; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G006310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G006310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA-binding protein 24
Genome locationCmo_Chr12:3949107..3953065
RNA-Seq ExpressionCmoCh12G006310
SyntenyCmoCh12G006310
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR037366 - BOULE/DAZ family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146763.1 RNA-binding protein 24-A [Cucumis sativus]1.5e-14289.86Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQH P PSS+SGS+SSSGFLNSPFGDTTYTKVFVGGLAWETQS+TMR YFEQFGEILEAVVITDKNTGRSKGYGFVTF+DPESARRAC+DPTPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP---------QQYLQIYGVPGSASPT
        RANCNLASLGRPRPP+SY  GR R PAVYVG MQPNRG YIGNFGYQQPVSY YQQGLAYPPY YATYGPEYVYP         QQYLQIYGVPGSASPT
Subjt:  RANCNLASLGRPRPPISY--GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP---------QQYLQIYGVPGSASPT

Query:  FYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
         YHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  FYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

XP_008464801.1 PREDICTED: RNA-binding protein 24-A [Cucumis melo]2.6e-14289.86Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQH P PSS+SGS+SSSGFLNSPFGDTTYTKVFVGGLAWETQS+TMR YFEQFGEILEAVVITDKNTGRSKGYGFVTF+DPESARRAC+DPTPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP---------QQYLQIYGVPGSASPT
        RANCNLASLGRPRPPIS+  GR R PAVYVG MQPNRG YIGNFGYQQPVSY YQQGLAYPPY YATYGPEYVYP         QQYLQIYGVPGSASPT
Subjt:  RANCNLASLGRPRPPISY--GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP---------QQYLQIYGVPGSASPT

Query:  FYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
         YHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  FYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

XP_022951231.1 RNA-binding protein 24-B-like [Cucurbita moschata]3.7e-157100Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV
        RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV
Subjt:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV

Query:  PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

XP_023002633.1 RNA-binding protein 24-B-like [Cucurbita maxima]2.3e-15196.73Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTF+ PESARRACSD TPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV
        RANCNLASLGRPRPPISYGRFRPPA+YVG MQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPT YHYGQLGQTV
Subjt:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV

Query:  PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        PGGHGYGA+HGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIP PVAAQPQFVVHS SQFVQGSGSDQTSG
Subjt:  PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

XP_023537721.1 RNA-binding protein 24-B-like [Cucurbita pepo subsp. pepo]7.7e-15598.55Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYF+QFGEILEAVVITDKNTGRSKGYGFVTF+DPESARRACSDPTPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV
        RANCNLASLGRPRPPISYGRFRPPAVYVG MQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPT YHYGQLGQTV
Subjt:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV

Query:  PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

TrEMBL top hitse value%identityAlignment
A0A1S3CME8 RNA-binding protein 24-A1.2e-14289.86Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQH P PSS+SGS+SSSGFLNSPFGDTTYTKVFVGGLAWETQS+TMR YFEQFGEILEAVVITDKNTGRSKGYGFVTF+DPESARRAC+DPTPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP---------QQYLQIYGVPGSASPT
        RANCNLASLGRPRPPIS+  GR R PAVYVG MQPNRG YIGNFGYQQPVSY YQQGLAYPPY YATYGPEYVYP         QQYLQIYGVPGSASPT
Subjt:  RANCNLASLGRPRPPISY--GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP---------QQYLQIYGVPGSASPT

Query:  FYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
         YHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  FYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

A0A5D3CHF9 RNA-binding protein 24-A1.2e-14289.86Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQH P PSS+SGS+SSSGFLNSPFGDTTYTKVFVGGLAWETQS+TMR YFEQFGEILEAVVITDKNTGRSKGYGFVTF+DPESARRAC+DPTPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP---------QQYLQIYGVPGSASPT
        RANCNLASLGRPRPPIS+  GR R PAVYVG MQPNRG YIGNFGYQQPVSY YQQGLAYPPY YATYGPEYVYP         QQYLQIYGVPGSASPT
Subjt:  RANCNLASLGRPRPPISY--GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP---------QQYLQIYGVPGSASPT

Query:  FYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
         YHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  FYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

A0A6J1G3W1 RNA-binding protein 24-A8.0e-14289.44Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQH   PSS+SGS+SSSGFLNSPFGDTTYTKVFVGGLAWETQS+TMR YFEQFGEILEAVVITDKNTGRSKGYGFVTF+DPESARRAC DPTPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP---------QQYLQIYGVPGSASPTFY
        RANCNLASLGRPRPPISYGR RPPAVYVG MQPNRG YIGNFGYQQPVSY YQQGLAYPPY YATYGPEYVYP         QQYLQIYGVPGSASP  Y
Subjt:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP---------QQYLQIYGVPGSASPTFY

Query:  HYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        HYGQLGQTVPGGHGYGAVHGY MPSPQIVQF GPNVN LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Subjt:  HYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

A0A6J1GGZ8 RNA-binding protein 24-B-like1.8e-157100Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV
        RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV
Subjt:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV

Query:  PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

A0A6J1KR06 RNA-binding protein 24-B-like1.1e-15196.73Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTF+ PESARRACSD TPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV
        RANCNLASLGRPRPPISYGRFRPPA+YVG MQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPT YHYGQLGQTV
Subjt:  RANCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV

Query:  PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        PGGHGYGA+HGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIP PVAAQPQFVVHS SQFVQGSGSDQTSG
Subjt:  PGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

SwissProt top hitse value%identityAlignment
Q6GQD3 RNA-binding protein 24-A8.3e-2739.44Show/hide
Query:  DTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVY
        DTTYTK+FVGGL + T   ++R YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R   P   
Subjt:  DTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVY

Query:  VGRMQPNRGAYIGNFGYQQPVSYP---YQQGLAYP---PYSYATYGPEYVYPQ-QYLQIYGVPGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIV
         G  Q +       FG      YP    Q G+  P   P +  +  P   Y    Y Q      +A+   Y Y       P   GY    GYG   PQ +
Subjt:  VGRMQPNRGAYIGNFGYQQPVSYP---YQQGLAYP---PYSYATYGPEYVYPQ-QYLQIYGVPGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIV

Query:  QFSGPNVNALTSS
          + P   A  ++
Subjt:  QFSGPNVNALTSS

Q6P8A7 RNA-binding protein 242.8e-2739.05Show/hide
Query:  DTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVY
        DTTYTK+FVGGL + T   ++R YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R   P   
Subjt:  DTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVY

Query:  VGRMQPNRGAYIGNFGYQQPVSYPY---QQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV-PGGHGYGAVHGYGMPSPQIVQFS
         G  Q +       FG      YP+   Q G+  P    A       Y       Y    +A+     Y Q      P   GY    GYG   PQ +  +
Subjt:  VGRMQPNRGAYIGNFGYQQPVSYPY---QQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV-PGGHGYGAVHGYGMPSPQIVQFS

Query:  GPNVNALTSS
         P   A  ++
Subjt:  GPNVNALTSS

Q9BX46 RNA-binding protein 242.4e-2639.62Show/hide
Query:  DTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLG-RPR---PPISYGRFRP
        DTTYTK+FVGGL + T   ++R YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG +PR   P  ++G  + 
Subjt:  DTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLG-RPR---PPISYGRFRP

Query:  PAVYVGRMQPNRGAYIGNFGYQQP-VSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV-PGGHGYGAVHGYGMPSPQIVQ
            + R       Y+    + QP V  P+ Q    P  + A+  P   Y       Y    +A+     Y Q      P   GY    GYG    Q + 
Subjt:  PAVYVGRMQPNRGAYIGNFGYQQP-VSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTV-PGGHGYGAVHGYGMPSPQIVQ

Query:  FSGPNVNALTSS
         + P   A  ++
Subjt:  FSGPNVNALTSS

Q9I8B3 RNA-binding protein 24-B4.9e-2738.99Show/hide
Query:  DTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVY
        DTTYTK+FVGGL + T   ++R YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R   P   
Subjt:  DTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRPPISYGRFRPPAVY

Query:  VGRMQPNRGAYIGNFGYQQPVSYP---YQQGLAYP---PYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQ
         G  Q +       +G      YP    QQGL  P     + A+  P   Y       Y    +A+   Y Y       P   GY    GYG   PQ + 
Subjt:  VGRMQPNRGAYIGNFGYQQPVSYP---YQQGLAYP---PYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQ

Query:  FSGPNVNALTSSPMPTIQ
         + P   A  ++     Q
Subjt:  FSGPNVNALTSSPMPTIQ

Q9M1S3 Probable RNA-binding protein ARP17.5e-2838.13Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRPPI
        ++S  +N  FGDT  TKVFVGGLAW+T  + M  +F ++G+ILEAV+I+DK T RSKGYGFVTF+D ++A RAC D TPII+GRRANCNLASLG      
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRPPI

Query:  SYGRFR-PPAVYVGRMQPNRG-----AYIGNFG-YQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTF-YHYGQLGQTVPGGHGYGA
          GR R  P +   +  P  G      ++GN   +  P  +  QQ       +   YG    YP  Y+       + + TF    G +G T   G+ Y  
Subjt:  SYGRFR-PPAVYVGRMQPNRG-----AYIGNFG-YQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTF-YHYGQLGQTVPGGHGYGA

Query:  V--HGYGMPSPQIV---QFSGPNVNALTSSPMPTIQAPYP------SGIPAPVAAQP
        +       P PQ      + G  V    +SPM      YP       G P P  ++P
Subjt:  V--HGYGMPSPQIV---QFSGPNVNALTSSPMPTIQAPYP------SGIPAPVAAQP

Arabidopsis top hitse value%identityAlignment
AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein9.9e-8456.95Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGF--LNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIID
        MAY  IP          SSGF  LNSPFGDTT+TKVFVGGLAWETQS+T+R +F+Q+G+ILEAVVITDKNTGRSKGYGFVTF+DPE+ARRAC DPTPIID
Subjt:  MAYQHIPVPSSVSGSTSSSGF--LNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIID

Query:  GRRANCNLASLGRPRPPISY-------GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP-----------QQYLQIY
        GRRANCNLASLGR RPP+ Y       GR RPP+ YVG +Q  RG + G+  Y QP +Y YQQG+ Y PY    YGP+Y+Y            QQYLQ+Y
Subjt:  GRRANCNLASLGRPRPPISY-------GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP-----------QQYLQIY

Query:  GVPGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        GVPG+ +   Y YGQL  T+PG HGY A  GY  P   ++Q          +SPM  IQ+PYPS  P+    Q + +V +P Q++Q SGSDQT+G
Subjt:  GVPGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

AT1G20880.2 RNA-binding (RRM/RBD/RNP motifs) family protein9.9e-8456.95Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGF--LNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIID
        MAY  IP          SSGF  LNSPFGDTT+TKVFVGGLAWETQS+T+R +F+Q+G+ILEAVVITDKNTGRSKGYGFVTF+DPE+ARRAC DPTPIID
Subjt:  MAYQHIPVPSSVSGSTSSSGF--LNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIID

Query:  GRRANCNLASLGRPRPPISY-------GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP-----------QQYLQIY
        GRRANCNLASLGR RPP+ Y       GR RPP+ YVG +Q  RG + G+  Y QP +Y YQQG+ Y PY    YGP+Y+Y            QQYLQ+Y
Subjt:  GRRANCNLASLGRPRPPISY-------GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP-----------QQYLQIY

Query:  GVPGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        GVPG+ +   Y YGQL  T+PG HGY A  GY  P   ++Q          +SPM  IQ+PYPS  P+    Q + +V +P Q++Q SGSDQT+G
Subjt:  GVPGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.0e-4342.81Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRP--
        S++ +  SPFGDTT+TKVFVGGLAWET +D MR YF+QFGEILEAV+ITDK TG+SKGYGFVTF+D +SA RA +DP P+IDGR+ANCN+AS GRPRP  
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPRP--

Query:  PISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQ----------QYL--QIYGVPGSASPTF-------YHYGQ
        P   G+   P+ Y G      G      G   PV       L YP Y Y TY  EY Y Q          QY   Q+YG  G+ SP+        Y+Y Q
Subjt:  PISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQ----------QYL--QIYGVPGSASPTF-------YHYGQ

Query:  LGQTVPG-GHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIP---APVAAQPQFVVHSPSQFVQGSG
             P   H     + +     Q  Q   P+ ++    P   ++AP PS +P    P+++  +   H+P Q  +  G
Subjt:  LGQTVPG-GHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIP---APVAAQPQFVVHSPSQFVQGSG

AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.7e-9761.99Show/hide
Query:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR
        MAYQ  PVP       S   +LNSPFGDTT+TKVFVGGLAWETQS+T+R +FEQ+GEILEAVVI DKNTGRSKGYGFVTF+DPE+ARRAC+DPTPIIDGR
Subjt:  MAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGR

Query:  RANCNLASLGRPRPPISY-------GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP-----------QQYLQIYGV
        RANCNLASLGRPRPP+ Y       GR RP + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PY    YGPEY+Y            QQYLQ+YGV
Subjt:  RANCNLASLGRPRPPISY-------GRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYP-----------QQYLQIYGV

Query:  PGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTS
        PG+ +   Y YGQL QT+P GHGY AV GY +P   I+Q  GP V+ +T+S MP +QAPYPSGIP P   Q   +VHSP QF+Q + SDQT+
Subjt:  PGSASPTFYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTS

AT1G78260.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.7e-4345.24Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPR--P
        S + +  SPFGDTTYTKVFVGGLAWET +D MR YFEQFGEILEAV+ITDKNTG+SKGYGFVTF++ +SA RA +DP P+IDGR+ANCN+AS GRPR  P
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRANCNLASLGRPR--P

Query:  PISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYV---------------YPQQYLQIYG----VPGSA------SPT
        P   G+   P+ Y          Y G      P + P    L YP Y Y TY P+                 Y QQ  Q+YG     P S+      SP 
Subjt:  PISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYV---------------YPQQYLQIYG----VPGSA------SPT

Query:  FYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPN--VNALTSSPMPTIQ
        +Y Y      VP  H +     Y        +FS P+  V    SS  P +Q
Subjt:  FYHYGQLGQTVPGGHGYGAVHGYGMPSPQIVQFSGPN--VNALTSSPMPTIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAGCAAATTCTCAGCCCTTTCCTTCCCTCCTTGTGTTTTTCCTCCGCCGCCGCCTCCTCCCCCTCCCTCTCCTCTCCGCCGCCGCCGCCGCCTTCTCCTCCGTA
TCTCTCTATCAAACCCGCCTTCTTCCTACACTCCCTGGATCTCTCTCTCTCTCTCTCTCTGTTCCTGTCTGGCCCATCTCATCCCCCTTTCTTTCTCATTTTATTTCTAG
GGGGTTTGCTTCTGCTATGTGGGTTTCTCTCTAATTCCCCAATTCTCCACCACTTCATTGAATTCTACGTACCCTTTGTGTCTCTGTTTATATTGTATACTGGGTGTTCA
TTTCTTTGGATTTCTCCACTAATAATGGCTTATCAGCATATTCCGGTTCCTAGTTCCGTTTCTGGATCAACTTCCAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATAC
CACTTACACCAAGGTCTTCGTTGGTGGCTTGGCTTGGGAGACTCAGAGCGACACTATGAGGCACTACTTTGAGCAGTTTGGGGAGATTCTTGAAGCCGTTGTTATAACGG
ATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCAGGATCCAGAGTCAGCTAGAAGAGCTTGCTCAGATCCTACTCCAATTATTGATGGCAGGCGAGCC
AATTGTAATCTGGCTTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGACGTTTTAGACCGCCTGCAGTCTATGTTGGACGAATGCAACCCAACAGGGGAGCTTATAT
TGGAAATTTTGGCTACCAACAACCGGTTTCTTATCCTTATCAGCAGGGACTTGCATATCCTCCTTATAGTTATGCTACTTATGGACCTGAGTATGTCTACCCACAGCAAT
ACCTGCAGATTTATGGGGTGCCTGGGTCAGCAAGCCCTACTTTTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGATATGGAGCAGTACATGGATAT
GGAATGCCAAGTCCTCAGATCGTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACAATTCAGGCACCATATCCTTCAGGGATTCCAGCACC
TGTTGCAGCACAACCACAGTTTGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAGCAAATTCTCAGCCCTTTCCTTCCCTCCTTGTGTTTTTCCTCCGCCGCCGCCTCCTCCCCCTCCCTCTCCTCTCCGCCGCCGCCGCCGCCTTCTCCTCCGTA
TCTCTCTATCAAACCCGCCTTCTTCCTACACTCCCTGGATCTCTCTCTCTCTCTCTCTCTGTTCCTGTCTGGCCCATCTCATCCCCCTTTCTTTCTCATTTTATTTCTAG
GGGGTTTGCTTCTGCTATGTGGGTTTCTCTCTAATTCCCCAATTCTCCACCACTTCATTGAATTCTACGTACCCTTTGTGTCTCTGTTTATATTGTATACTGGGTGTTCA
TTTCTTTGGATTTCTCCACTAATAATGGCTTATCAGCATATTCCGGTTCCTAGTTCCGTTTCTGGATCAACTTCCAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATAC
CACTTACACCAAGGTCTTCGTTGGTGGCTTGGCTTGGGAGACTCAGAGCGACACTATGAGGCACTACTTTGAGCAGTTTGGGGAGATTCTTGAAGCCGTTGTTATAACGG
ATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCAGGATCCAGAGTCAGCTAGAAGAGCTTGCTCAGATCCTACTCCAATTATTGATGGCAGGCGAGCC
AATTGTAATCTGGCTTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGACGTTTTAGACCGCCTGCAGTCTATGTTGGACGAATGCAACCCAACAGGGGAGCTTATAT
TGGAAATTTTGGCTACCAACAACCGGTTTCTTATCCTTATCAGCAGGGACTTGCATATCCTCCTTATAGTTATGCTACTTATGGACCTGAGTATGTCTACCCACAGCAAT
ACCTGCAGATTTATGGGGTGCCTGGGTCAGCAAGCCCTACTTTTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGATATGGAGCAGTACATGGATAT
GGAATGCCAAGTCCTCAGATCGTGCAGTTTAGTGGTCCTAATGTTAATGCATTAACATCTTCTCCAATGCCTACAATTCAGGCACCATATCCTTCAGGGATTCCAGCACC
TGTTGCAGCACAACCACAGTTTGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGA
Protein sequenceShow/hide protein sequence
MKKQILSPFLPSLCFSSAAASSPSLSSPPPPPPSPPYLSIKPAFFLHSLDLSLSLSLFLSGPSHPPFFLILFLGGLLLLCGFLSNSPILHHFIEFYVPFVSLFILYTGCS
FLWISPLIMAYQHIPVPSSVSGSTSSSGFLNSPFGDTTYTKVFVGGLAWETQSDTMRHYFEQFGEILEAVVITDKNTGRSKGYGFVTFQDPESARRACSDPTPIIDGRRA
NCNLASLGRPRPPISYGRFRPPAVYVGRMQPNRGAYIGNFGYQQPVSYPYQQGLAYPPYSYATYGPEYVYPQQYLQIYGVPGSASPTFYHYGQLGQTVPGGHGYGAVHGY
GMPSPQIVQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG