SMEGAAKQHESEEPKSGDGSRSRGRRKNKPRKN
        I       S+ G AK+   EE ++   SRSR RRK+KPRK+
Subjt:  I-------SMEGAAKQHESEEPKSGDGSRSRGRRKNKPRKN

A0A5A7VIE6 Zinc finger and BTB domain-containing protein 471.1e-2365.04Show/hide
Query:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDE---PPDDKKLPPP---AADVADKPLPKKGKSTGDEPPISMEGAAKQ-HE
        MGKKKTQKTK+I+VAIAETSTSKL DD    G GQS+QPRKRGRPRKVLDE     ++KKLPPP     +V + P  KK K+T DEPP    G+ K+  +
Subjt:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDE---PPDDKKLPPP---AADVADKPLPKKGKSTGDEPPISMEGAAKQ-HE

Query:  SEEPKSGDGSRSRGRRKNKPRKN
         EEPK+GDGSRSRGRRKNKPRK+
Subjt:  SEEPKSGDGSRSRGRRKNKPRKN

A0A6J1KLK8 uncharacterized protein LOC1114963531.7e-4893.16Show/hide
Query:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKK-LPPPAADVADKPLPKKGKSTGDEPPISMEGAAKQHESEEPKS
        MGKKKTQKTKQISVAIAETSTSKLPDDGG HGGGQS QPRKRGRPRKVLDEPPDDKK LPPPAADVADKPL KKGK+TGDEPPISMEGA+KQ ESEEPKS
Subjt:  MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKK-LPPPAADVADKPLPKKGKSTGDEPPISMEGAAKQHESEEPKS

Query:  GDGSRSRGRRKNKPRKN
        GDGSRSRGRRKNKPRK+
Subjt:  GDGSRSRGRRKNKPRKN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGAAGAAAACCCAGAAAACCAAGCAGATTTCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTACCCGATGATGGCGGCGCCCACGGCGGCGGTCAATCTGT
ACAGCCTAGAAAGAGAGGCCGACCTCGTAAAGTTCTCGATGAGCCACCGGATGACAAGAAGCTACCACCGCCGGCGGCGGATGTTGCGGATAAACCGCTGCCGAAGAAGG
GTAAATCCACCGGAGATGAGCCGCCGATTTCCATGGAAGGAGCTGCGAAGCAACATGAATCGGAAGAACCCAAATCAGGAGATGGATCGAGAAGCAGAGGAAGGAGGAAG
AACAAACCCAGAAAAAATCGGTCTCTTCCTTTCTACGCCCATCTACTTTTCTTCAGATTTACTTCTCTGGTAATTTTCCATCATTTTCTTCGGATAATCTCGTGGTTTCT
GTTCTCATTTCCGACGCAACTTCTGGATACTGATCGGATTTCAATTCCTCGTTTCAAATTGGATTGCGTGAGTCTATTTTTCTATGTAATTCTGAAGCAATACAGATCAT
CACGGGTTTCTTGGCCGGCGGTTGGCTCGCGTGATGTGGATTTGTTCGATTTGTTCGAGGCTGGCAGATTCTTGGAGGAAACATTTAGGATTGAGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGAAGAAAACCCAGAAAACCAAGCAGATTTCAGTCGCCATAGCTGAAACCTCCACCTCCAAATTACCCGATGATGGCGGCGCCCACGGCGGCGGTCAATCTGT
ACAGCCTAGAAAGAGAGGCCGACCTCGTAAAGTTCTCGATGAGCCACCGGATGACAAGAAGCTACCACCGCCGGCGGCGGATGTTGCGGATAAACCGCTGCCGAAGAAGG
GTAAATCCACCGGAGATGAGCCGCCGATTTCCATGGAAGGAGCTGCGAAGCAACATGAATCGGAAGAACCCAAATCAGGAGATGGATCGAGAAGCAGAGGAAGGAGGAAG
AACAAACCCAGAAAAAATCGGTCTCTTCCTTTCTACGCCCATCTACTTTTCTTCAGATTTACTTCTCTGGTAATTTTCCATCATTTTCTTCGGATAATCTCGTGGTTTCT
GTTCTCATTTCCGACGCAACTTCTGGATACTGATCGGATTTCAATTCCTCGTTTCAAATTGGATTGCGTGAGTCTATTTTTCTATGTAATTCTGAAGCAATACAGATCAT
CACGGGTTTCTTGGCCGGCGGTTGGCTCGCGTGATGTGGATTTGTTCGATTTGTTCGAGGCTGGCAGATTCTTGGAGGAAACATTTAGGATTGAGTTGTGA
Protein sequenceShow/hide protein sequence
MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKVLDEPPDDKKLPPPAADVADKPLPKKGKSTGDEPPISMEGAAKQHESEEPKSGDGSRSRGRRK
NKPRKNRSLPFYAHLLFFRFTSLVIFHHFLRIISWFLFSFPTQLLDTDRISIPRFKLDCVSLFFYVILKQYRSSRVSWPAVGSRDVDLFDLFEAGRFLEETFRIEL