; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G006050 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G006050
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNADH-ubiquinone oxidoreductase chain 5
Genome locationCmo_Chr12:3775333..3778471
RNA-Seq ExpressionCmoCh12G006050
SyntenyCmoCh12G006050
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585775.1 hypothetical protein SDJN03_18508, partial [Cucurbita argyrosperma subsp. sororia]1.3e-7698.19Show/hide
Query:  MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD
        +RGRTTNKRRTEFNAPALSLSLNSISQFLLH VSHCFKSSDLHRRPTSPEAKETRS+GAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD
Subjt:  MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD

Query:  VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
        VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

KAG7020712.1 hypothetical protein SDJN02_17399 [Cucurbita argyrosperma subsp. argyrosperma]4.6e-7798.8Show/hide
Query:  MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD
        +RGRTTNKRRTEFNAPALSLSLNSISQFLLH VSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD
Subjt:  MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD

Query:  VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
        VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

XP_008464874.1 PREDICTED: uncharacterized protein LOC103502637 isoform X1 [Cucumis melo]2.7e-5385.23Show/hide
Query:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVF
        LSLNSISQFL+ F+  CF+SS LH   +S EAK+ RSRG  +AMITRSNLVEQLREYQIRSKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVF
Subjt:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVF

Query:  SAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
        SAVSLYFRHMQLA ILVCITMLLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  SAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

XP_022951473.1 uncharacterized protein LOC111454282 [Cucurbita moschata]3.2e-78100Show/hide
Query:  MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD
        MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD
Subjt:  MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD

Query:  VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
        VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

XP_038884232.1 uncharacterized protein LOC120075129 [Benincasa hispida]4.5e-5687.76Show/hide
Query:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSA
        LSLNSISQFL+ FV  C KSS LH RP+S EAK+ +SRG+AMITRSNLVEQLREYQIRSKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVFSA
Subjt:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSA

Query:  VSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
        VSLYFRHMQLA ILVCITMLLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

TrEMBL top hitse value%identityAlignment
A0A0A0KIH9 Uncharacterized protein3.9e-5385.23Show/hide
Query:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVF
        LSLNSISQFL+ F+  CF SS LH   +S EAK+ RSRG  +AMITRSNLVEQLREYQIRSKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVF
Subjt:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVF

Query:  SAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
        SAVSLYFRHMQLA ILVCITMLLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  SAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

A0A1S3CMK7 uncharacterized protein LOC103502637 isoform X11.3e-5385.23Show/hide
Query:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVF
        LSLNSISQFL+ F+  CF+SS LH   +S EAK+ RSRG  +AMITRSNLVEQLREYQIRSKHEWASVS FSS SNITSSRVDVVIFVIWELIIL+FLVF
Subjt:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRG--AAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVF

Query:  SAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
        SAVSLYFRHMQLA ILVCITMLLL+CMKVTKQVRLARKKKRRMLLPLSM
Subjt:  SAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

A0A6J1G568 uncharacterized protein LOC1114507863.1e-5080.27Show/hide
Query:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSA
        LSLNSISQFL+ F+  C K   LHRRP    +++  SRGAAMITRSNLVEQLREYQIRSKH+WAS S FSS SNITSSRVDVVIFVIWELIIL+FLVFSA
Subjt:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSA

Query:  VSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
        VSLYFRHMQL  +LVCITMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  VSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

A0A6J1GHS6 uncharacterized protein LOC1114542821.6e-78100Show/hide
Query:  MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD
        MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD
Subjt:  MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVD

Query:  VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
        VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
Subjt:  VVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

A0A6J1KBR2 uncharacterized protein LOC1114940241.2e-4978.91Show/hide
Query:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSA
        LSLNSISQFL+ F+  C K    HRRP    +++  SRGAAMITRSNLVEQLREYQIRSKH+WAS S FSS SNITSSRVDVVIFVIWELIIL+FLVFSA
Subjt:  LSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSA

Query:  VSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM
        VSLYFRHMQL  +L+CITMLL++CMKVTKQ+RLARKKKRRMLLPLSM
Subjt:  VSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G20460.1 unknown protein2.0e-4185.85Show/hide
Query:  MITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRM
        MITRSNL EQLREYQIRSKH+WASVS FSS SN +SSRVDVV+FVIWEL+ILAF VFSAVSLYF+ +QLA ILVC+T+LLLICMKVTKQVRLARKKKRRM
Subjt:  MITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRM

Query:  LLPLSM
        LLPLSM
Subjt:  LLPLSM

AT1G76185.1 unknown protein2.4e-3981.13Show/hide
Query:  MITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRM
        MITRSNL EQLREYQIRSKH+WASVS FSS SN +SSRVDVV+FVIWEL++LA +VFSAVSLYFR +QLA IL+C+T+LLL+CMK+TKQVR ARKKKRRM
Subjt:  MITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELIILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRM

Query:  LLPLSM
        LLPLSM
Subjt:  LLPLSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGAAGAACAACAAATAAGAGAAGGACCGAATTCAACGCTCCTGCTCTCTCTCTTTCTCTCAATTCCATTTCTCAATTCCTCCTTCACTTCGTCTCTCACTGTTT
CAAATCCTCCGATCTCCACCGTCGCCCTACCTCCCCTGAGGCGAAGGAAACAAGGTCTCGGGGCGCTGCCATGATTACTCGGTCGAATCTGGTTGAGCAGTTGAGAGAAT
ACCAGATTCGATCGAAGCACGAGTGGGCTTCCGTCTCCTTATTTTCATCTGCCTCCAACATTACTTCTTCCAGGGTGGATGTTGTCATTTTTGTAATATGGGAACTCATT
ATTCTAGCGTTCTTGGTCTTTTCGGCAGTGTCTTTATATTTTCGACATATGCAATTGGCTTCTATTTTAGTGTGCATTACGATGCTGTTACTTATATGCATGAAAGTTAC
CAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGAAGAACAACAAATAAGAGAAGGACCGAATTCAACGCTCCTGCTCTCTCTCTTTCTCTCAATTCCATTTCTCAATTCCTCCTTCACTTCGTCTCTCACTGTTT
CAAATCCTCCGATCTCCACCGTCGCCCTACCTCCCCTGAGGCGAAGGAAACAAGGTCTCGGGGCGCTGCCATGATTACTCGGTCGAATCTGGTTGAGCAGTTGAGAGAAT
ACCAGATTCGATCGAAGCACGAGTGGGCTTCCGTCTCCTTATTTTCATCTGCCTCCAACATTACTTCTTCCAGGGTGGATGTTGTCATTTTTGTAATATGGGAACTCATT
ATTCTAGCGTTCTTGGTCTTTTCGGCAGTGTCTTTATATTTTCGACATATGCAATTGGCTTCTATTTTAGTGTGCATTACGATGCTGTTACTTATATGCATGAAAGTTAC
CAAGCAAGTGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCGATGTGAAAAGGTAACAACAGTGCAGAGACATACTAAAGTTTTATATGTTGTTTCC
AAATGTCCCAAATTATGTTCACAAAAGTTAGATTTGGTCCTAAATTTGTTCTATTGGGATCTGTAATGAGCAGGAAAGCAGATTATTTGAAAAATGGAATGAGATATGGG
TGAGTTGTTTAGGAGTTTGGCTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
Protein sequenceShow/hide protein sequence
MRGRTTNKRRTEFNAPALSLSLNSISQFLLHFVSHCFKSSDLHRRPTSPEAKETRSRGAAMITRSNLVEQLREYQIRSKHEWASVSLFSSASNITSSRVDVVIFVIWELI
ILAFLVFSAVSLYFRHMQLASILVCITMLLLICMKVTKQVRLARKKKRRMLLPLSM