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CmoCh12G004850 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G004850
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionEF hand calcium-binding protein family
Genome locationCmo_Chr12:2983094..2983354
RNA-Seq ExpressionCmoCh12G004850
SyntenyCmoCh12G004850
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060892.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa]4.4e-3177.65Show/hide
Query:  MSYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR
        MS  +SKL+LS+ +IKEIFREHDIDGDG+LS+SE+VKAFGF G+ILPFYKAHYG+AHAD +GDG+I+E+ELDKLV+YAEKFQHKR
Subjt:  MSYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR

KGN62516.1 hypothetical protein Csa_022521 [Cucumis sativus]5.4e-2972.94Show/hide
Query:  MSYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR
        MS  +++L+LS+ +IKEIFREHDIDGDG+LS++E+VKAFG  G+ILPFYKAHYG+AHAD +GDGFI+E+ELDKLV+YA+KFQHKR
Subjt:  MSYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR

KGN62525.1 hypothetical protein Csa_022453 [Cucumis sativus]2.1e-2569.51Show/hide
Query:  GSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR
        G SK   S+ E+KEIFREHDIDGDG LSISEL+KA GFLG+ +PFYKAHYG+A+ D +GDG I EDELDKL++YAE+FQ +R
Subjt:  GSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR

XP_004152805.1 probable calcium-binding protein CML10 [Cucumis sativus]2.1e-2875.31Show/hide
Query:  SSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR
        S++L+LS+ +IKEIFREHDIDGDG+LS++E+VKAFG  G+ILPFYKAHYG+AHAD +GDGFI+E+ELDKLV+YA+KFQHKR
Subjt:  SSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR

XP_023002888.1 calmodulin-like [Cucurbita maxima]2.0e-2367.5Show/hide
Query:  SKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR
        + +KLS+ +IKEIF EHDIDGDG LS+SEL KAF F G+I+P YKAHYGLA+ADADGDG I E+EL+KLV+YAE+   K+
Subjt:  SKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR

TrEMBL top hitse value%identityAlignment
A0A0A0LKX1 Uncharacterized protein1.0e-2569.51Show/hide
Query:  GSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR
        G SK   S+ E+KEIFREHDIDGDG LSISEL+KA GFLG+ +PFYKAHYG+A+ D +GDG I EDELDKL++YAE+FQ +R
Subjt:  GSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR

A0A0A0LRC1 Uncharacterized protein2.6e-2972.94Show/hide
Query:  MSYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR
        MS  +++L+LS+ +IKEIFREHDIDGDG+LS++E+VKAFG  G+ILPFYKAHYG+AHAD +GDGFI+E+ELDKLV+YA+KFQHKR
Subjt:  MSYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR

A0A5A7UYC0 Putative calcium-binding protein CML102.1e-3177.65Show/hide
Query:  MSYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR
        MS  +SKL+LS+ +IKEIFREHDIDGDG+LS+SE+VKAFGF G+ILPFYKAHYG+AHAD +GDG+I+E+ELDKLV+YAEKFQHKR
Subjt:  MSYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR

A0A5A7V2Z9 Putative calcium-binding protein CML109.7e-2467.95Show/hide
Query:  YGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEK
        +G SK   S+ E+KEIFREHDIDGDG LSI EL+KA GFLG+ +PFYKAHYG+A++D +GDG I EDELDKL++YAE+
Subjt:  YGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEK

A0A6J1KUW2 calmodulin-like9.7e-2467.5Show/hide
Query:  SKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR
        + +KLS+ +IKEIF EHDIDGDG LS+SEL KAF F G+I+P YKAHYGLA+ADADGDG I E+EL+KLV+YAE+   K+
Subjt:  SKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKR

SwissProt top hitse value%identityAlignment
P94092 Polcalcin Cyn d 76.3e-0440.35Show/hide
Query:  EIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDE
        +++ IF+  D +GDG++S++EL  A   LG+     +    +A  D DGDGFID DE
Subjt:  EIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDE

Q5ZCK5 Probable calcium-binding protein CML164.8e-0431.25Show/hide
Query:  KCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLV
        + E++  F  +D+DGDG+++ +EL K  G +G      +    +A  D DGDG +  +E  K++
Subjt:  KCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLV

Q8RYJ9 Putative calcium-binding protein CML235.7e-0542.03Show/hide
Query:  EIKEIFREHDIDGDGQLSISEL---VKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAE
        E + +F   D DGDG++S +EL   VKA   LG  +P  +    +A AD DGDG +DE+E  +LV   E
Subjt:  EIKEIFREHDIDGDGQLSISEL---VKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAE

Q8RZB5 Probable calcium-binding protein CML103.9e-0641.1Show/hide
Query:  SYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKL
        S G S     + E++ +FR+ D +GDG++S SEL   F  LG+     +    +A ADADGDGFI  DE   L
Subjt:  SYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKL

Q9FIH9 Calcium-binding protein CML375.7e-0537.33Show/hide
Query:  SYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVE
        S GSS L ++  E++ +F   D + DG++S  EL      LG  L   +    +  +D DGDGFID +E  KL+E
Subjt:  SYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVE

Arabidopsis top hitse value%identityAlignment
AT1G18530.1 EF hand calcium-binding protein family9.9e-0539.66Show/hide
Query:  EIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDEL
        ++K+IF   D+D DG L+I EL      LG      + H  LA  D++G+GF++ DEL
Subjt:  EIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDEL

AT1G24620.1 EF hand calcium-binding protein family7.6e-0532.39Show/hide
Query:  KLKLSKCEIKE---IFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKL
        K +  K EI+E   +F++ D++GDG++S  EL      LG+ +P  +    +   D  GDG+I+ +E  +L
Subjt:  KLKLSKCEIKE---IFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKL

AT1G73630.1 EF hand calcium-binding protein family5.8e-0536.84Show/hide
Query:  EIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDE
        E+K++F + D +GDG++S+SEL   F  +G      + +  L   D D DGFI+++E
Subjt:  EIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDE

AT3G50770.1 calmodulin-like 411.3e-0437.04Show/hide
Query:  SKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDG
        SK E++++F   D DGDG++S  EL   FG +G  +    A   +   D D DG
Subjt:  SKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDG

AT5G42380.1 calmodulin like 374.0e-0637.33Show/hide
Query:  SYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVE
        S GSS L ++  E++ +F   D + DG++S  EL      LG  L   +    +  +D DGDGFID +E  KL+E
Subjt:  SYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTATGGATCAAGCAAGCTAAAGCTCTCCAAATGCGAGATCAAAGAGATCTTTAGAGAGCACGATATCGATGGAGATGGTCAATTGAGCATCAGCGAGCTAGTAAA
GGCCTTCGGGTTCCTAGGCAATATCCTTCCCTTCTATAAAGCTCACTATGGATTGGCTCATGCCGATGCGGATGGCGATGGCTTCATCGATGAGGATGAACTCGACAAGC
TCGTTGAATATGCCGAGAAGTTTCAGCATAAGAGGCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTATGGATCAAGCAAGCTAAAGCTCTCCAAATGCGAGATCAAAGAGATCTTTAGAGAGCACGATATCGATGGAGATGGTCAATTGAGCATCAGCGAGCTAGTAAA
GGCCTTCGGGTTCCTAGGCAATATCCTTCCCTTCTATAAAGCTCACTATGGATTGGCTCATGCCGATGCGGATGGCGATGGCTTCATCGATGAGGATGAACTCGACAAGC
TCGTTGAATATGCCGAGAAGTTTCAGCATAAGAGGCACTGA
Protein sequenceShow/hide protein sequence
MSYGSSKLKLSKCEIKEIFREHDIDGDGQLSISELVKAFGFLGNILPFYKAHYGLAHADADGDGFIDEDELDKLVEYAEKFQHKRH