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CmoCh12G006850 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G006850
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPMD domain-containing protein
Genome locationCmo_Chr12:4934273..4934758
RNA-Seq ExpressionCmoCh12G006850
SyntenyCmoCh12G006850
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8363055.1 hypothetical protein BUALT_BualtUnG0008900 [Buddleja alternifolia]1.5e-4881.6Show/hide
Query:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPA
        GRDESER+RAESQ IVAARPLC LQYPVAYLSRLQRILP A+WEL +KAA    P +GL QRHVPLGA  PLL VG +  G  VASSPDSDLEAFSHNPA
Subjt:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPA

Query:  HGSFAPLAFQPSAMTNCANQRFLSY
        HGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  HGSFAPLAFQPSAMTNCANQRFLSY

KAG8363060.1 hypothetical protein BUALT_BualtUnG0009600 [Buddleja alternifolia]1.5e-4881.6Show/hide
Query:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPA
        GRDESER+RAESQ IVAARPLC LQYPVAYLSRLQRILP A+WEL +KAA    P +GL QRHVPLGA  PLL VG +  G  VASSPDSDLEAFSHNPA
Subjt:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPA

Query:  HGSFAPLAFQPSAMTNCANQRFLSY
        HGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  HGSFAPLAFQPSAMTNCANQRFLSY

KAG8375836.1 hypothetical protein BUALT_Bualt09G0000500 [Buddleja alternifolia]2.0e-4880.31Show/hide
Query:  CVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHN
        C G DESER+RAESQ IVAARPLC LQYPVAYLSRLQRILP A+WEL +KAA    P +GL QRHVPLGA  PLL VG +  G  VASSPDSDLEAFSHN
Subjt:  CVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHN

Query:  PAHGSFAPLAFQPSAMTNCANQRFLSY
        PAHGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  PAHGSFAPLAFQPSAMTNCANQRFLSY

OPH47798.1 hypothetical protein B4U81_25600, partial [Vibrio campbellii]5.7e-4882.26Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPAH
        R  S RRRAESQ IVAARPLC LQYPVAYLSRLQRILP A+WEL + A     P  GL QRHVPLGA RPLLLVG +A GACVASSPDSDLEAFSHNPAH
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPAH

Query:  GSFAPLAFQPSAMTNCANQRFLSY
        GSFAPLAFQPSAMTNCANQRFLSY
Subjt:  GSFAPLAFQPSAMTNCANQRFLSY

TXG51762.1 hypothetical protein EZV62_024286 [Acer yangbiense]6.8e-4981.1Show/hide
Query:  VGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACV-ASSPDSDLEAFSHN
        +GRDESER RAESQWIVAARPLCHLQYPVAYLSRLQRILP A+WELR+KAA    P  GL QRHVPLG  R LL VG +A G     SSPDSDLEAFSHN
Subjt:  VGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACV-ASSPDSDLEAFSHN

Query:  PAHGSFAPLAFQPSAMTNCANQRFLSY
        PAHGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  PAHGSFAPLAFQPSAMTNCANQRFLSY

TrEMBL top hitse value%identityAlignment
A0A1Q3DGA9 Uncharacterized protein (Fragment)8.1e-4883.06Show/hide
Query:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPAH
        RDESER+RAESQ IVAAR LCHLQYPVAYLSRL+RILP A    R+KAA    PS+GL QRHVPLG  RPLLLVG +A GACVASSPDSDLEAFSHNPAH
Subjt:  RDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPAH

Query:  GSFAPLAFQPSAMTNCANQRFLSY
        GSFAPLAFQPSAMTNCANQRFLSY
Subjt:  GSFAPLAFQPSAMTNCANQRFLSY

A0A2G2UUV0 Uncharacterized protein1.4e-4775Show/hide
Query:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAE-----------RPLLLVGNQAMGACVASSPD
        GRD+ ER+RAESQWIVAARPLCHLQYPVAYLSRLQRILP A+W+L +KAA  T   + LSQ+HVPLGAE           RPLL VG +  GACVASSPD
Subjt:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAE-----------RPLLLVGNQAMGACVASSPD

Query:  SDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
        SDLEAFSHNPAHGSFAPLAFQPSAMTN  NQRFLSY
Subjt:  SDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY

A0A2N9I9C2 Uncharacterized protein2.0e-4680.34Show/hide
Query:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPA
        G DES+R RAESQWIVAARPLCHLQYPVAYLSRLQRILP+ +WEL +KAA    P +GL QRHVP GA RPLL VGN+A G  +ASSPDSDLEAFSHNPA
Subjt:  GRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEAFSHNPA

Query:  HGSFAPLAFQPSAMTNC
        HGSFAPLAFQPSAMTNC
Subjt:  HGSFAPLAFQPSAMTNC

A0A445H9X1 Uncharacterized protein2.3e-4774.81Show/hide
Query:  KFVYCVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEA
        KF   +G    +  RAESQWIVAARPLCHLQYPVAYLSRLQRILP A+WELR+KA+   +P     QRHVPLG   PLLLVG +  GA VASSPDSDLEA
Subjt:  KFVYCVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACVASSPDSDLEA

Query:  FSHNPAHGSFAPLAFQPSAMTNCANQRFLSY
        FSHNP HGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  FSHNPAHGSFAPLAFQPSAMTNCANQRFLSY

A0A5C7H5R6 Uncharacterized protein3.3e-4981.1Show/hide
Query:  VGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACV-ASSPDSDLEAFSHN
        +GRDESER RAESQWIVAARPLCHLQYPVAYLSRLQRILP A+WELR+KAA    P  GL QRHVPLG  R LL VG +A G     SSPDSDLEAFSHN
Subjt:  VGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLLVGNQAMGACV-ASSPDSDLEAFSHN

Query:  PAHGSFAPLAFQPSAMTNCANQRFLSY
        PAHGSFAPLAFQPSAMTNCANQRFLSY
Subjt:  PAHGSFAPLAFQPSAMTNCANQRFLSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTTGCATTGGAGCACGTTCAATCATCAACACTTAACATGTAGAATCGTTACTTTTCCTATAACCTCCTTGACTCTTGAAAGAAATAAATTTGTTTATTGTGTGGG
GAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTC
TACCCATCGCTCAGTGGGAATTACGTTACAAGGCGGCCCTTGAGACTCATCCGTCACAAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCGAAAGGCCCCTACTGCTG
GTCGGCAATCAAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACC
AAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCTTGCATTGGAGCACGTTCAATCATCAACACTTAACATGTAGAATCGTTACTTTTCCTATAACCTCCTTGACTCTTGAAAGAAATAAATTTGTTTATTGTGTGGG
GAGGGACGAATCGGAGCGACGAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCTGTCGCATATTTAAGTCGTCTGCAAAGGATTC
TACCCATCGCTCAGTGGGAATTACGTTACAAGGCGGCCCTTGAGACTCATCCGTCACAAGGGCTTAGCCAACGACACGTGCCTTTGGGGGCCGAAAGGCCCCTACTGCTG
GTCGGCAATCAAGCGATGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCCAGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACC
AAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAG
Protein sequenceShow/hide protein sequence
MALHWSTFNHQHLTCRIVTFPITSLTLERNKFVYCVGRDESERRRAESQWIVAARPLCHLQYPVAYLSRLQRILPIAQWELRYKAALETHPSQGLSQRHVPLGAERPLLL
VGNQAMGACVASSPDSDLEAFSHNPAHGSFAPLAFQPSAMTNCANQRFLSY