; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G004950 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G004950
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationCmo_Chr12:3032893..3034946
RNA-Seq ExpressionCmoCh12G004950
SyntenyCmoCh12G004950
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004150882.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]5.4e-12083.9Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFA
        MAVS SAAT+ HL PSSS Y+   +P Q L LRSPSRRT+   A +QS+ RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFA
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFA

Query:  MLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPL
        MLGVSG+LLTDLLRVTGISELPVWYNAGAVEYGFANK TLFIVQLLLMG          FVETKRYMDFKSPGSQAQEGTFFGLE+AF+GLEPGYPGGPL
Subjt:  MLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPL

Query:  LNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        LNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLVEHLSNPWH T+I TLSS
Subjt:  LNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

XP_022951251.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moschata]2.1e-14096.24Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM
        MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM

Query:  LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL
        LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMG          FVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL
Subjt:  LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL

Query:  NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
Subjt:  NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

XP_023001834.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima]1.3e-13794.36Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM
        MAVSLSAAT FHLLPSSS YSSSLS KQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM

Query:  LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL
        LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMG          FVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL
Subjt:  LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL

Query:  NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        NPLGLAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNT+IHTLSS
Subjt:  NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

XP_023536986.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic-like [Cucurbita pepo subsp. pepo]1.3e-13794.4Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQA--QSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF
        MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTV AQA  QSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQA--QSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF

Query:  AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP
        AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMG          FVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP
Subjt:  AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP

Query:  LLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        LLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNT+IHTLSS
Subjt:  LLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

XP_038886221.1 photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida]3.8e-12184.62Show/hide
Query:  MAVSLSA----ATSFHLLP--SSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAEL
        MAVS+SA    AT+FHL P  SSS Y+ S +P Q L LRSPSRRT+   AQ+QS+ RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKW+VQAEL
Subjt:  MAVSLSA----ATSFHLLP--SSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAEL

Query:  VHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPG
        VHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMG          FVETKRYMDFKSPGSQAQEGTFFGLE+AFEGLEPG
Subjt:  VHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPG

Query:  YPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        YPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLVEHLSNPWH T+I TLSS
Subjt:  YPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

TrEMBL top hitse value%identityAlignment
A0A0A0LRB4 Chlorophyll a-b binding protein, chloroplastic2.6e-12083.9Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFA
        MAVS SAAT+ HL PSSS Y+   +P Q L LRSPSRRT+   A +QS+ RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDP SLKW+VQAELVH RFA
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHL-LRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFA

Query:  MLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPL
        MLGVSG+LLTDLLRVTGISELPVWYNAGAVEYGFANK TLFIVQLLLMG          FVETKRYMDFKSPGSQAQEGTFFGLE+AF+GLEPGYPGGPL
Subjt:  MLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPL

Query:  LNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        LNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLVEHLSNPWH T+I TLSS
Subjt:  LNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

A0A1S3BBL1 Chlorophyll a-b binding protein, chloroplastic1.0e-11680.97Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHL--LRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF
        MAVS+SAAT FHL PSSS ++   +P      LRSPSR ++   A +QS+ RQTWLPGLDPPP+LDGTL GDFGFDPLGLGEDP SLKW+VQAELVH RF
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHL--LRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF

Query:  AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP
        AMLGV+G+LLTDLLRVTGISELPVWYNAGAVEYGFANK TLFIVQLLLMG          FVETKRYMDFKSPGSQAQEGTFFGLE+AFEGLEPGYPGGP
Subjt:  AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP

Query:  LLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        LLNPLG+AKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLVEHLSNPWH T+I TLSS
Subjt:  LLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

A0A5A7UY53 Chlorophyll a-b binding protein, chloroplastic1.0e-11680.97Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHL--LRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF
        MAVS+SAAT FHL PSSS ++   +P      LRSPSR ++   A +QS+ RQTWLPGLDPPP+LDGTL GDFGFDPLGLGEDP SLKW+VQAELVH RF
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHL--LRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF

Query:  AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP
        AMLGV+G+LLTDLLRVTGISELPVWYNAGAVEYGFANK TLFIVQLLLMG          FVETKRYMDFKSPGSQAQEGTFFGLE+AFEGLEPGYPGGP
Subjt:  AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP

Query:  LLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        LLNPLG+AKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPIDNLVEHLSNPWH T+I TLSS
Subjt:  LLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

A0A6J1GH16 Chlorophyll a-b binding protein, chloroplastic1.0e-14096.24Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM
        MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM

Query:  LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL
        LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMG          FVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL
Subjt:  LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL

Query:  NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
Subjt:  NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

A0A6J1KNS0 Chlorophyll a-b binding protein, chloroplastic6.2e-13894.36Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM
        MAVSLSAAT FHLLPSSS YSSSLS KQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAM

Query:  LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL
        LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMG          FVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL
Subjt:  LGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLL

Query:  NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        NPLGLAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNT+IHTLSS
Subjt:  NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

SwissProt top hitse value%identityAlignment
P13869 Chlorophyll a-b binding protein, chloroplastic6.4e-4744.35Show/hide
Query:  RTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANK
        R+V   A +    R  W PG  PP  LDG+L GDFGFDPLGLG DP SLKW  QAELVHSR+AMLG +GI + + L   G+   P WY AG  EY F + 
Subjt:  RTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANK

Query:  ETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFV
         TLF+++L+L+G          + E +R+ D   PG    +  F    +   G + GYPGG   +PLG          + + KEIKNGRLAM+A++G + 
Subjt:  ETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFV

Query:  QAYVTQTGPIDNLVEHLSNPWHNTVIHTLS
        Q   T TGPIDNL  HL++P H T+    S
Subjt:  QAYVTQTGPIDNLVEHLSNPWHNTVIHTLS

P27521 Chlorophyll a-b binding protein 4, chloroplastic6.2e-5048.83Show/hide
Query:  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELL
        WLPGL  P +L G+LAGD GFDPLGL EDP +LKWFVQAELV+ R+AMLGV+G+LL ++    GI  +P WY+AG  +Y FA+  TLF+++ +L      
Subjt:  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELL

Query:  LICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHL
              +VE +R+ D K+PGS  Q+  F   + +    E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +NL++HL
Subjt:  LICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHL

Query:  SNPWHNTVIHTLS
        S+PWHNT++ T +
Subjt:  SNPWHNTVIHTLS

Q9C639 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic1.3e-9577.78Show/hide
Query:  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGF
        R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP SLKW+VQAELVHSRFAMLGV+GIL TDLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMG 
Subjt:  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGF

Query:  ELLLICNIMFVETKRYMDFKSPGSQAQEGT-FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL
                 F ETKRYMDF SPGSQA+EG+ FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA VT TGPIDNL
Subjt:  ELLLICNIMFVETKRYMDFKSPGSQAQEGT-FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL

Query:  VEHLSNPWHNTVIHTL
        VEHLSNPWH T+I TL
Subjt:  VEHLSNPWHNTVIHTL

Q9SQL2 Chlorophyll a-b binding protein P4, chloroplastic6.2e-5049.06Show/hide
Query:  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELL
        WLPGL  P +L G+L GD GFDPLGL EDP +L+WFVQAELV+ R+AMLGV+G+LL ++    GI  +P WY AG  EY FA+  TLF+++ +L      
Subjt:  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELL

Query:  LICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHL
              +VE +R+ D K+PGS  Q+  F   + +    E GYPGG + NPL  A  +    + K KEI NGRLAM+A LG  +Q  VT  GP DNL++H+
Subjt:  LICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHL

Query:  SNPWHNTVIHTL
        S+PWHNT++ TL
Subjt:  SNPWHNTVIHTL

Q9SYW8 Photosystem I chlorophyll a/b-binding protein 2, chloroplastic3.7e-4742.97Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSP--SRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF
        MA SL A+++   + S SF        +  L  P  SR   + +A +    R  W PG  PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VH R+
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSP--SRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF

Query:  AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP
        AMLG +GI + + L   GI   P WY AG  EY F +K TLF+V+L+L+G          + E +R+ D   PGS   +  F    +   G + GYPGG 
Subjt:  AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP

Query:  LLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTV
          +PLG          + + KEIKNGRLAM+A++G + Q   T TGPIDNL  HL++P H T+
Subjt:  LLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTV

Arabidopsis top hitse value%identityAlignment
AT1G19150.1 photosystem I light harvesting complex gene 61.4e-4140.66Show/hide
Query:  KQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNA
        ++ L+   + + V++  +     R  W PG  PP  LDG+L GDFGFDPLGLG DP +LKWF QAEL+HSR+AML V+GI++ + L   G  E   WY+A
Subjt:  KQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNA

Query:  GAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRL
        G+ EY FA+  TLF+ Q++LMG          + E +R+ D   PGS   E  +          + GYPGG   + +   +   +     + KEIKNGRL
Subjt:  GAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRL

Query:  AMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS
        AM+A LG   QA  T   PI+NL+ HL++P H  V    +S
Subjt:  AMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS

AT1G45474.1 photosystem I light harvesting complex gene 59.0e-9777.78Show/hide
Query:  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGF
        R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP SLKW+VQAELVHSRFAMLGV+GIL TDLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMG 
Subjt:  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGF

Query:  ELLLICNIMFVETKRYMDFKSPGSQAQEGT-FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL
                 F ETKRYMDF SPGSQA+EG+ FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA VT TGPIDNL
Subjt:  ELLLICNIMFVETKRYMDFKSPGSQAQEGT-FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL

Query:  VEHLSNPWHNTVIHTL
        VEHLSNPWH T+I TL
Subjt:  VEHLSNPWHNTVIHTL

AT1G45474.2 photosystem I light harvesting complex gene 59.0e-9777.78Show/hide
Query:  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGF
        R TWLPGL+PPP+LDG LAGD+GFDPLGLGEDP SLKW+VQAELVHSRFAMLGV+GIL TDLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMG 
Subjt:  RQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGF

Query:  ELLLICNIMFVETKRYMDFKSPGSQAQEGT-FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL
                 F ETKRYMDF SPGSQA+EG+ FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA VT TGPIDNL
Subjt:  ELLLICNIMFVETKRYMDFKSPGSQAQEGT-FFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNL

Query:  VEHLSNPWHNTVIHTL
        VEHLSNPWH T+I TL
Subjt:  VEHLSNPWHNTVIHTL

AT3G47470.1 light-harvesting chlorophyll-protein complex I subunit A44.4e-5148.83Show/hide
Query:  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELL
        WLPGL  P +L G+LAGD GFDPLGL EDP +LKWFVQAELV+ R+AMLGV+G+LL ++    GI  +P WY+AG  +Y FA+  TLF+++ +L      
Subjt:  WLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELL

Query:  LICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHL
              +VE +R+ D K+PGS  Q+  F   + +    E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  GP +NL++HL
Subjt:  LICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHL

Query:  SNPWHNTVIHTLS
        S+PWHNT++ T +
Subjt:  SNPWHNTVIHTLS

AT3G61470.1 photosystem I light harvesting complex gene 22.7e-4842.97Show/hide
Query:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSP--SRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF
        MA SL A+++   + S SF        +  L  P  SR   + +A +    R  W PG  PP  LDG+L GDFGFDPLGL  DP SLKW VQAE+VH R+
Subjt:  MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSP--SRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRF

Query:  AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP
        AMLG +GI + + L   GI   P WY AG  EY F +K TLF+V+L+L+G          + E +R+ D   PGS   +  F    +   G + GYPGG 
Subjt:  AMLGVSGILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGP

Query:  LLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTV
          +PLG          + + KEIKNGRLAM+A++G + Q   T TGPIDNL  HL++P H T+
Subjt:  LLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTTCACTTTCAGCCGCCACATCCTTCCATCTCCTGCCCTCTTCTTCATTTTACAGTTCCTCATTGAGCCCCAAACAACACCTCCTCCGATCACCCTCC
CGCCGCACCGTAACAGCTCAAGCTCAATCTCAATCTCAGCCTCGCCAAACATGGCTTCCCGGCCTCGACCCTCCACCGCATCTCGACGGAACCCTCGCCGGAGAT
TTTGGGTTCGACCCACTTGGGCTCGGCGAAGACCCACATAGCTTGAAGTGGTTCGTCCAAGCAGAGCTCGTTCATTCTCGCTTCGCCATGCTTGGCGTCTCTGGA
ATTCTCCTCACAGATCTGCTTCGTGTAACAGGAATCAGTGAATTGCCAGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAGGAAACTCTCTTC
ATTGTTCAGCTGCTGTTGATGGGGTTCGAACTCTTACTTATCTGTAACATCATGTTTGTGGAAACTAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCA
CAAGAAGGGACTTTCTTTGGATTAGAATCCGCTTTCGAAGGACTCGAGCCCGGATACCCAGGGGGTCCTCTGCTAAATCCTCTGGGTCTGGCTAAAGATATCAAG
AATGCACATGACTGGAAGCTCAAGGAGATTAAGAATGGACGGCTTGCAATGGTAGCCATGCTGGGGATCTTTGTGCAAGCTTATGTAACTCAAACAGGGCCAATA
GATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAACACTGTTATCCACACCCTCTCCAGCTAG
mRNA sequenceShow/hide mRNA sequence
AAGACAGGATAACACAACAAGAATAACAGCATCCTGTGATTCCTGGAAGAACATCTATCAATGGCGGTTTCACTTTCAGCCGCCACATCCTTCCATCTCCTGCCC
TCTTCTTCATTTTACAGTTCCTCATTGAGCCCCAAACAACACCTCCTCCGATCACCCTCCCGCCGCACCGTAACAGCTCAAGCTCAATCTCAATCTCAGCCTCGC
CAAACATGGCTTCCCGGCCTCGACCCTCCACCGCATCTCGACGGAACCCTCGCCGGAGATTTTGGGTTCGACCCACTTGGGCTCGGCGAAGACCCACATAGCTTG
AAGTGGTTCGTCCAAGCAGAGCTCGTTCATTCTCGCTTCGCCATGCTTGGCGTCTCTGGAATTCTCCTCACAGATCTGCTTCGTGTAACAGGAATCAGTGAATTG
CCAGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAGGAAACTCTCTTCATTGTTCAGCTGCTGTTGATGGGGTTCGAACTCTTACTTATCTGT
AACATCATGTTTGTGGAAACTAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGGACTTTCTTTGGATTAGAATCCGCTTTCGAAGGACTC
GAGCCCGGATACCCAGGGGGTCCTCTGCTAAATCCTCTGGGTCTGGCTAAAGATATCAAGAATGCACATGACTGGAAGCTCAAGGAGATTAAGAATGGACGGCTT
GCAATGGTAGCCATGCTGGGGATCTTTGTGCAAGCTTATGTAACTCAAACAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAACACTGTT
ATCCACACCCTCTCCAGCTAGCTCAAGTCCTTGAAGAACCAAAATATAAGCTATCTGGCTTTGGAGAGAATTTGTAAGCTAAATAGGGTACATATGAATGAACAA
ATGAATACTTCGTTTCACACCGTTGCCAAATTCAAACAAGATAGCAAATGAAAGAATTGAGGAAGGTTTCGTTGCTTGAATAGATAAATCCACGGATTCTCTTTC
GATACATATATATGTTGTAACGAGTGGAAACAAGATTAACTGCACTTACA
Protein sequenceShow/hide protein sequence
MAVSLSAATSFHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSG
ILLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFELLLICNIMFVETKRYMDFKSPGSQAQEGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIK
NAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLVEHLSNPWHNTVIHTLSS