; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G005300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G005300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPXMP2/4 family protein 4-like
Genome locationCmo_Chr12:3244237..3246922
RNA-Seq ExpressionCmoCh12G005300
SyntenyCmoCh12G005300
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007248 - Mpv17/PMP22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585699.1 PXMP2/4 family protein 4, partial [Cucurbita argyrosperma subsp. sororia]1.6e-8697.06Show/hide
Query:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
        MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQS LPSSRHRFSSFSSPLKSGTGVIRWYLRKLD++PFITKSISSS
Subjt:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS

Query:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMST+SPRRDYLSTFKKI LGQAV
Subjt:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

KAG7020601.1 PXMP2/4 family protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-8899.41Show/hide
Query:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
        MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSF SSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
Subjt:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS

Query:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
Subjt:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

XP_022951025.1 PXMP2/4 family protein 4-like [Cucurbita moschata]6.0e-89100Show/hide
Query:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
        MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
Subjt:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS

Query:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
Subjt:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

XP_023002127.1 protein SYM1-like [Cucurbita maxima]3.2e-8293.53Show/hide
Query:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
        MNSL RRCGLLLRPVAARINV PKATV SKI WRAYFSFRSSPMGFRIR SKISCQS  PSSRH+FSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
Subjt:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS

Query:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMST+SPR+DYLSTFKKI LGQAV
Subjt:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

XP_023538047.1 PXMP2/4 family protein 4-like [Cucurbita pepo subsp. pepo]2.6e-8495.29Show/hide
Query:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
        MNSL RRCGLL+RPVAARINVIPKATVSSKI WRAYFSFRSSPMGFRIRESKISCQS LPSSRHRFSSFSSPLKSGTGVIRWYLRKLD++PFITKSISSS
Subjt:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS

Query:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMST+SPRRDYLSTFKKI LGQAV
Subjt:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

TrEMBL top hitse value%identityAlignment
A0A6J1BSL7 PXMP2/4 family protein 44.4e-6174.29Show/hide
Query:  MNSLRRRCGLLLRP-----VAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITK
        MNSL RRCG LLRP     + A IN    A+VSSKI WRAYFSF  S   FRIR +KISC S  PS+ H FSS SS  K  TG + WYLRKLDT+PFITK
Subjt:  MNSLRRRCGLLLRP-----VAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITK

Query:  SISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        SI+SSLIY AADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFN MST+SP+RD LSTFKKI LGQAV
Subjt:  SISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

A0A6J1GGF6 PXMP2/4 family protein 4-like2.9e-89100Show/hide
Query:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
        MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
Subjt:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS

Query:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
Subjt:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

A0A6J1HHJ7 PXMP2/4 family protein 3-like1.0e-6272.94Show/hide
Query:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
        +NSLRRRCG LLRPV A I+   KA+VS+KI WR+YFSF SSPM FR+RESK+ C + L + R+RF S  S  KS  G + WY+RKLDT+PFITKSI+SS
Subjt:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS

Query:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        LIY A+DLTSQMIT+PSPGSFDLIRTTRM AYGLLILGPSQHLWFNFMST+SP RD LSTFKK+ LGQAV
Subjt:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

A0A6J1K760 PXMP2/4 family protein 3-like3.0e-6272.35Show/hide
Query:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
        +NSLRRRCG LLRPV A I++  KA+VS+KI WR+YFSF SSPM FR+RESKI C + L + R+RF S  S  KS  G + WY+RKLDT+PFITKS +SS
Subjt:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS

Query:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        LIY A+DLTSQMIT+PSPGS DLIRTTRM AYGLLILGPSQHLWFNFMST+SP RD LSTFKK+ LGQAV
Subjt:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

A0A6J1KSN2 protein SYM1-like1.5e-8293.53Show/hide
Query:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
        MNSL RRCGLLLRPVAARINV PKATV SKI WRAYFSFRSSPMGFRIR SKISCQS  PSSRH+FSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS
Subjt:  MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSS

Query:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMST+SPR+DYLSTFKKI LGQAV
Subjt:  LIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

SwissProt top hitse value%identityAlignment
P0CQ38 Protein SYM11.6e-0426.37Show/hide
Query:  GVIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQ
        G++  Y   L   P +   ISS++++   D+ +Q +        DL RT R+  +G ++  P+ +LWF  +  +  R  + +TF ++ L Q
Subjt:  GVIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQ

P0CQ39 Protein SYM11.6e-0426.37Show/hide
Query:  GVIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQ
        G++  Y   L   P +   ISS++++   D+ +Q +        DL RT R+  +G ++  P+ +LWF  +  +  R  + +TF ++ L Q
Subjt:  GVIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQ

Q2TXA2 Protein sym13.9e-0636.62Show/hide
Query:  VIRWYLRKLDTYPFITKSISSSLIYVAAD-LTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFM
        + RWY  KL   P +T S++S++++ + D L  Q++        D  RT RMA YG  I GP+   WF F+
Subjt:  VIRWYLRKLDTYPFITKSISSSLIYVAAD-LTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFM

Q4IPX8 Protein SYM14.6e-0735.21Show/hide
Query:  IRWYLRKLDTYPFITKSISSSLIYVAADLTS-QMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMS
        IRWY  +L   P +T+S++++ ++   D+T+ Q++        DL+RT RMA YG  + GP    WF F++
Subjt:  IRWYLRKLDTYPFITKSISSSLIYVAADLTS-QMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMS

Q54FR4 PXMP2/4 family protein 41.1e-0833.33Show/hide
Query:  YLRKLDTYPFITKSISSSLIYVAADLTSQMITL--PSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        YL +L  YP  TK+++S  +Y+ +D   Q I L       +D  R+ RMA +G  + GP  H WF ++    P++ Y   F K+ + Q V
Subjt:  YLRKLDTYPFITKSISSSLIYVAADLTSQMITL--PSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

Arabidopsis top hitse value%identityAlignment
AT2G14860.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein5.7e-2942.44Show/hide
Query:  LLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSSLIYVAADLT
        L+ R  AA  +   K  V+     R Y  FRS  +  R +E+ +S     PS    FSS SSP  S  G + WYL  + ++P +TKS++SSLIY+AADL+
Subjt:  LLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSSLIYVAADLT

Query:  SQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAVKVAVRLLLDYS
        SQ I   S  S+DL+RT RM  YGL +LGP+ H WFNFMS + P++D ++TFKK+ +GQ +   +  ++ +S
Subjt:  SQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAVKVAVRLLLDYS

AT4G33905.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein3.1e-2755.77Show/hide
Query:  SSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVL
        SS SS   S  G I WYL  + + P +TKS++SSLIY+AADL+SQ I   S  S+DL+RT RM  YGLLILGP+ H WFN MS++ P+RD ++TFKK+ +
Subjt:  SSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVL

Query:  GQAV
        GQ V
Subjt:  GQAV

AT5G19750.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein1.8e-0628.26Show/hide
Query:  VIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV
        ++ WY   L   P +TK+++++L+ +  DL  Q +T+    S D  RT      GL ++GP+ H W+ ++S V           +++L Q V
Subjt:  VIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAV

AT5G43140.1 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein2.9e-3355.83Show/hide
Query:  SRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTF
        SR+  +  SS        +RWYLRKL+++PF+TKSI++S+IY+AADLTSQMIT+   GSFDLIRT RMA++GL+ LGPSQHLWF+++S + P+RD L+TF
Subjt:  SRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSSLIYVAADLTSQMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTF

Query:  KKIVLGQAVKVAVRLLLDYS
        KKI++GQ +   V   + YS
Subjt:  KKIVLGQAVKVAVRLLLDYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGCTTGCGTCGACGTTGTGGCTTGCTTCTGCGGCCGGTCGCTGCCCGTATCAATGTAATCCCCAAAGCTACCGTCTCTTCTAAGATTCACTGGAGGGCGTATTT
CAGTTTCAGGTCATCTCCAATGGGATTCAGAATTAGAGAAAGTAAAATTTCATGCCAATCTTTCTTGCCTTCGTCTCGGCATCGATTCTCTTCCTTCTCTTCTCCATTGA
AATCAGGCACTGGAGTTATCCGATGGTATTTAAGGAAACTCGACACCTACCCGTTTATCACTAAAAGTATCAGTTCTTCGCTCATTTATGTGGCTGCTGATCTAACCTCT
CAGATGATTACATTGCCATCTCCTGGCTCTTTTGATTTAATAAGGACAACACGGATGGCTGCTTATGGATTGCTGATATTGGGGCCATCCCAGCATTTGTGGTTTAATTT
CATGTCCACGGTCTCACCAAGGCGAGATTATTTGTCAACTTTCAAGAAGATTGTTCTAGGGCAGGCTGTGAAAGTGGCAGTGAGATTGCTGCTAGATTACAGCGAGATTT
ACTTCCAACATTGTTAA
mRNA sequenceShow/hide mRNA sequence
CGTTGGTCTGCTTGCTCCCGATTCACAGGCGTGGCTGTCTCGTTGATGGCCGGACATTAACGTCGTTTTCGCACCCTGAACTCTGAATCGACGCTCTCGAAATCACTGAG
CGAGCAAAGGGAATCGGAATAAAGCTCGTGTAATTCGATGAATAGCTTGCGTCGACGTTGTGGCTTGCTTCTGCGGCCGGTCGCTGCCCGTATCAATGTAATCCCCAAAG
CTACCGTCTCTTCTAAGATTCACTGGAGGGCGTATTTCAGTTTCAGGTCATCTCCAATGGGATTCAGAATTAGAGAAAGTAAAATTTCATGCCAATCTTTCTTGCCTTCG
TCTCGGCATCGATTCTCTTCCTTCTCTTCTCCATTGAAATCAGGCACTGGAGTTATCCGATGGTATTTAAGGAAACTCGACACCTACCCGTTTATCACTAAAAGTATCAG
TTCTTCGCTCATTTATGTGGCTGCTGATCTAACCTCTCAGATGATTACATTGCCATCTCCTGGCTCTTTTGATTTAATAAGGACAACACGGATGGCTGCTTATGGATTGC
TGATATTGGGGCCATCCCAGCATTTGTGGTTTAATTTCATGTCCACGGTCTCACCAAGGCGAGATTATTTGTCAACTTTCAAGAAGATTGTTCTAGGGCAGGCTGTGAAA
GTGGCAGTGAGATTGCTGCTAGATTACAGCGAGATTTACTTCCAACATTGTTAA
Protein sequenceShow/hide protein sequence
MNSLRRRCGLLLRPVAARINVIPKATVSSKIHWRAYFSFRSSPMGFRIRESKISCQSFLPSSRHRFSSFSSPLKSGTGVIRWYLRKLDTYPFITKSISSSLIYVAADLTS
QMITLPSPGSFDLIRTTRMAAYGLLILGPSQHLWFNFMSTVSPRRDYLSTFKKIVLGQAVKVAVRLLLDYSEIYFQHC