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CmoCh12G004870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G004870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCalcium-binding EF-hand family protein, putative
Genome locationCmo_Chr12:2997928..2998200
RNA-Seq ExpressionCmoCh12G004870
SyntenyCmoCh12G004870
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060893.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa]2.6e-2668.6Show/hide
Query:  YGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII
        Y KK S   L +EE+K IF+EHDFNGDGRLSI+ELSRAFG  GAF PLYRA  G+ +AD +GDG+I+E EL+KVVDYAIKCKYN++
Subjt:  YGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII

KAG6585659.1 hypothetical protein SDJN03_18392, partial [Cucurbita argyrosperma subsp. sororia]1.2e-42100Show/hide
Query:  MASKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII
        MASKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII
Subjt:  MASKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII

KAG6585660.1 Calmodulin-like protein 5, partial [Cucurbita argyrosperma subsp. sororia]2.7e-3182.56Show/hide
Query:  YGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII
        YGKK S+S L REEIKAIF+EHD NGDGRLSIQELSRAFGM GAFLPLYRA R +  AD NGDG+ITE ELDKVVDYAIKCKYNII
Subjt:  YGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII

KGN62515.1 hypothetical protein Csa_022644 [Cucumis sativus]2.0e-2668.6Show/hide
Query:  YGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII
        Y KK S   L +EE+K +F+EHDFNGDGRLSI+ELSRAFG  GAF PLYRA  G+ +AD +GDG+I+E ELDKVVDYAIKCKYN++
Subjt:  YGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII

XP_022144349.1 calmodulin-like protein 5 [Momordica charantia]1.7e-2570Show/hide
Query:  MASKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII
        M  K  KK  S  L REE+KAIF+ HD NGDG LSI+ELSRAFG LGA LPLYRAV GIL AD +GDG IT+ EL+KVVDYA+KCKY+II
Subjt:  MASKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII

TrEMBL top hitse value%identityAlignment
A0A0A0LKW4 Uncharacterized protein9.8e-2768.6Show/hide
Query:  YGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII
        Y KK S   L +EE+K +F+EHDFNGDGRLSI+ELSRAFG  GAF PLYRA  G+ +AD +GDG+I+E ELDKVVDYAIKCKYN++
Subjt:  YGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII

A0A0A0LRC1 Uncharacterized protein5.9e-1658.11Show/hide
Query:  LPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKY
        L RE+IK IF+EHD +GDGRLS+ E+ +AFG  G+ LP Y+A  G+  AD NGDG+I E ELDK+VDYA K ++
Subjt:  LPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKY

A0A5A7UY46 Putative calcium-binding protein CML101.3e-2668.6Show/hide
Query:  YGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII
        Y KK S   L +EE+K IF+EHDFNGDGRLSI+ELSRAFG  GAF PLYRA  G+ +AD +GDG+I+E EL+KVVDYAIKCKYN++
Subjt:  YGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII

A0A5A7UYC0 Putative calcium-binding protein CML107.0e-1757.69Show/hide
Query:  SSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKY
        S   L RE+IK IF+EHD +GDGRLS+ E+ +AFG  G+ LP Y+A  G+  AD NGDGYI E ELDK+VDYA K ++
Subjt:  SSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKY

A0A6J1CS20 calmodulin-like protein 58.3e-2670Show/hide
Query:  MASKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII
        M  K  KK  S  L REE+KAIF+ HD NGDG LSI+ELSRAFG LGA LPLYRAV GIL AD +GDG IT+ EL+KVVDYA+KCKY+II
Subjt:  MASKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII

SwissProt top hitse value%identityAlignment
Q8RZB5 Probable calcium-binding protein CML107.7e-0538.46Show/hide
Query:  SSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHE
        S +  P EE++ +F++ D NGDGR+S  EL   F  LG         R +  AD +GDG+I+  E
Subjt:  SSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHE

Q9FYK2 Probable calcium-binding protein CML254.5e-0537.5Show/hide
Query:  SKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHE
        S Y +K  S      E++A+FK+ D NGDG++S +EL      LG  +P     + I   D  GDGYI   E
Subjt:  SKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHE

Q9LX27 Calmodulin-like protein 42.9e-0434.43Show/hide
Query:  EIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKV
        ++K +F+  D NGDGR++ +EL+ +   LG F+P    ++ I   D NGDG +  +E + +
Subjt:  EIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKV

Q9SRE6 Calcium-binding protein CML381.3e-0435.48Show/hide
Query:  EIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVV
        E++A+F   D N DGR+S +EL ++F  LG  L    AV  + ++D +GDG +   E  +++
Subjt:  EIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVV

Q9SRR7 Calmodulin-like protein 31.3e-0437.7Show/hide
Query:  LPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHE
        + + E+  IF+  D NGDG+++ QEL+ +   LG ++P    V+ I   D+NGDGY+   E
Subjt:  LPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHE

Arabidopsis top hitse value%identityAlignment
AT1G24620.1 EF hand calcium-binding protein family3.2e-0637.5Show/hide
Query:  SKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHE
        S Y +K  S      E++A+FK+ D NGDG++S +EL      LG  +P     + I   D  GDGYI   E
Subjt:  SKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHE

AT1G76650.1 calmodulin-like 389.4e-0635.48Show/hide
Query:  EIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVV
        E++A+F   D N DGR+S +EL ++F  LG  L    AV  + ++D +GDG +   E  +++
Subjt:  EIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVV

AT1G76650.3 calmodulin-like 389.4e-0635.48Show/hide
Query:  EIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVV
        E++A+F   D N DGR+S +EL ++F  LG  L    AV  + ++D +GDG +   E  +++
Subjt:  EIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVV

AT3G07490.1 ARF-GAP domain 119.4e-0637.7Show/hide
Query:  LPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHE
        + + E+  IF+  D NGDG+++ QEL+ +   LG ++P    V+ I   D+NGDGY+   E
Subjt:  LPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHE

AT3G59440.1 Calcium-binding EF-hand family protein2.1e-0534.43Show/hide
Query:  EIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKV
        ++K +F+  D NGDGR++ +EL+ +   LG F+P    ++ I   D NGDG +  +E + +
Subjt:  EIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAGTAAATATGGCAAGAAGAACTCAAGCTCCATGTTGCCAAGAGAGGAGATAAAAGCAATATTTAAGGAACATGATTTCAATGGCGATGGCCGATTGAGCATCCA
AGAATTGTCGAGAGCGTTCGGAATGCTGGGCGCATTTTTACCTCTCTACCGTGCAGTCCGTGGCATCCTCATTGCTGATGTCAATGGAGATGGATATATCACCGAGCATG
AACTGGATAAGGTCGTGGATTATGCTATAAAATGTAAGTATAACATAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAGTAAATATGGCAAGAAGAACTCAAGCTCCATGTTGCCAAGAGAGGAGATAAAAGCAATATTTAAGGAACATGATTTCAATGGCGATGGCCGATTGAGCATCCA
AGAATTGTCGAGAGCGTTCGGAATGCTGGGCGCATTTTTACCTCTCTACCGTGCAGTCCGTGGCATCCTCATTGCTGATGTCAATGGAGATGGATATATCACCGAGCATG
AACTGGATAAGGTCGTGGATTATGCTATAAAATGTAAGTATAACATAATCTAA
Protein sequenceShow/hide protein sequence
MASKYGKKNSSSMLPREEIKAIFKEHDFNGDGRLSIQELSRAFGMLGAFLPLYRAVRGILIADVNGDGYITEHELDKVVDYAIKCKYNII