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CmoCh12G004800 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G004800
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptioncalcium-binding protein H-like isoform X1
Genome locationCmo_Chr12:2943808..2944119
RNA-Seq ExpressionCmoCh12G004800
SyntenyCmoCh12G004800
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022951742.1 probable calcium-binding protein CML11 [Cucurbita moschata]3.5e-3176.7Show/hide
Query:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL
        MS+SILQAWAEN+ANELIKKYD+NGDGVLTKEE QV LRD               IPRTNDKGAHKLNSNPRTNPKIQVQ KATKS  KVLS+KVSNVPL
Subjt:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL

Query:  SRE
        SRE
Subjt:  SRE

XP_022951798.1 probable calcium-binding protein CML11 [Cucurbita moschata]6.1e-2871.84Show/hide
Query:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL
        MS+SILQAWAENEANEL+KKYDRNGDGVLTKEE QV LRD               IP+TNDKGAH+L+SN  TNPKIQVQ  ATKS  KVLS+KVSNVPL
Subjt:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL

Query:  SRE
        SRE
Subjt:  SRE

XP_023002691.1 probable calcium-binding protein CML11 [Cucurbita maxima]1.4e-2769.9Show/hide
Query:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL
        MS+SILQ WAENEANEL+KKYD+NGDG+LTKEE QV LRD               IP+TNDKGAHKL+SN  TNPKIQVQDK TKS  KVLS+KVSNV L
Subjt:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL

Query:  SRE
        SRE
Subjt:  SRE

XP_023538396.1 probable calcium-binding protein CML11 isoform X1 [Cucurbita pepo subsp. pepo]5.2e-2769.9Show/hide
Query:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL
        MS+SILQAWAENEANEL+KKYDRNGDGVLTKEE Q  LRD               IP+TNDKGAHKL+SN  TNPKIQVQ KAT S  KV  +KVSNVPL
Subjt:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL

Query:  SRE
        SRE
Subjt:  SRE

XP_023538397.1 probable calcium-binding protein CML11 isoform X2 [Cucurbita pepo subsp. pepo]5.2e-2769.9Show/hide
Query:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL
        MS+SILQAWAENEANEL+KKYDRNGDGVLTKEE Q  LRD               IP+TNDKGAHKL+SN  TNPKIQVQ KAT S  KV  +KVSNVPL
Subjt:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL

Query:  SRE
        SRE
Subjt:  SRE

TrEMBL top hitse value%identityAlignment
A0A6J1GII5 probable calcium-binding protein CML111.7e-3176.7Show/hide
Query:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL
        MS+SILQAWAEN+ANELIKKYD+NGDGVLTKEE QV LRD               IPRTNDKGAHKLNSNPRTNPKIQVQ KATKS  KVLS+KVSNVPL
Subjt:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL

Query:  SRE
        SRE
Subjt:  SRE

A0A6J1GIQ8 probable calcium-binding protein CML113.0e-2871.84Show/hide
Query:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL
        MS+SILQAWAENEANEL+KKYDRNGDGVLTKEE QV LRD               IP+TNDKGAH+L+SN  TNPKIQVQ  ATKS  KVLS+KVSNVPL
Subjt:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL

Query:  SRE
        SRE
Subjt:  SRE

A0A6J1GJT8 probable calcium-binding protein CML111.1e-2568.32Show/hide
Query:  ISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPLSR
        +SIL+AWAENEANEL+KKYDRNGDGVLTKEE QV LRD               IP+TNDKGAH+L+SN  TN KIQVQ K TKS  KVLS+K+SNVPLSR
Subjt:  ISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPLSR

Query:  E
        E
Subjt:  E

A0A6J1KK48 probable calcium-binding protein CML142.1e-2669.9Show/hide
Query:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL
        MS+SILQAWAENEANEL+KKYDRNGDGVLTKEE QV  RD               IP+TNDKGA+KL+SN  TNPKIQVQDKATKS  K  S+KVSNV L
Subjt:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL

Query:  SRE
        SRE
Subjt:  SRE

A0A6J1KM01 probable calcium-binding protein CML116.6e-2869.9Show/hide
Query:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL
        MS+SILQ WAENEANEL+KKYD+NGDG+LTKEE QV LRD               IP+TNDKGAHKL+SN  TNPKIQVQDK TKS  KVLS+KVSNV L
Subjt:  MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRD---------------IPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPL

Query:  SRE
        SRE
Subjt:  SRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATCTCCATACTCCAAGCTTGGGCCGAGAATGAAGCAAATGAATTAATCAAGAAGTATGACAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCAACAAGTCTC
TCTCCGTGATATTCCAAGAACAAACGACAAGGGTGCACACAAGCTTAACTCAAATCCTCGTACAAACCCAAAAATACAAGTACAAGACAAAGCTACAAAATCCTTGATAA
AAGTTCTTAGTAAAAAGGTATCTAATGTGCCACTCAGTAGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTATCTCCATACTCCAAGCTTGGGCCGAGAATGAAGCAAATGAATTAATCAAGAAGTATGACAGAAATGGTGATGGTGTTCTCACTAAAGAAGAGCAACAAGTCTC
TCTCCGTGATATTCCAAGAACAAACGACAAGGGTGCACACAAGCTTAACTCAAATCCTCGTACAAACCCAAAAATACAAGTACAAGACAAAGCTACAAAATCCTTGATAA
AAGTTCTTAGTAAAAAGGTATCTAATGTGCCACTCAGTAGAGAGTAG
Protein sequenceShow/hide protein sequence
MSISILQAWAENEANELIKKYDRNGDGVLTKEEQQVSLRDIPRTNDKGAHKLNSNPRTNPKIQVQDKATKSLIKVLSKKVSNVPLSRE