; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G005880 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G005880
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationCmo_Chr12:3616703..3617236
RNA-Seq ExpressionCmoCh12G005880
SyntenyCmoCh12G005880
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585753.1 hypothetical protein SDJN03_18486, partial [Cucurbita argyrosperma subsp. sororia]1.4e-8497.74Show/hide
Query:  MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA
        MEHSTTTTLFFILLIVHLAGAAM SDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP+PSPPPPPVPVA
Subjt:  MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA

Query:  ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK
        ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSP FLWALFLFHLV VLVVVK
Subjt:  ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK

KAG7020664.1 hypothetical protein SDJN02_17350, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-8497.18Show/hide
Query:  MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA
        MEHSTTTTLFFILLIVHLAGAAM SDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP+PSPPPPPVPVA
Subjt:  MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA

Query:  ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK
        ASSHSPPPPA+KYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSP FLWALFLFHLV VLVVVK
Subjt:  ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK

XP_022951103.1 extensin-3-like [Cucurbita moschata]2.4e-87100Show/hide
Query:  MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA
        MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA
Subjt:  MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA

Query:  ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK
        ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK
Subjt:  ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK

XP_023002897.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]2.0e-7096Show/hide
Query:  MASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPP
        MASD+HRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP+PSPPPPPVP  ASSHSPPPPAFKYYFSLPPPPP
Subjt:  MASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPP

Query:  VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCV
        VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSP FLWALFLFHLVC+
Subjt:  VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCV

XP_023536686.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]1.0e-8295.48Show/hide
Query:  MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA
        MEHSTTTTLFFILLI  LAG AMASD+HRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP+PSPPPPPVP A
Subjt:  MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA

Query:  ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK
         SSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSP FLWALFLFHLVCVLVVVK
Subjt:  ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK

TrEMBL top hitse value%identityAlignment
A0A0A0KD44 Uncharacterized protein4.3e-4265.78Show/hide
Query:  MEHSTTTTLF---FILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICA--PPPPPTVTLKSPPPVPHSPPMASFPLNPPP-----SPPRPSP
        MEH + T  F    ILLI+ LA A    ++ R+VEVVPPVSLLCISECSTCP ICA  PPPPP + LKSPPPVPH PP+A FPLN PP     SPP P P
Subjt:  MEHSTTTTLF---FILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICA--PPPPPTVTLKSPPPVPHSPPMASFPLNPPP-----SPPRPSP

Query:  SPPPPP-VPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPT-TAAPHGNT--NAYNYYFY--ASNSCSLNSPVFL-WALFLFHLV
        SPPPPP    A SSHSPPPPAF+YYF+LPPPPPVLIP P+PP+ TA PHGNT  NAYNYYFY  AS+S   + P  L W LFLFHL+
Subjt:  SPPPPP-VPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPT-TAAPHGNT--NAYNYYFY--ASNSCSLNSPVFL-WALFLFHLV

A0A5A7VEH7 Classical arabinogalactan protein 9-like4.1e-4567.57Show/hide
Query:  MEHSTTTTLF---FILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPP-----SPPRPSPSP
        MEH + T  F    ILLI+ LAGA  A ++ R+V+VVPPVSLLCISECSTCP ICAPPPPP   LKSPPPVPH PP+A FPLN PP     SPP PSPSP
Subjt:  MEHSTTTTLF---FILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPP-----SPPRPSPSP

Query:  PPPP-VPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPT-TAAPHGNT--NAYNYYFY--ASNSCSLNSP-VFLWALFLFHLV
        PPPP    A SSHSPPPPAF+YYF+LPPPPPVLIP P+PP+ TAAP GNT  NAYNYYFY  AS+S   + P  F W LFLFHL+
Subjt:  PPPP-VPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPT-TAAPHGNT--NAYNYYFY--ASNSCSLNSP-VFLWALFLFHLV

A0A6J1BT26 leucine-rich repeat extensin-like protein 31.8e-4873.37Show/hide
Query:  ILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSP----PRPSPSPPPPP---VPVAASSH
        ILLI+ LAGAA AS++HRLVEVVPPVSLLCISECSTCPVIC+PPPPPT  LKSPP  PHSPP+A  PLN PPSP    P PSPSPPPPP    P+AA SH
Subjt:  ILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSP----PRPSPSPPPPP---VPVAASSH

Query:  SPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNT--NAYNYYFYASNSCSLNSP-VFLWALFLFHLV
         PPPPAF YYF+LPPPPPVLIP P+PP TAAPHGNT  NAYNYYFYAS S SL+ P  +L ALF+F  +
Subjt:  SPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNT--NAYNYYFYASNSCSLNSP-VFLWALFLFHLV

A0A6J1GGS2 extensin-3-like1.1e-87100Show/hide
Query:  MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA
        MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA
Subjt:  MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVA

Query:  ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK
        ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK
Subjt:  ASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK

A0A6J1KKV8 leucine-rich repeat extensin-like protein 39.7e-7196Show/hide
Query:  MASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPP
        MASD+HRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP+PSPPPPPVP  ASSHSPPPPAFKYYFSLPPPPP
Subjt:  MASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPP

Query:  VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCV
        VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSP FLWALFLFHLVC+
Subjt:  VLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCV

SwissProt top hitse value%identityAlignment
Q9FLQ7 Formin-like protein 209.9e-0447.83Show/hide
Query:  PPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPP-RPSPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPL------PPTTAAPHG
        PPPPP  +  SPPP P  PP    P  PPP PP   SP PPPPP P   S   PPPP F +  S+PPPPP   P P+      PP     HG
Subjt:  PPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPP-RPSPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPL------PPTTAAPHG

Q9T0K5 Leucine-rich repeat extensin-like protein 37.6e-0448.42Show/hide
Query:  STCPVICAPPP--PPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP--SPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAP
        ST P + +PPP  PP      PPP P  PP+ S P  PPP PP P  SP PPPPP P     +SPPPP+       PPPPPV  P P PP    P
Subjt:  STCPVICAPPP--PPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP--SPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAP

Arabidopsis top hitse value%identityAlignment
AT4G13340.1 Leucine-rich repeat (LRR) family protein5.4e-0548.42Show/hide
Query:  STCPVICAPPP--PPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP--SPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAP
        ST P + +PPP  PP      PPP P  PP+ S P  PPP PP P  SP PPPPP P     +SPPPP+       PPPPPV  P P PP    P
Subjt:  STCPVICAPPP--PPTVTLKSPPPVPHSPPMASFPLNPPPSPPRP--SPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPLPPTTAAP

AT5G07740.1 actin binding7.0e-0547.83Show/hide
Query:  PPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPP-RPSPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPL------PPTTAAPHG
        PPPPP  +  SPPP P  PP    P  PPP PP   SP PPPPP P   S   PPPP F +  S+PPPPP   P P+      PP     HG
Subjt:  PPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPP-RPSPSPPPPPVPVAASSHSPPPPAFKYYFSLPPPPPVLIPEPL------PPTTAAPHG

AT5G11990.1 proline-rich family protein5.2e-0839.33Show/hide
Query:  LFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPP---SPPRPSPSPPPPPVPVAASSHS
        +  I L++ +  A+  SD      V+ P   LCISECSTCP IC+PPP       SPPP P S P++S P  PPP   SPP  S S  PPP+        
Subjt:  LFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPP---SPPRPSPSPPPPPVPVAASSHS

Query:  PPPPAFKYYFSLPPPPPVL-----IPEPLPPTTAAPHGNTNA---------YNYYFYASNSCSLNSPVFLWALFLFHL
        PPPP F Y+ S PPPPP+       P  +P +  +P G +           Y Y++ ASN+  L S  FL AL +  L
Subjt:  PPPPAFKYYFSLPPPPPVL-----IPEPLPPTTAAPHGNTNA---------YNYYFYASNSCSLNSPVFLWALFLFHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACATTCCACTACAACCACCCTCTTCTTCATTCTTTTGATCGTCCACCTCGCCGGAGCCGCCATGGCCTCCGACAACCACCGTCTCGTCGAGGTAGTGCCTCCGGT
AAGCCTCCTCTGTATCAGCGAATGCTCAACTTGCCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACACTCAAGTCTCCTCCACCGGTGCCTCACTCCCCTCCGA
TGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCATCCCCATCACCACCGCCGCCTCCAGTGCCGGTGGCAGCTTCATCTCATTCCCCACCGCCTCCCGCT
TTCAAATACTATTTCAGCTTGCCACCACCGCCGCCAGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTT
CTACGCTTCGAATTCATGTTCTCTCAATTCTCCGGTGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGTGTGTCTTGGTGGTGGTGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACATTCCACTACAACCACCCTCTTCTTCATTCTTTTGATCGTCCACCTCGCCGGAGCCGCCATGGCCTCCGACAACCACCGTCTCGTCGAGGTAGTGCCTCCGGT
AAGCCTCCTCTGTATCAGCGAATGCTCAACTTGCCCTGTCATATGCGCACCCCCACCACCGCCCACGGTGACACTCAAGTCTCCTCCACCGGTGCCTCACTCCCCTCCGA
TGGCTTCCTTCCCACTCAACCCACCCCCATCCCCACCTCGACCATCCCCATCACCACCGCCGCCTCCAGTGCCGGTGGCAGCTTCATCTCATTCCCCACCGCCTCCCGCT
TTCAAATACTATTTCAGCTTGCCACCACCGCCGCCAGTGCTGATCCCGGAGCCTCTGCCGCCGACGACGGCGGCGCCTCATGGAAATACCAATGCTTATAATTACTACTT
CTACGCTTCGAATTCATGTTCTCTCAATTCTCCGGTGTTTTTGTGGGCTCTGTTTCTCTTCCATTTGGTGTGTGTCTTGGTGGTGGTGAAGTGA
Protein sequenceShow/hide protein sequence
MEHSTTTTLFFILLIVHLAGAAMASDNHRLVEVVPPVSLLCISECSTCPVICAPPPPPTVTLKSPPPVPHSPPMASFPLNPPPSPPRPSPSPPPPPVPVAASSHSPPPPA
FKYYFSLPPPPPVLIPEPLPPTTAAPHGNTNAYNYYFYASNSCSLNSPVFLWALFLFHLVCVLVVVK