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CmoCh12G006140 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G006140
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein DELETION OF SUV3 SUPPRESSOR 1(I)-like
Genome locationCmo_Chr12:3839327..3842117
RNA-Seq ExpressionCmoCh12G006140
SyntenyCmoCh12G006140
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006406 - mRNA export from nucleus (biological process)
GO:0043248 - proteasome assembly (biological process)
GO:0008541 - proteasome regulatory particle, lid subcomplex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007834 - DSS1/SEM1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585783.1 hypothetical protein SDJN03_18516, partial [Cucurbita argyrosperma subsp. sororia]3.5e-2995.89Show/hide
Query:  MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MMATE KAATEEVKVDLFEDDDEFEEFEINEEWEVK+G+EITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
Subjt:  MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

XP_004144232.1 protein DSS1 HOMOLOG ON CHROMOSOME V [Cucumis sativus]5.6e-2793.06Show/hide
Query:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATE KAA+EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELE+NA +K
Subjt:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

XP_022951372.1 protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucurbita moschata]4.9e-31100Show/hide
Query:  MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
Subjt:  MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

XP_023002030.1 protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucurbita maxima]3.0e-2895.83Show/hide
Query:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATEPKA TEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELE NA RK
Subjt:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

XP_023537610.1 protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucurbita pepo subsp. pepo]1.6e-2997.26Show/hide
Query:  MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MMATE KAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEI QQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
Subjt:  MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

TrEMBL top hitse value%identityAlignment
A0A0A0KIG9 Uncharacterized protein2.7e-2793.06Show/hide
Query:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATE KAA+EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELE+NA +K
Subjt:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

A0A1S3CMK4 protein DSS1 HOMOLOG ON CHROMOSOME V-like2.7e-2793.06Show/hide
Query:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATE KAA+EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELE+NA +K
Subjt:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

A0A6J1GHI9 protein DSS1 HOMOLOG ON CHROMOSOME V-like2.4e-31100Show/hide
Query:  MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
Subjt:  MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

A0A6J1KGK6 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like3.6e-2793.06Show/hide
Query:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATE KAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELE N  +K
Subjt:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

A0A6J1KMT1 protein DSS1 HOMOLOG ON CHROMOSOME V-like1.4e-2895.83Show/hide
Query:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MATEPKA TEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELE NA RK
Subjt:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

SwissProt top hitse value%identityAlignment
P60896 26S proteasome complex subunit SEM14.4e-0648.39Show/hide
Query:  EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVR
        + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE +  +
Subjt:  EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVR

Q3ZBR6 26S proteasome complex subunit SEM14.4e-0648.39Show/hide
Query:  EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVR
        + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE +  +
Subjt:  EEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVR

Q54K21 Probable 26S proteasome complex subunit sem12.0e-0648.61Show/hide
Query:  EPKAAT--EEVKVDLFEDDDEFEEFEINEEWEVKEGKEIT-QQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        EPKA    +E  V++ E DDEFEEFE N    + EG++ + +QWEDDWD D ++DDFS QL+ E+E ++  K
Subjt:  EPKAAT--EEVKVDLFEDDDEFEEFEINEEWEVKEGKEIT-QQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

Q9FL96 Protein DSS1 HOMOLOG ON CHROMOSOME V2.8e-2173.97Show/hide
Query:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MA EPKAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS QLK+ELE+ + +K
Subjt:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

Q9XIR8 Protein DELETION OF SUV3 SUPPRESSOR 1(I)2.8e-2174.32Show/hide
Query:  MATEPKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MA EPKAAT E VK+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS QL++ELE+   +K
Subjt:  MATEPKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

Arabidopsis top hitse value%identityAlignment
AT1G64750.1 deletion of SUV3 suppressor 1(I)2.0e-2274.32Show/hide
Query:  MATEPKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MA EPKAAT E VK+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS QL++ELE+   +K
Subjt:  MATEPKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

AT1G64750.2 deletion of SUV3 suppressor 1(I)2.0e-2274.32Show/hide
Query:  MATEPKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MA EPKAAT E VK+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS QL++ELE+   +K
Subjt:  MATEPKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK

AT1G64750.3 deletion of SUV3 suppressor 1(I)2.1e-1647.83Show/hide
Query:  MATEPKAATEE-VKVDLFEDDDEFEEFEINE-----------------------------------------EW-EVKEGKEITQQWEDDWDDDDVNDDF
        MA EPKAAT E VK+DLFEDDDEFEEFEINE                                         +W E +E KE++QQWEDDWDDDDVNDDF
Subjt:  MATEPKAATEE-VKVDLFEDDDEFEEFEINE-----------------------------------------EW-EVKEGKEITQQWEDDWDDDDVNDDF

Query:  SLQLKRELEHNAVRK
        S QL++ELE+   +K
Subjt:  SLQLKRELEHNAVRK

AT5G45010.1 DSS1 homolog on chromosome V2.0e-2273.97Show/hide
Query:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK
        MA EPKAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS QLK+ELE+ + +K
Subjt:  MATEPKAATEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCAACTGAACCGAAGGCAGCTACTGAGGAAGTGAAAGTTGACCTCTTCGAGGATGACGATGAGTTCGAAGAGTTTGAGATTAATGAAGAGTGGGAAGTCAAGGA
AGGTAAAGAAATTACTCAGCAGTGGGAAGACGACTGGGACGATGACGATGTGAATGACGACTTCTCGTTGCAACTTAAGAGAGAATTGGAGCACAATGCTGTGAGAAAAT
GA
mRNA sequenceShow/hide mRNA sequence
GAAGTGCAGAAGCTGAACGACTTGTTCCTCAAGATATCTGGGTCAATTTTTTCACTACAAATCAAGCAACACAAGACTCCCGCGATCTTCCCAATCTTTCTCACAACTCG
CTCTCTCAAGATTTGTAGATCAGTGTGATCTTTATGATGGCAACTGAACCGAAGGCAGCTACTGAGGAAGTGAAAGTTGACCTCTTCGAGGATGACGATGAGTTCGAAGA
GTTTGAGATTAATGAAGAGTGGGAAGTCAAGGAAGGTAAAGAAATTACTCAGCAGTGGGAAGACGACTGGGACGATGACGATGTGAATGACGACTTCTCGTTGCAACTTA
AGAGAGAATTGGAGCACAATGCTGTGAGAAAATGAAGAGACACTTAGGAATCTTATTCAACCAGGAATGTACCAAAAACTTCAACCATTATGAACTTGCTGTCATGAATA
CTGATGCCCATTCTTCCATAATATTTGAATTTTCTTCCTAGTACACGTTAGTGATACTAACACCATACATCGAATGCTTGCTTGGCTAGCTGCATCAACTTGGATCCGAC
CTTGAGGTTTAAAATTTGATCAATTTTGGGTGTGGCCTTGTGAGAAGGAATTGATGAGGGGCA
Protein sequenceShow/hide protein sequence
MMATEPKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELEHNAVRK