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CmoCh12G005290 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G005290
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationCmo_Chr12:3243109..3244026
RNA-Seq ExpressionCmoCh12G005290
SyntenyCmoCh12G005290
Gene Ontology termsGO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERN10593.1 hypothetical protein AMTR_s00028p00129850 [Amborella trichopoda]1.3e-1656.57Show/hide
Query:  LVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSL--------------PRFGTALAARTETI-------QLLRLNAFWGKPASFGFE
        + +S  LPPLSLSDHL AL G P CFPLNDEAY PSSH PT TP +               R GTALAARTET+       Q LRLN F G+PAS GFE
Subjt:  LVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSL--------------PRFGTALAARTETI-------QLLRLNAFWGKPASFGFE

GEU30309.1 reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]8.2e-1466.18Show/hide
Query:  SSAQERSTSELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPR
        S A+   T   L   + ANLL +SAPLPPLSLS HL ALAGDP CFPL+DEAYPPSSH PTLTP + R
Subjt:  SSAQERSTSELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPR

KAG8363221.1 hypothetical protein BUALT_BualtPtG0005500 [Buddleja alternifolia]3.7e-1473.33Show/hide
Query:  SELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPR
        S+  R+ + ANLL +SAPLPPLSLSDHL ALAGDP CFPL+DEAYPPSSH PTLTP + R
Subjt:  SELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPR

MBA0681626.1 hypothetical protein [Gossypium aridum]1.5e-1557.14Show/hide
Query:  ANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTP----------SLPRFGTALAARTETI-------QLLRLNAFWGKPASFGFE
        ANLL +SAPLP LSLS +L ALAGD  CFP +DEAY P      L P          SLP+F TALAARTET+       QLLRLN F G+P SFGFE
Subjt:  ANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTP----------SLPRFGTALAARTETI-------QLLRLNAFWGKPASFGFE

PLY86165.1 hypothetical protein LSAT_6X94260 [Lactuca sativa]2.8e-1473.33Show/hide
Query:  SELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPR
        S+  R+ + ANLL +SAPLPPLSLSDHL ALAGDP CFPL+DEAYPPSSH PTLTP + R
Subjt:  SELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPR

TrEMBL top hitse value%identityAlignment
A0A2J6LFT8 Uncharacterized protein1.4e-1473.33Show/hide
Query:  SELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPR
        S+  R+ + ANLL +SAPLPPLSLSDHL ALAGDP CFPL+DEAYPPSSH PTLTP + R
Subjt:  SELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPR

A0A5K1HTC8 Uncharacterized protein (Fragment)2.0e-1385.11Show/hide
Query:  ANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTP
        ANLL +SAPLPPLSLS HL ALAGDP CFPL+DEAYPPSSH PTLTP
Subjt:  ANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTP

A0A6L2J018 Reverse transcriptase domain-containing protein3.9e-1466.18Show/hide
Query:  SSAQERSTSELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPR
        S A+   T   L   + ANLL +SAPLPPLSLS HL ALAGDP CFPL+DEAYPPSSH PTLTP + R
Subjt:  SSAQERSTSELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPR

A0A7J8X2X3 Uncharacterized protein7.2e-1657.14Show/hide
Query:  ANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTP----------SLPRFGTALAARTETI-------QLLRLNAFWGKPASFGFE
        ANLL +SAPLP LSLS +L ALAGD  CFP +DEAY P      L P          SLP+F TALAARTET+       QLLRLN F G+P SFGFE
Subjt:  ANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTP----------SLPRFGTALAARTETI-------QLLRLNAFWGKPASFGFE

W1PRB5 Uncharacterized protein6.5e-1756.57Show/hide
Query:  LVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSL--------------PRFGTALAARTETI-------QLLRLNAFWGKPASFGFE
        + +S  LPPLSLSDHL AL G P CFPLNDEAY PSSH PT TP +               R GTALAARTET+       Q LRLN F G+PAS GFE
Subjt:  LVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSL--------------PRFGTALAARTETI-------QLLRLNAFWGKPASFGFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAGCAAACCTCCTAGTTATCCCTATTCATCATCGGCGCAAGAACGCTCGACCAGTGAGCTATTACGCACTCTTTCAAGGGCAAACCTCCTGGTTATCTCTGCACC
CTTACCTCCTTTATCACTGAGCGATCATTTAGAGGCCTTAGCTGGTGATCCAAGTTGTTTCCCTCTCAACGATGAAGCTTATCCACCATCGTCTCATTGCCCGACCTTGA
CCCCTAGTTTGCCTCGATTTGGTACCGCTCTTGCGGCCCGCACCGAAACAATTCAACTGCTCCGCCTCAACGCATTTTGGGGAAAACCAGCTAGTTTTGGGTTCGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAGCAAACCTCCTAGTTATCCCTATTCATCATCGGCGCAAGAACGCTCGACCAGTGAGCTATTACGCACTCTTTCAAGGGCAAACCTCCTGGTTATCTCTGCACC
CTTACCTCCTTTATCACTGAGCGATCATTTAGAGGCCTTAGCTGGTGATCCAAGTTGTTTCCCTCTCAACGATGAAGCTTATCCACCATCGTCTCATTGCCCGACCTTGA
CCCCTAGTTTGCCTCGATTTGGTACCGCTCTTGCGGCCCGCACCGAAACAATTCAACTGCTCCGCCTCAACGCATTTTGGGGAAAACCAGCTAGTTTTGGGTTCGAGTGA
Protein sequenceShow/hide protein sequence
MASKPPSYPYSSSAQERSTSELLRTLSRANLLVISAPLPPLSLSDHLEALAGDPSCFPLNDEAYPPSSHCPTLTPSLPRFGTALAARTETIQLLRLNAFWGKPASFGFE