CuGenDBv2

Gene ID	CmoCh12G004310
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	PPPDE domain-containing protein
Genome location	Cmo_Chr12:2659246..2661371
RNA-Seq Expression	CmoCh12G004310
Synteny	CmoCh12G004310
Gene Ontology terms	GO:0016579 - protein deubiquitination (biological process) GO:0005794 - Golgi apparatus (cellular component) GO:0016020 - membrane (cellular component) GO:0016740 - transferase activity (molecular function) GO:0101005 - ubiquitinyl hydrolase activity (molecular function)
InterPro domains	IPR008580 - PPPDE peptidase domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6585614.1 DeSI-like protein, partial [Cucurbita argyrosperma subsp. sororia]

6.1e-36

98.73

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Query:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKD
        GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQ+QLSSSSLFLRSPSKGWELKKPNGDPPHASKD
Subjt:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKD

XP_022950991.1 deSI-like protein At4g17486 isoform X1 [Cucurbita moschata]

2.8e-36

100

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Query:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKD
        GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKD
Subjt:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKD

XP_022950992.1 deSI-like protein At4g17486 isoform X2 [Cucurbita moschata]

7.3e-37

100

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Query:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDR
        GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDR
Subjt:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDR

XP_023001911.1 deSI-like protein At4g17486 isoform X2 [Cucurbita maxima]

2.1e-36

96.3

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Query:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDRL
        GSVCNCILPDSLRISAVRHDPT+PPYETERTKLRNASSCLSTISSQQ+QLSSSSLFLRSPSKGWELKKPNGDPPHASKDR+
Subjt:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDRL

XP_023537194.1 deSI-like protein At4g17486 isoform X2 [Cucurbita pepo subsp. pepo]

6.1e-36

95.06

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Query:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDRL
        GSVCNCILPDSLRISAVRHDPT+PPYETERTKLRN SSCLSTISSQQ+QLSSSSLFLRSPSKGWELKKPNGDPPHASKDR+
Subjt:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LP93 PPPDE domain-containing protein

2.6e-24

78.21

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Query:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASK
        GSVCNCILP+SLRISAVRHDPT  P+ETE+TKLRNA SCLS+ISS+Q+QLSSSSL+L+SPSKGWELKKPN +P    K
Subjt:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASK

A0A6J1GGC0 deSI-like protein At4g17486 isoform X1

1.3e-36

100

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Query:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKD
        GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKD
Subjt:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKD

A0A6J1GGE7 deSI-like protein At4g17486 isoform X2

3.5e-37

100

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Query:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDR
        GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDR
Subjt:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDR

A0A6J1KJZ2 deSI-like protein At4g17486 isoform X2

1.0e-36

96.3

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Query:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDRL
        GSVCNCILPDSLRISAVRHDPT+PPYETERTKLRNASSCLSTISSQQ+QLSSSSLFLRSPSKGWELKKPNGDPPHASKDR+
Subjt:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDRL

A0A6J1KMG7 deSI-like protein At4g17486 isoform X1

6.6e-36

97.47

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Query:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKD
        GSVCNCILPDSLRISAVRHDPT+PPYETERTKLRNASSCLSTISSQQ+QLSSSSLFLRSPSKGWELKKPNGDPPHASKD
Subjt:  GSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G47740.1 PPPDE putative thiol peptidase family protein

3.7e-15

56.76

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Query:  GSVCNCILPDSLRISAVRHDP--TFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKG----WELKK
        GSVC+CILP+SL+I+AV HDP    P  E E+  LR++ SCLS+IS +Q+QLS+SSLFL+SP +G    W+LK+
Subjt:  GSVCNCILPDSLRISAVRHDP--TFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKG----WELKK

AT1G47740.2 PPPDE putative thiol peptidase family protein

3.7e-15

56.76

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Query:  GSVCNCILPDSLRISAVRHDP--TFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKG----WELKK
        GSVC+CILP+SL+I+AV HDP    P  E E+  LR++ SCLS+IS +Q+QLS+SSLFL+SP +G    W+LK+
Subjt:  GSVCNCILPDSLRISAVRHDP--TFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKG----WELKK

Sequences

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CDS sequence

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ATGAACCTTACAGGTTCCGTTTGTAATTGCATACTTCCCGACTCCCTTAGAATATCTGCCGTAAGACACGATCCCACTTTCCCACCATATGAGACCGAGAGGACGAAGCT
GAGGAATGCTTCCAGTTGCTTGTCTACTATATCAAGTCAGCAGAGGCAGCTGTCTTCATCTTCATTATTTCTACGGTCGCCATCGAAAGGCTGGGAATTGAAGAAGCCGA
ACGGCGATCCCCCTCATGCCTCAAAGGATAGGTTGGTGAGTATATTATGGTGGCAAATCTCTAATCGTGATTTAAAGTTTACGATTCACGAGGGGTCGGGATTAGAATAT
CTGACCTTTTTAGATATCTTTACAAAGATTTCTTACCTTTTCGGTAGATCTTTACGACTCACAAATTCATCTGGGACCTCACAACTCACAGGCATCCCAAGGCCAATGGG
AGAATCCAATGCGAATTCTTTTAGTTTGAATTTCCATCCACCAATAGTATCTGTCATATATAGTATTCAAAAAGAACAAAAAAAAATGAGTATGATAAGAGGAAGTGGGC
ATGAGATCTTGATAAGGAATCCTCAGCAAAATTGTAAGTCCTAA

mRNA sequence

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Protein sequence

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MNLTGSVCNCILPDSLRISAVRHDPTFPPYETERTKLRNASSCLSTISSQQRQLSSSSLFLRSPSKGWELKKPNGDPPHASKDRLVSILWWQISNRDLKFTIHEGSGLEY
LTFLDIFTKISYLFGRSLRLTNSSGTSQLTGIPRPMGESNANSFSLNFHPPIVSVIYSIQKEQKKMSMIRGSGHEILIRNPQQNCKS

CmoCh12G004310 (gene) of Cucurbita moschata (Rifu) v1 genome