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CmoCh12G004880 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G004880
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCalcium-binding EF-hand family protein
Genome locationCmo_Chr12:3002302..3002577
RNA-Seq ExpressionCmoCh12G004880
SyntenyCmoCh12G004880
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060893.1 putative calcium-binding protein CML10 [Cucumis melo var. makuwa]4.9e-2873.56Show/hide
Query:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII
        LY KKKS  +L++EE+K IFREHD NGDGRLSI+ELSRAFG FGAF PLYRAA  +  AD +GDGFI+EQEL+KVVDYAIKCKYN++
Subjt:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII

KAG6585659.1 hypothetical protein SDJN03_18392, partial [Cucurbita argyrosperma subsp. sororia]2.7e-3182.56Show/hide
Query:  YGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII
        YGKK S+S L REEIKAIF+EHD NGDGRLSIQELSRAFGM GAFLPLYRA R +  AD NGDG+ITE ELDKVVDYAIKCKYNII
Subjt:  YGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII

KAG6585660.1 Calmodulin-like protein 5, partial [Cucurbita argyrosperma subsp. sororia]1.8e-43100Show/hide
Query:  MACILYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII
        MACILYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII
Subjt:  MACILYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII

KGN62515.1 hypothetical protein Csa_022644 [Cucumis sativus]2.8e-2873.56Show/hide
Query:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII
        LY KKKS  +L++EE+K +FREHD NGDGRLSI+ELSRAFG FGAF PLYRAA  +  AD +GDGFI+EQELDKVVDYAIKCKYN++
Subjt:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII

XP_004152805.1 probable calcium-binding protein CML10 [Cucumis sativus]1.1e-2474.07Show/hide
Query:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIK
        LY KKKS  +L++EE+K +FREHD NGDGRLSI+ELSRAFG FGAF PLYRAA  +  AD +GDGFI+EQELDKVVDYAIK
Subjt:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIK

TrEMBL top hitse value%identityAlignment
A0A0A0LKW4 Uncharacterized protein1.4e-2873.56Show/hide
Query:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII
        LY KKKS  +L++EE+K +FREHD NGDGRLSI+ELSRAFG FGAF PLYRAA  +  AD +GDGFI+EQELDKVVDYAIKCKYN++
Subjt:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII

A0A0A0LRC1 Uncharacterized protein6.4e-1861.33Show/hide
Query:  RLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKY
        +L RE+IK IFREHD++GDGRLS+ E+ +AFG FG+ LP Y+A   M  AD NGDGFI E+ELDK+VDYA K ++
Subjt:  RLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKY

A0A5A7UY46 Putative calcium-binding protein CML102.4e-2873.56Show/hide
Query:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII
        LY KKKS  +L++EE+K IFREHD NGDGRLSI+ELSRAFG FGAF PLYRAA  +  AD +GDGFI+EQEL+KVVDYAIKCKYN++
Subjt:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII

A0A5A7UYC0 Putative calcium-binding protein CML104.9e-1858.97Show/hide
Query:  STSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKY
        S  +L RE+IK IFREHD++GDGRLS+ E+ +AFG FG+ LP Y+A   M  AD NGDG+I E+ELDK+VDYA K ++
Subjt:  STSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKY

A0A6J1CS20 calmodulin-like protein 59.2e-2569.05Show/hide
Query:  KKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII
        KKK + +L REE+KAIFR HD+NGDG LSI+ELSRAFG  GA LPLYRA   +  ADA+GDG IT++EL+KVVDYA+KCKY+II
Subjt:  KKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII

SwissProt top hitse value%identityAlignment
O22845 Calmodulin-like protein 56.4e-0732.05Show/hide
Query:  TSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYN
        T R+   E+K +F+  D NGDGR++ +EL+ +    G ++P     + +HK DANGDG +   E + +    +   +N
Subjt:  TSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYN

Q2QVI1 Probable calcium-binding protein CML281.4e-0642.11Show/hide
Query:  EIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE
        E++ +F+  D NGDGR++ +EL  +F  FG F+P      +M K DANGDG +  +E
Subjt:  EIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE

Q6L4D4 Probable calcium-binding protein CML152.7e-0541.82Show/hide
Query:  EEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFIT
        +E + +FR+ D NGDGR+S  EL+  F   G  +     AR M +AD++GDG+I+
Subjt:  EEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFIT

Q8RZB5 Probable calcium-binding protein CML102.4e-0646.55Show/hide
Query:  EEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE
        EE++ +FR+ D NGDGR+S  EL   F   G        AR M +ADA+GDGFI+  E
Subjt:  EEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE

Q9FYK2 Probable calcium-binding protein CML256.0e-0531.43Show/hide
Query:  YGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE
        Y +K  + +    E++A+F++ DVNGDG++S +EL       G  +P     +++ + D  GDG+I  +E
Subjt:  YGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE

Arabidopsis top hitse value%identityAlignment
AT1G24620.1 EF hand calcium-binding protein family4.3e-0631.43Show/hide
Query:  YGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE
        Y +K  + +    E++A+F++ DVNGDG++S +EL       G  +P     +++ + D  GDG+I  +E
Subjt:  YGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE

AT1G73630.1 EF hand calcium-binding protein family7.3e-0633.8Show/hide
Query:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE
        L    KST+     E+K +F + D NGDG++S+ EL   F   G         R + + D + DGFI ++E
Subjt:  LYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE

AT2G43290.1 Calcium-binding EF-hand family protein4.6e-0832.05Show/hide
Query:  TSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYN
        T R+   E+K +F+  D NGDGR++ +EL+ +    G ++P     + +HK DANGDG +   E + +    +   +N
Subjt:  TSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYN

AT3G07490.1 ARF-GAP domain 113.6e-0535.09Show/hide
Query:  EIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE
        E+  IF+  D NGDG+++ QEL+ +    G ++P     + + K D NGDG++  +E
Subjt:  EIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQE

AT3G59440.1 Calcium-binding EF-hand family protein7.3e-0634.43Show/hide
Query:  EIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKV
        ++K +F+  D NGDGR++ +EL+ +    G F+P     + + K DANGDG +   E + +
Subjt:  EIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGCATATTATATGGCAAGAAGAAATCAACCTCGAGGTTGCGAAGAGAGGAGATAAAAGCAATATTTAGGGAACATGATGTCAATGGCGATGGCCGATTGAGCAT
CCAAGAATTGTCGAGAGCGTTCGGAATGTTCGGCGCATTTTTACCTCTCTACCGTGCAGCCCGCAGCATGCACAAGGCTGATGCCAATGGAGATGGATTTATCACTGAGC
AAGAACTGGATAAGGTCGTGGATTATGCTATAAAATGTAAATATAACATAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGCATATTATATGGCAAGAAGAAATCAACCTCGAGGTTGCGAAGAGAGGAGATAAAAGCAATATTTAGGGAACATGATGTCAATGGCGATGGCCGATTGAGCAT
CCAAGAATTGTCGAGAGCGTTCGGAATGTTCGGCGCATTTTTACCTCTCTACCGTGCAGCCCGCAGCATGCACAAGGCTGATGCCAATGGAGATGGATTTATCACTGAGC
AAGAACTGGATAAGGTCGTGGATTATGCTATAAAATGTAAATATAACATAATCTAA
Protein sequenceShow/hide protein sequence
MACILYGKKKSTSRLRREEIKAIFREHDVNGDGRLSIQELSRAFGMFGAFLPLYRAARSMHKADANGDGFITEQELDKVVDYAIKCKYNII