CuGenDBv2

Gene ID	CmoCh12G006910
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Genome location	Cmo_Chr12:5112793..5122123
RNA-Seq Expression	CmoCh12G006910
Synteny	CmoCh12G006910
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016740 - transferase activity (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR001584 - Integrase, catalytic core IPR001878 - Zinc finger, CCHC-type IPR005162 - Retrotransposon gag domain IPR012337 - Ribonuclease H-like superfamily IPR021109 - Aspartic peptidase domain superfamily IPR036397 - Ribonuclease H superfamily IPR041373 - Reverse transcriptase, RNase H-like domain IPR041588 - Integrase zinc-binding domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025998.1 pol protein [Cucumis melo var. makuwa]

0.0e+00

52.54

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Query:  PEAAPPAGGVDAN-----TKLMSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQ
        PEA P A  VD N       L +  Q     L  AL    A  Q QA A V A+A AP  P    P P++       +RDFK+Y+P+ F GS+ +P + Q
Subjt:  PEAAPPAGGVDAN-----TKLMSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQ

Query:  MWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFA
        MW+ ++ET F+ M+C E+QKV CA F L+     WW   + +L  +   + WE+FKE F  +++  + +  K QEF +L QG +T E+Y+ EF+ L RFA
Subjt:  MWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFA

Query:  PSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRP
        P MV  E   TEKFV GL   ++ ++ A  P T+ +ALR A  L  P+                K++ E Q  I  +R   SGG        RHR     
Subjt:  PSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRP

Query:  APRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPR-AQARAYASTSKD
        A R     P                     CT CGR+H GRC+AGS  C+RC Q GH A  C           PR   +T  P P    Q R +A+T ++
Subjt:  APRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPR-AQARAYASTSKD

Query:  TRRSDAVVT--------------------------------------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWL
          R+  VVT                                            + P+G  L+S+ ++K  +V I N+ L V L+V++M DFDVILGMDWL
Subjt:  TRRSDAVVT--------------------------------------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWL

Query:  AENRASIDCCKKEVKFSPPTGPTFKFKG------------------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIEL
        + N A+IDC  KEV F+PP+G +FKF+G                               +VR  E +  + P+V ++PDVFPD+LP +PP R VD+ IEL
Subjt:  AENRASIDCCKKEVKFSPPTGPTFKFKG------------------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIEL

Query:  KPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSG
        +PGT PIS+APYRM PAELKELK QLQ+LL+KGFIRPSVSPWG PVLF++KKDGSMRLCIDYRELNK T+KN Y L RI+DLFDQL+ ATVFSKIDLRSG
Subjt:  KPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSG

Query:  YHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLR
        YHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNAPAV M+LMN VFK+ LD F+IVFIDDI+IYS+T+ EHEEHL +VL TLR +KLYAKFSKCEF LR
Subjt:  YHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLR

Query:  QVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR--------------------------------------LVTAPVLIVPESSE
        +V+FLGHVVS +G+SVDP K+EA+T W RP+ V+E+RSFLGL GY RR                                      LVTAPVL VP+ S 
Subjt:  QVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR--------------------------------------LVTAPVLIVPESSE

Query:  GYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ--------------------------
         +VIYSDAS KGLGCVLMQ GKVVAYA+ QLK +E+NYPTHDLELAAVVFALKIWR YLYGEK QI+TDHK+++                          
Subjt:  GYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ--------------------------

Query:  -YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQ
         YHPGK N+VADAL RK  HS ALIT++  + R+FERA IAV+   V  QLA+LTVQPTLRQKII +Q +DP L +    ++    +GF  SSD+GL+++
Subjt:  -YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQ

Query:  GRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPK
        GRLCVP    ++ E+L EAH+SPF MHP  TKMYQDL+  +WW+ MKRDVA FVS+CLVCQQVKAPRQ  AGLLQPLS+P WKWE+++MDFI GLPKT K
Subjt:  GRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPK

Query:  GYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRAC
        GYTVIWVVVDRLTKSAHF+PG  TYT   W QLY+ +IVRLHGVPVSIVSDRD RFT  FW GLQ ALGTRL+FSTAFHPQT+ QTERLNQIL+DMLRAC
Subjt:  GYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRAC

Query:  VLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK
        VL F GSWDS LHLMEF+YNNS+QATIGMAPFEALYGK
Subjt:  VLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK

KAA0031437.1 pol protein [Cucumis melo var. makuwa]

0.0e+00

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Query:  AQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNK
        A AQAQA A V A+A  P  P    P P++       +RDF++Y+P+ F GS+ +P + QMW+ ++ET F  M+C E+QKV CA F L+     WW   +
Subjt:  AQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNK

Query:  TLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRT
         +L  +   + WE+FKE F  +++  + +  K QEF +L QG +T E+Y+ EF+ L RFAP MV  E   TEKFV GL   ++ ++ A  P T+ +ALR 
Subjt:  TLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRT

Query:  AKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSG
        A  L  P+                K++ E Q  +  +R   SGG        RHR     A R     P                     CT CGR+H G
Subjt:  AKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSG

Query:  RCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDAVVT-------------------------------
        RC+AGS  C+RC Q GH A  C           PR   +T  P P  A Q R +A+T ++  R+  VVT                               
Subjt:  RCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDAVVT-------------------------------

Query:  -------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKG------------
                     + P+G  L+S+ ++K  +V I N+ L V L+V++M DFDVILGMDWL+ N A+IDC  KEV F+PP+  +FKF+G            
Subjt:  -------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKG------------

Query:  ------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVS
                           +VR  E +  + P+V ++PDVFPD+LP +PP R VD+ IEL+PGT PIS+APYRM PAELKELK QLQ+LL+KGFIRPSVS
Subjt:  ------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVS

Query:  PWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLM
        PWG PVLF++KKDGSMRLCIDYRELNK T+KN Y L RI+DLFDQL+ ATVFSKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNAPAV M
Subjt:  PWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLM

Query:  ELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFL
        +LMN VFKE LD F+IVFIDDI+IYS+T+ EHEEHL +VL TLR +KLYAKFSKCEF LR+V+FLGHVVS +G+SVDP K+EA+T W RP+ V+E+RSFL
Subjt:  ELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFL

Query:  GLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPT
        GL GY RR                                      LVTAPVL VP+ S  +VIYSDAS KGLGCVLMQ GKVVAYA+ QLK +E+NYPT
Subjt:  GLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPT

Query:  HDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANI
        HDLELAAVVFALKIWR YLYGEK QI+TDHK+++                           YHPGK N+VADAL RK  HS ALIT++  + R+FERA I
Subjt:  HDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANI

Query:  AVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQH
        AV+   V  QLA+LTVQPTLRQKII +Q +DP L +    ++    +GF  SSD+GL+++GRLCVP    ++ E+L EAH+SPF MHP  TKMYQDL+  
Subjt:  AVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQH

Query:  FWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVR
        +WW+ MKRDVA FVS+CLVCQQVKAPRQ  AGLLQPLS+P WKWE+++MDFI GLPKT +GYTVIWVVVDRLTKSAHF+PG  TYT   W QLY+ +IVR
Subjt:  FWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVR

Query:  LHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK
        LHGVPVSI+SDRD RFT  FW GLQ ALGTRL+FSTAFHPQT+ QTERLNQIL+DMLRACVL F GSWDS LHLMEF+YNNS+QATIGMAPFEALYGK
Subjt:  LHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK

KAA0066264.1 pol protein [Cucumis melo var. makuwa]

0.0e+00

53.22

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Query:  PEAAPPAGGVDAN-----TKLMSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQ
        PEA P A  VD N       L +  Q     L  AL    A  Q QA A V A+A AP  P    P P++       +RDF++Y+P+ F GS+ +P + Q
Subjt:  PEAAPPAGGVDAN-----TKLMSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQ

Query:  MWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFA
        MW+ ++ET F  M+C E+QKV CA F L+     WW   + +L  +   + WE+FKE F  +++  + +  K Q+F +L QG +T E+Y+ EF+ L  FA
Subjt:  MWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFA

Query:  PSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPK---DKKRCEEQVIIGQKRPHESGGFDRPP---PAHRHRSNNRPAPRWDERRP
        P MV  E   TEKFV GL   ++ ++ A  P T+ +ALR A  L  P+     K       +GQK     G  +  P   P    RS             
Subjt:  PSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPK---DKKRCEEQVIIGQKRPHESGGFDRPP---PAHRHRSNNRPAPRWDERRP

Query:  PRRTDRNPRNQDGARGR--RE-EGCTICGRLHSGRCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDA
             +  R +  A GR  RE   CT C R+H GRC+AGS  C+RC Q GH A  C           PR   +T  P P  + Q R +A+T +D  R+  
Subjt:  PRRTDRNPRNQDGARGR--RE-EGCTICGRLHSGRCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDA

Query:  VVT--------------------------------------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRAS
        VVT                                            + P+G  L+S+ ++K  +V I N+ L V L V++M DFDVILGMDWL+ N A+
Subjt:  VVT--------------------------------------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRAS

Query:  IDCCKKEVKFSPPTGPTFKFKGT----NVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNK
        IDC  KEV F+PP+G +FKF+G     ++R  E +  + P+V ++PDVFPD+LP +PP R VD+ IEL+PGT PIS+APYRM PAELKELK QLQ+LL+K
Subjt:  IDCCKKEVKFSPPTGPTFKFKGT----NVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNK

Query:  GFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGL
        GFIRPSVSPWG PVLF++KKDGSMRLCIDYRELNK T+KN Y L RI+DLFDQL+ ATVFSKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGL
Subjt:  GFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGL

Query:  TNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTR
        TNAPAV M+LMN VFK+ LD+F+IVFIDDI+IYS+T+ EHEEHL +VL TLR +KLYAKFSKCEF LR+V+FLGHVVS +G+SVDP K+EA+T W RP+ 
Subjt:  TNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTR

Query:  VTEVRSFLGLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLK
        V+E+RSFLGL GY RR                                      LVTAPVL VP+ S  +VIYSDAS KGL CVLMQ GKVVAYA+ QLK
Subjt:  VTEVRSFLGLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLK

Query:  EYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQ
         +E+NYPTHDLELAAVVFALKIWR YLYGEK QI+TDHK+++                           YHPGK N+VADAL RK  HS ALIT++  + 
Subjt:  EYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQ

Query:  REFERANIAVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTK
        R+FERA IAV+   V  +LA+L+VQPTLRQKII +Q  DP L +    ++    + F  SSD+GL+++GRLCVP    ++ E+L EAH+SPF MHP  TK
Subjt:  REFERANIAVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTK

Query:  MYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQ
        MYQDL+  +WW+ MKR+VA FVS+CLVCQQVKAPRQ  AGLLQPLS+P WKWEN++MDFI GLPKT KGYTVIWVVVDRLTKSAHF+PG  TYT   W Q
Subjt:  MYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQ

Query:  LYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPF
        LY+ +IVRLHGVPVSI+SDRD RFT  FW GLQ ALGTRL+FSTAFHPQT+ QTERLNQIL+DMLRACVL F  SWDS LHLMEFSYNNS+QATIGMAPF
Subjt:  LYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPF

Query:  EALYGK
        EALYGK
Subjt:  EALYGK

TYK06888.1 pol protein [Cucumis melo var. makuwa]

0.0e+00

53.08

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Query:  AQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNK
        A AQAQA A V A+A  P  P    P P++       +RDF++Y+P+ F GS+ +P + QMW+ ++ET F  M+C E+QKV CA F L+     WW   +
Subjt:  AQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNK

Query:  TLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRT
         +L  +   + WE+FKE F  +++  + +  K QEF +L QG +T E+Y+ EF+ L RFAP MV  E   TEKFV GL   ++ ++ A  P T+ +ALR 
Subjt:  TLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRT

Query:  AKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSG
        A  L  P+                K++ E Q  +  +R   SGG        RHR     A R     P                     CT CGR+H G
Subjt:  AKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSG

Query:  RCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDAVVT-------------------------------
        RC+AGS  C+RC Q GH A  C           PR   +T  P P  A Q R +A+T ++  R+  VVT                               
Subjt:  RCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDAVVT-------------------------------

Query:  -------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKG------------
                     + P+G  L+S+ ++K  +V I N+ L V L+V++M DFDVILGMDWL+ N A+IDC  KEV F+PP+  +FKF+G            
Subjt:  -------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKG------------

Query:  ------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVS
                           +VR  E +  + P+V ++PDVFPD+LP +PP R VD+ IEL+PGT PIS+APYRM PAELKELK QLQ+LL+KGFIRPSVS
Subjt:  ------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVS

Query:  PWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLM
        PWG PVLF++KKDGSMRLCIDYRELNK T+KN Y L RI+DLFDQL+ ATVFSKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNAPAV M
Subjt:  PWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLM

Query:  ELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFL
        +LMN VFK+ LD F+IVFIDDI+IYS+T+ EHEEHL +VL TLR +KLYAKFSKCEF LR+V+FLGHVVS +G+SVDP K+EA+T W RP+ V+E+RSFL
Subjt:  ELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFL

Query:  GLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPT
        GL GY RR                                      LVTAPVL VP+ S  +VIYSDAS KGLGCVLMQ GKVVAYA+ QLK +E+NYPT
Subjt:  GLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPT

Query:  HDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANI
        HDLELAAVVFALKIWR YLYGEK QI+TDHK+++                           YHPGK N+VADAL RK  HS ALIT++  + R+FERA I
Subjt:  HDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANI

Query:  AVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQH
        AV+   V  QLA+LTVQPTLRQKII +Q +DP L +    ++    +GF  SSD+GL+++GRLCVP    ++ E+L EAH+SPF MHP  TKMYQDL+  
Subjt:  AVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQH

Query:  FWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVR
        +WW+ MKRDVA FVS+CLVCQQVKAPRQ  AGLLQPLS+P WKWE+++MDFI GLPKT KGYTVIWVVVDRLTKSAHF+PG  TYT   W QLY+ +IVR
Subjt:  FWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVR

Query:  LHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK
        LHGVPVSIVSDRD RFT  FW GLQ ALGTRL+FSTAFHPQT+ QTERLNQIL+DMLRACVL F GSWDS LHLMEF+YNNS+QATIGMAPFEALYGK
Subjt:  LHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK

XP_022933231.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111440131 [Cucurbita moschata]

0.0e+00

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Query:  MSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNPPQPIRCLNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVL
        M+   A A A   A       A A A   V+A A  PVN P P R  NW++DF+RY+PRPF GS  DP   QMWIA +ETTFE+M C +  KV CAT+VL
Subjt:  MSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNPPQPIRCLNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVL

Query:  QKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEA
        QKDAE+WW DNK  +NP GG   WE FKEAFLK YYPK  R+KKQQEF  L QG  T ++Y+++F RL+RFAPS+ DTEEK TEKFVLGL P+ RRMLEA
Subjt:  QKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEA

Query:  FNPKTYEEALRTAKALEKPKDKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCM
        FNPKTYEEALRTAKALE+P ++K+ E  V IG+KRP E    +  PP+ R R  +RP        PP      P  +  A    +  C  CG+ H GRC+
Subjt:  FNPKTYEEALRTAKALEKPKDKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCM

Query:  AGSRACYRCGQEGHIAVNCTAENAAAQANQ---PRVVEQTDQPAPPRAQARAYASTSKDTRRSDAVVT--------------------------------
        AGS  CY CG  GH+A  C  ++          P + E T Q +P   Q +AY +TS +   S  VVT                                
Subjt:  AGSRACYRCGQEGHIAVNCTAENAAAQANQ---PRVVEQTDQPAPPRAQARAYASTSKDTRRSDAVVT--------------------------------

Query:  ------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKGT------------
                      PAGVDLV++ RV+DGQV+I  QT+ VDL VV+MTDFDVILGMDWLAEN A+IDC KKEV F+PP G TFKFKGT            
Subjt:  ------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKGT------------

Query:  ------------------NVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSP
                          N +GKEK    +P+VN+F DVFP+DLP IPPSR VD+ I+L+ GT PISKAPYRM PAELKELK QLQDLL+          
Subjt:  ------------------NVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSP

Query:  WGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLME
                  KD SMRLCI YRELNKRT+KN Y L RIEDLFDQLR ATVFSKIDLRSGYHQI+I  +D+PKTAFRTRYGHYEFVVMSFGLTNAPAV ME
Subjt:  WGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLME

Query:  LMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLG
        LMN VFKECLD+F+IVFIDDI+IYS+TDL+H+EHLRK LT LRE+KLYA F+KCEF + QVSFLGH+VSKDGI VDP K+EA+TK +RPT VTE+RSFLG
Subjt:  LMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLG

Query:  LGGYCR--------------------------------------RLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPTH
        L GY R                                      RLV+APVL VPESS GY IYSDAS KGLGCVLMQHGKVVAYA+ QLK+YEKNYPTH
Subjt:  LGGYCR--------------------------------------RLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPTH

Query:  DLELAAVVFALKIWRRYLYGEKTQIFTDH-----------------------------------------------------------------------
        DLELAAVVFALKIWR Y YGEKTQI+TDH                                                                       
Subjt:  DLELAAVVFALKIWRRYLYGEKTQIFTDH-----------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------KNIQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQ
                                     K+IQYHPGK N+V DAL RKTVHS ALITREVRVQREFERANIAVAT+GVI QLARLTVQPTLRQ+II SQ
Subjt:  -----------------------------KNIQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQ

Query:  REDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQ
        REDPNLQKVLGQLD+SPVDGF KSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHP GTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQ+VKAPRQ
Subjt:  REDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQ

Query:  KAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKAL
        K AGLLQPLSIP+WKWENI MDFI GLPKTPKGYTVIWVVVDRLTKSAHFLPG VTYTVDNWAQLYVK+IVRLHGV VSIVSDRDPRFTLAFW GLQKAL
Subjt:  KAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKAL

Query:  GTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK
        GTRL+FSTAFHPQ + QTERLNQIL+DMLRACVL+FK SWDSKLHLMEFSYNNSFQATIGMAPFEALYGK
Subjt:  GTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SIJ5 Reverse transcriptase

0.0e+00

52.54

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Query:  PEAAPPAGGVDAN-----TKLMSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQ
        PEA P A  VD N       L +  Q     L  AL    A  Q QA A V A+A AP  P    P P++       +RDFK+Y+P+ F GS+ +P + Q
Subjt:  PEAAPPAGGVDAN-----TKLMSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQ

Query:  MWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFA
        MW+ ++ET F+ M+C E+QKV CA F L+     WW   + +L  +   + WE+FKE F  +++  + +  K QEF +L QG +T E+Y+ EF+ L RFA
Subjt:  MWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFA

Query:  PSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRP
        P MV  E   TEKFV GL   ++ ++ A  P T+ +ALR A  L  P+                K++ E Q  I  +R   SGG        RHR     
Subjt:  PSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRP

Query:  APRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPR-AQARAYASTSKD
        A R     P                     CT CGR+H GRC+AGS  C+RC Q GH A  C           PR   +T  P P    Q R +A+T ++
Subjt:  APRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPR-AQARAYASTSKD

Query:  TRRSDAVVT--------------------------------------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWL
          R+  VVT                                            + P+G  L+S+ ++K  +V I N+ L V L+V++M DFDVILGMDWL
Subjt:  TRRSDAVVT--------------------------------------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWL

Query:  AENRASIDCCKKEVKFSPPTGPTFKFKG------------------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIEL
        + N A+IDC  KEV F+PP+G +FKF+G                               +VR  E +  + P+V ++PDVFPD+LP +PP R VD+ IEL
Subjt:  AENRASIDCCKKEVKFSPPTGPTFKFKG------------------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIEL

Query:  KPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSG
        +PGT PIS+APYRM PAELKELK QLQ+LL+KGFIRPSVSPWG PVLF++KKDGSMRLCIDYRELNK T+KN Y L RI+DLFDQL+ ATVFSKIDLRSG
Subjt:  KPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSG

Query:  YHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLR
        YHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNAPAV M+LMN VFK+ LD F+IVFIDDI+IYS+T+ EHEEHL +VL TLR +KLYAKFSKCEF LR
Subjt:  YHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLR

Query:  QVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR--------------------------------------LVTAPVLIVPESSE
        +V+FLGHVVS +G+SVDP K+EA+T W RP+ V+E+RSFLGL GY RR                                      LVTAPVL VP+ S 
Subjt:  QVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR--------------------------------------LVTAPVLIVPESSE

Query:  GYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ--------------------------
         +VIYSDAS KGLGCVLMQ GKVVAYA+ QLK +E+NYPTHDLELAAVVFALKIWR YLYGEK QI+TDHK+++                          
Subjt:  GYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ--------------------------

Query:  -YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQ
         YHPGK N+VADAL RK  HS ALIT++  + R+FERA IAV+   V  QLA+LTVQPTLRQKII +Q +DP L +    ++    +GF  SSD+GL+++
Subjt:  -YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQ

Query:  GRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPK
        GRLCVP    ++ E+L EAH+SPF MHP  TKMYQDL+  +WW+ MKRDVA FVS+CLVCQQVKAPRQ  AGLLQPLS+P WKWE+++MDFI GLPKT K
Subjt:  GRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPK

Query:  GYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRAC
        GYTVIWVVVDRLTKSAHF+PG  TYT   W QLY+ +IVRLHGVPVSIVSDRD RFT  FW GLQ ALGTRL+FSTAFHPQT+ QTERLNQIL+DMLRAC
Subjt:  GYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRAC

Query:  VLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK
        VL F GSWDS LHLMEF+YNNS+QATIGMAPFEALYGK
Subjt:  VLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK

A0A5A7SPM4 Reverse transcriptase

0.0e+00

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Query:  AQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNK
        A AQAQA A V A+A  P  P    P P++       +RDF++Y+P+ F GS+ +P + QMW+ ++ET F  M+C E+QKV CA F L+     WW   +
Subjt:  AQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNK

Query:  TLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRT
         +L  +   + WE+FKE F  +++  + +  K QEF +L QG +T E+Y+ EF+ L RFAP MV  E   TEKFV GL   ++ ++ A  P T+ +ALR 
Subjt:  TLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRT

Query:  AKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSG
        A  L  P+                K++ E Q  +  +R   SGG        RHR     A R     P                     CT CGR+H G
Subjt:  AKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSG

Query:  RCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDAVVT-------------------------------
        RC+AGS  C+RC Q GH A  C           PR   +T  P P  A Q R +A+T ++  R+  VVT                               
Subjt:  RCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDAVVT-------------------------------

Query:  -------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKG------------
                     + P+G  L+S+ ++K  +V I N+ L V L+V++M DFDVILGMDWL+ N A+IDC  KEV F+PP+  +FKF+G            
Subjt:  -------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKG------------

Query:  ------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVS
                           +VR  E +  + P+V ++PDVFPD+LP +PP R VD+ IEL+PGT PIS+APYRM PAELKELK QLQ+LL+KGFIRPSVS
Subjt:  ------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVS

Query:  PWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLM
        PWG PVLF++KKDGSMRLCIDYRELNK T+KN Y L RI+DLFDQL+ ATVFSKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNAPAV M
Subjt:  PWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLM

Query:  ELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFL
        +LMN VFKE LD F+IVFIDDI+IYS+T+ EHEEHL +VL TLR +KLYAKFSKCEF LR+V+FLGHVVS +G+SVDP K+EA+T W RP+ V+E+RSFL
Subjt:  ELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFL

Query:  GLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPT
        GL GY RR                                      LVTAPVL VP+ S  +VIYSDAS KGLGCVLMQ GKVVAYA+ QLK +E+NYPT
Subjt:  GLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPT

Query:  HDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANI
        HDLELAAVVFALKIWR YLYGEK QI+TDHK+++                           YHPGK N+VADAL RK  HS ALIT++  + R+FERA I
Subjt:  HDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANI

Query:  AVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQH
        AV+   V  QLA+LTVQPTLRQKII +Q +DP L +    ++    +GF  SSD+GL+++GRLCVP    ++ E+L EAH+SPF MHP  TKMYQDL+  
Subjt:  AVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQH

Query:  FWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVR
        +WW+ MKRDVA FVS+CLVCQQVKAPRQ  AGLLQPLS+P WKWE+++MDFI GLPKT +GYTVIWVVVDRLTKSAHF+PG  TYT   W QLY+ +IVR
Subjt:  FWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVR

Query:  LHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK
        LHGVPVSI+SDRD RFT  FW GLQ ALGTRL+FSTAFHPQT+ QTERLNQIL+DMLRACVL F GSWDS LHLMEF+YNNS+QATIGMAPFEALYGK
Subjt:  LHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK

A0A5A7VG30 Reverse transcriptase

0.0e+00

53.22

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Query:  PEAAPPAGGVDAN-----TKLMSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQ
        PEA P A  VD N       L +  Q     L  AL    A  Q QA A V A+A AP  P    P P++       +RDF++Y+P+ F GS+ +P + Q
Subjt:  PEAAPPAGGVDAN-----TKLMSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQ

Query:  MWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFA
        MW+ ++ET F  M+C E+QKV CA F L+     WW   + +L  +   + WE+FKE F  +++  + +  K Q+F +L QG +T E+Y+ EF+ L  FA
Subjt:  MWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFA

Query:  PSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPK---DKKRCEEQVIIGQKRPHESGGFDRPP---PAHRHRSNNRPAPRWDERRP
        P MV  E   TEKFV GL   ++ ++ A  P T+ +ALR A  L  P+     K       +GQK     G  +  P   P    RS             
Subjt:  PSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPK---DKKRCEEQVIIGQKRPHESGGFDRPP---PAHRHRSNNRPAPRWDERRP

Query:  PRRTDRNPRNQDGARGR--RE-EGCTICGRLHSGRCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDA
             +  R +  A GR  RE   CT C R+H GRC+AGS  C+RC Q GH A  C           PR   +T  P P  + Q R +A+T +D  R+  
Subjt:  PRRTDRNPRNQDGARGR--RE-EGCTICGRLHSGRCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDA

Query:  VVT--------------------------------------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRAS
        VVT                                            + P+G  L+S+ ++K  +V I N+ L V L V++M DFDVILGMDWL+ N A+
Subjt:  VVT--------------------------------------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRAS

Query:  IDCCKKEVKFSPPTGPTFKFKGT----NVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNK
        IDC  KEV F+PP+G +FKF+G     ++R  E +  + P+V ++PDVFPD+LP +PP R VD+ IEL+PGT PIS+APYRM PAELKELK QLQ+LL+K
Subjt:  IDCCKKEVKFSPPTGPTFKFKGT----NVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNK

Query:  GFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGL
        GFIRPSVSPWG PVLF++KKDGSMRLCIDYRELNK T+KN Y L RI+DLFDQL+ ATVFSKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGL
Subjt:  GFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGL

Query:  TNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTR
        TNAPAV M+LMN VFK+ LD+F+IVFIDDI+IYS+T+ EHEEHL +VL TLR +KLYAKFSKCEF LR+V+FLGHVVS +G+SVDP K+EA+T W RP+ 
Subjt:  TNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTR

Query:  VTEVRSFLGLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLK
        V+E+RSFLGL GY RR                                      LVTAPVL VP+ S  +VIYSDAS KGL CVLMQ GKVVAYA+ QLK
Subjt:  VTEVRSFLGLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLK

Query:  EYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQ
         +E+NYPTHDLELAAVVFALKIWR YLYGEK QI+TDHK+++                           YHPGK N+VADAL RK  HS ALIT++  + 
Subjt:  EYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQ

Query:  REFERANIAVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTK
        R+FERA IAV+   V  +LA+L+VQPTLRQKII +Q  DP L +    ++    + F  SSD+GL+++GRLCVP    ++ E+L EAH+SPF MHP  TK
Subjt:  REFERANIAVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTK

Query:  MYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQ
        MYQDL+  +WW+ MKR+VA FVS+CLVCQQVKAPRQ  AGLLQPLS+P WKWEN++MDFI GLPKT KGYTVIWVVVDRLTKSAHF+PG  TYT   W Q
Subjt:  MYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQ

Query:  LYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPF
        LY+ +IVRLHGVPVSI+SDRD RFT  FW GLQ ALGTRL+FSTAFHPQT+ QTERLNQIL+DMLRACVL F  SWDS LHLMEFSYNNS+QATIGMAPF
Subjt:  LYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPF

Query:  EALYGK
        EALYGK
Subjt:  EALYGK

A0A5D3C6W3 Reverse transcriptase

0.0e+00

53.08

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Query:  AQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNK
        A AQAQA A V A+A  P  P    P P++       +RDF++Y+P+ F GS+ +P + QMW+ ++ET F  M+C E+QKV CA F L+     WW   +
Subjt:  AQAQAQAQAQVNARANAPVNP----PQPIRC---LNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNK

Query:  TLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRT
         +L  +   + WE+FKE F  +++  + +  K QEF +L QG +T E+Y+ EF+ L RFAP MV  E   TEKFV GL   ++ ++ A  P T+ +ALR 
Subjt:  TLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRT

Query:  AKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSG
        A  L  P+                K++ E Q  +  +R   SGG        RHR     A R     P                     CT CGR+H G
Subjt:  AKALEKPK---------------DKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSG

Query:  RCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDAVVT-------------------------------
        RC+AGS  C+RC Q GH A  C           PR   +T  P P  A Q R +A+T ++  R+  VVT                               
Subjt:  RCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA-QARAYASTSKDTRRSDAVVT-------------------------------

Query:  -------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKG------------
                     + P+G  L+S+ ++K  +V I N+ L V L+V++M DFDVILGMDWL+ N A+IDC  KEV F+PP+  +FKF+G            
Subjt:  -------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKG------------

Query:  ------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVS
                           +VR  E +  + P+V ++PDVFPD+LP +PP R VD+ IEL+PGT PIS+APYRM PAELKELK QLQ+LL+KGFIRPSVS
Subjt:  ------------------TNVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVS

Query:  PWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLM
        PWG PVLF++KKDGSMRLCIDYRELNK T+KN Y L RI+DLFDQL+ ATVFSKIDLRSGYHQ+RI + D+PKTAFR+RYGHYEFVVMSFGLTNAPAV M
Subjt:  PWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLM

Query:  ELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFL
        +LMN VFK+ LD F+IVFIDDI+IYS+T+ EHEEHL +VL TLR +KLYAKFSKCEF LR+V+FLGHVVS +G+SVDP K+EA+T W RP+ V+E+RSFL
Subjt:  ELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFL

Query:  GLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPT
        GL GY RR                                      LVTAPVL VP+ S  +VIYSDAS KGLGCVLMQ GKVVAYA+ QLK +E+NYPT
Subjt:  GLGGYCRR--------------------------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPT

Query:  HDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANI
        HDLELAAVVFALKIWR YLYGEK QI+TDHK+++                           YHPGK N+VADAL RK  HS ALIT++  + R+FERA I
Subjt:  HDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQ---------------------------YHPGKTNMVADALGRKTVHSLALITREVRVQREFERANI

Query:  AVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQH
        AV+   V  QLA+LTVQPTLRQKII +Q +DP L +    ++    +GF  SSD+GL+++GRLCVP    ++ E+L EAH+SPF MHP  TKMYQDL+  
Subjt:  AVATEGVITQLARLTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQH

Query:  FWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVR
        +WW+ MKRDVA FVS+CLVCQQVKAPRQ  AGLLQPLS+P WKWE+++MDFI GLPKT KGYTVIWVVVDRLTKSAHF+PG  TYT   W QLY+ +IVR
Subjt:  FWWKSMKRDVAGFVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVR

Query:  LHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK
        LHGVPVSIVSDRD RFT  FW GLQ ALGTRL+FSTAFHPQT+ QTERLNQIL+DMLRACVL F GSWDS LHLMEF+YNNS+QATIGMAPFEALYGK
Subjt:  LHGVPVSIVSDRDPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK

A0A6J1EYH9 Reverse transcriptase

0.0e+00

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Query:  MSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNPPQPIRCLNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVL
        M+   A A A   A       A A A   V+A A  PVN P P R  NW++DF+RY+PRPF GS  DP   QMWIA +ETTFE+M C +  KV CAT+VL
Subjt:  MSQAQAQAQALALALVQVQAQAQAQAQAQVNARANAPVNPPQPIRCLNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVL

Query:  QKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEA
        QKDAE+WW DNK  +NP GG   WE FKEAFLK YYPK  R+KKQQEF  L QG  T ++Y+++F RL+RFAPS+ DTEEK TEKFVLGL P+ RRMLEA
Subjt:  QKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEYYPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEA

Query:  FNPKTYEEALRTAKALEKPKDKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCM
        FNPKTYEEALRTAKALE+P ++K+ E  V IG+KRP E    +  PP+ R R  +RP        PP      P  +  A    +  C  CG+ H GRC+
Subjt:  FNPKTYEEALRTAKALEKPKDKKRCEEQVIIGQKRPHESGGFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCM

Query:  AGSRACYRCGQEGHIAVNCTAENAAAQANQ---PRVVEQTDQPAPPRAQARAYASTSKDTRRSDAVVT--------------------------------
        AGS  CY CG  GH+A  C  ++          P + E T Q +P   Q +AY +TS +   S  VVT                                
Subjt:  AGSRACYRCGQEGHIAVNCTAENAAAQANQ---PRVVEQTDQPAPPRAQARAYASTSKDTRRSDAVVT--------------------------------

Query:  ------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKGT------------
                      PAGVDLV++ RV+DGQV+I  QT+ VDL VV+MTDFDVILGMDWLAEN A+IDC KKEV F+PP G TFKFKGT            
Subjt:  ------------APPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKGT------------

Query:  ------------------NVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSP
                          N +GKEK    +P+VN+F DVFP+DLP IPPSR VD+ I+L+ GT PISKAPYRM PAELKELK QLQDLL+          
Subjt:  ------------------NVRGKEKTPVNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSP

Query:  WGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLME
                  KD SMRLCI YRELNKRT+KN Y L RIEDLFDQLR ATVFSKIDLRSGYHQI+I  +D+PKTAFRTRYGHYEFVVMSFGLTNAPAV ME
Subjt:  WGVPVLFIRKKDGSMRLCIDYRELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLME

Query:  LMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLG
        LMN VFKECLD+F+IVFIDDI+IYS+TDL+H+EHLRK LT LRE+KLYA F+KCEF + QVSFLGH+VSKDGI VDP K+EA+TK +RPT VTE+RSFLG
Subjt:  LMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLG

Query:  LGGYCR--------------------------------------RLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPTH
        L GY R                                      RLV+APVL VPESS GY IYSDAS KGLGCVLMQHGKVVAYA+ QLK+YEKNYPTH
Subjt:  LGGYCR--------------------------------------RLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGKVVAYATLQLKEYEKNYPTH

Query:  DLELAAVVFALKIWRRYLYGEKTQIFTDH-----------------------------------------------------------------------
        DLELAAVVFALKIWR Y YGEKTQI+TDH                                                                       
Subjt:  DLELAAVVFALKIWRRYLYGEKTQIFTDH-----------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------KNIQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQ
                                     K+IQYHPGK N+V DAL RKTVHS ALITREVRVQREFERANIAVAT+GVI QLARLTVQPTLRQ+II SQ
Subjt:  -----------------------------KNIQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQ

Query:  REDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQ
        REDPNLQKVLGQLD+SPVDGF KSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHP GTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQ+VKAPRQ
Subjt:  REDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQ

Query:  KAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKAL
        K AGLLQPLSIP+WKWENI MDFI GLPKTPKGYTVIWVVVDRLTKSAHFLPG VTYTVDNWAQLYVK+IVRLHGV VSIVSDRDPRFTLAFW GLQKAL
Subjt:  KAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKAL

Query:  GTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK
        GTRL+FSTAFHPQ + QTERLNQIL+DMLRACVL+FK SWDSKLHLMEFSYNNSFQATIGMAPFEALYGK
Subjt:  GTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.2e-91

27.04

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Query:  KTPVNVPIVNKFPDVFPD-DLPRIP-PSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYR
        K P    I  +F D+  + +  ++P P + +++ +EL      +    Y + P +++ +  ++   L  G IR S +    PV+F+ KK+G++R+ +DY+
Subjt:  KTPVNVPIVNKFPDVFPD-DLPRIP-PSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYR

Query:  ELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIV
         LNK    N Y L  IE L  +++ +T+F+K+DL+S YH IR+ + D  K AFR   G +E++VM +G++ APA     +N +  E  +  ++ ++DDI+
Subjt:  ELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIV

Query:  IYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR---------------
        I+S+++ EH +H++ VL  L+   L    +KCEF   QV F+G+ +S+ G +     ++ + +W++P    E+R FLG   Y R+               
Subjt:  IYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR---------------

Query:  -----------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK-----VVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRY
                               LV+ PVL   + S+  ++ +DAS   +G VL Q         V Y + ++ + + NY   D E+ A++ +LK WR Y
Subjt:  -----------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK-----VVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRY

Query:  LYG--EKTQIFTDHKN-----------------------------IQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARL
        L    E  +I TDH+N                             I Y PG  N +ADAL R       ++     + ++ E        +  I  + ++
Subjt:  LYG--EKTQIFTDHKN-----------------------------IQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARL

Query:  TVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGR--LCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAG
        ++    + +++T    D  L  +L   D+   +       +GLL   +  + +P    L + I+ + H     +HP    +   + + F WK +++ +  
Subjt:  TVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGR--LCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAG

Query:  FVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDR
        +V  C  CQ  K+   K  G LQP+   +  WE+++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ ++++   G P  I++D 
Subjt:  FVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDR

Query:  DPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALY
        D  FT   W          + FS  + PQT+ QTER NQ ++ +LR        +W   + L++ SYNN+  +   M PFE ++
Subjt:  DPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALY

P0CT35 Transposon Tf2-2 polyprotein

1.2e-91

27.04

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Query:  KTPVNVPIVNKFPDVFPD-DLPRIP-PSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYR
        K P    I  +F D+  + +  ++P P + +++ +EL      +    Y + P +++ +  ++   L  G IR S +    PV+F+ KK+G++R+ +DY+
Subjt:  KTPVNVPIVNKFPDVFPD-DLPRIP-PSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYR

Query:  ELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIV
         LNK    N Y L  IE L  +++ +T+F+K+DL+S YH IR+ + D  K AFR   G +E++VM +G++ APA     +N +  E  +  ++ ++DDI+
Subjt:  ELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIV

Query:  IYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR---------------
        I+S+++ EH +H++ VL  L+   L    +KCEF   QV F+G+ +S+ G +     ++ + +W++P    E+R FLG   Y R+               
Subjt:  IYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR---------------

Query:  -----------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK-----VVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRY
                               LV+ PVL   + S+  ++ +DAS   +G VL Q         V Y + ++ + + NY   D E+ A++ +LK WR Y
Subjt:  -----------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK-----VVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRY

Query:  LYG--EKTQIFTDHKN-----------------------------IQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARL
        L    E  +I TDH+N                             I Y PG  N +ADAL R       ++     + ++ E        +  I  + ++
Subjt:  LYG--EKTQIFTDHKN-----------------------------IQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARL

Query:  TVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGR--LCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAG
        ++    + +++T    D  L  +L   D+   +       +GLL   +  + +P    L + I+ + H     +HP    +   + + F WK +++ +  
Subjt:  TVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGR--LCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAG

Query:  FVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDR
        +V  C  CQ  K+   K  G LQP+   +  WE+++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ ++++   G P  I++D 
Subjt:  FVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDR

Query:  DPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALY
        D  FT   W          + FS  + PQT+ QTER NQ ++ +LR        +W   + L++ SYNN+  +   M PFE ++
Subjt:  DPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALY

P0CT41 Transposon Tf2-12 polyprotein

1.2e-91

27.04

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Query:  KTPVNVPIVNKFPDVFPD-DLPRIP-PSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYR
        K P    I  +F D+  + +  ++P P + +++ +EL      +    Y + P +++ +  ++   L  G IR S +    PV+F+ KK+G++R+ +DY+
Subjt:  KTPVNVPIVNKFPDVFPD-DLPRIP-PSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYR

Query:  ELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIV
         LNK    N Y L  IE L  +++ +T+F+K+DL+S YH IR+ + D  K AFR   G +E++VM +G++ APA     +N +  E  +  ++ ++DDI+
Subjt:  ELNKRTIKNNYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIV

Query:  IYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR---------------
        I+S+++ EH +H++ VL  L+   L    +KCEF   QV F+G+ +S+ G +     ++ + +W++P    E+R FLG   Y R+               
Subjt:  IYSRTDLEHEEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR---------------

Query:  -----------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK-----VVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRY
                               LV+ PVL   + S+  ++ +DAS   +G VL Q         V Y + ++ + + NY   D E+ A++ +LK WR Y
Subjt:  -----------------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK-----VVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRY

Query:  LYG--EKTQIFTDHKN-----------------------------IQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARL
        L    E  +I TDH+N                             I Y PG  N +ADAL R       ++     + ++ E        +  I  + ++
Subjt:  LYG--EKTQIFTDHKN-----------------------------IQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARL

Query:  TVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGR--LCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAG
        ++    + +++T    D  L  +L   D+   +       +GLL   +  + +P    L + I+ + H     +HP    +   + + F WK +++ +  
Subjt:  TVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGR--LCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAG

Query:  FVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDR
        +V  C  CQ  K+   K  G LQP+   +  WE+++MDFI  LP++  GY  ++VVVDR +K A  +P   + T +  A+++ ++++   G P  I++D 
Subjt:  FVSKCLVCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDR

Query:  DPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALY
        D  FT   W          + FS  + PQT+ QTER NQ ++ +LR        +W   + L++ SYNN+  +   M PFE ++
Subjt:  DPRFTLAFWHGLQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

8.6e-98

32.29

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Query:  KFPDVFPDDLPRIPP---SRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKN
        K+ ++  +DLP  P    +  V + IE+KPG       PY +     +E+   +Q LL+  FI PS SP   PV+ + KKDG+ RLC+DYR LNK TI +
Subjt:  KFPDVFPDDLPRIPP---SRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKN

Query:  NYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEH
         + L RI++L  ++  A +F+ +DL SGYHQI +  KD  KTAF T  G YE+ VM FGL NAP+     M   F++    F+ V++DDI+I+S +  EH
Subjt:  NYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEH

Query:  EEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR------------------------
         +HL  VL  L+   L  K  KC+F   +  FLG+ +    I+    K  AI  +  P  V + + FLG+  Y RR                        
Subjt:  EEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR------------------------

Query:  ------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK------VVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFT
                    L  +PVL+   +   Y + +DAS  G+G VL +         VV Y +  L+  +KNYP  +LEL  ++ AL  +R  L+G+   + T
Subjt:  ------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK------VVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFT

Query:  DH--------KN-------------------IQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQ
        DH        KN                   ++Y  G  N+VADA+ R         +R +  +              V+  +  LT Q  +  + +++ 
Subjt:  DH--------KN-------------------IQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQ

Query:  REDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQ
        R   + QK L +L E+    +    DE + YQ RL VP I+     + +   ++ F  H   T     +   ++W  ++  +  ++  C+ CQ +K+ R 
Subjt:  REDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQ

Query:  KAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKAL
        +  GLLQPL I + +W +I+MDF+ GLP T     +I VVVDR +K AHF+    T        L  + I   HG P +I SDRD R T   +  L K L
Subjt:  KAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKAL

Query:  GTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFE
        G +   S+A HPQT+ Q+ER  Q L  +LRA V     +W   L  +EF YN++   T+G +PFE
Subjt:  GTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFE

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.9e-97

32.16

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Query:  KFPDVFPDDLPRIPP---SRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKN
        K+ ++  +DLP  P    +  V + IE+KPG       PY +     +E+   +Q LL+  FI PS SP   PV+ + KKDG+ RLC+DYR LNK TI +
Subjt:  KFPDVFPDDLPRIPP---SRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKN

Query:  NYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEH
         + L RI++L  ++  A +F+ +DL SGYHQI +  KD  KTAF T  G YE+ VM FGL NAP+     M   F++    F+ V++DDI+I+S +  EH
Subjt:  NYLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEH

Query:  EEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR------------------------
         +HL  VL  L+   L  K  KC+F   +  FLG+ +    I+    K  AI  +  P  V + + FLG+  Y RR                        
Subjt:  EEHLRKVLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRR------------------------

Query:  ------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK------VVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFT
                    L  +PVL+   +   Y + +DAS  G+G VL +         VV Y +  L+  +KNYP  +LEL  ++ AL  +R  L+G+   + T
Subjt:  ------------LVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHGK------VVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFT

Query:  DH--------KN-------------------IQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQ
        DH        KN                   ++Y  G  N+VADA+ R         +R +  +              V+  +  LT Q  +  + +++ 
Subjt:  DH--------KN-------------------IQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLARLTVQPTLRQKIITSQ

Query:  REDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQ
        R   + QK L +L E+    +    DE + YQ RL VP I+     + +   ++ F  H   T     +   ++W  ++  +  ++  C+ CQ +K+ R 
Subjt:  REDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCLVCQQVKAPRQ

Query:  KAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKAL
        +  GLLQPL I + +W +I+MDF+ GLP T     +I VVVDR +K AHF+    T        L  + I   HG P +I SDRD R T   +  L K L
Subjt:  KAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHGLQKAL

Query:  GTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFE
        G +   S+A HPQT+ Q+ER  Q L  +LRA       +W   L  +EF YN++   T+G +PFE
Subjt:  GTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFE

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.3e-13

46.15

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Query:  HLRKVLTTLREHKLYAKFSKCEFLLRQVSFLG--HVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRRLV
        HL  VL    +H+ YA   KC F   Q+++LG  H++S +G+S DP K+EA+  W  P   TE+R FLGL GY RR V
Subjt:  HLRKVLTTLREHKLYAKFSKCEFLLRQVSFLG--HVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRRLV

Sequences

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CDS sequence

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ATGACAAGCAAAGAGGCGTTCCTCAAGAGACGCCCATCCGGCCATATGCGGGCCAACGTAGAAGAATGCCATGATGCGATCGAGGAGGACGATGCATCATCCAAC
ACACCACCACGCAAAGTGGGCATTGAAGACATGTTGAGACACAAGCATAACAGAGACATCAGCATAGACATGAAGGACAAGATAGGCTTGTTGAAGGACCGGGTA
GGGCCCCGAGCCTTAACCTCAAAAGTCGAGGTTCCGGAAGGAATTTGGTCATGCGGTTCGGGAGTTAAGTCCGTCCATATGAAATATGAATGCTCGCCAAGTTTG
GTGTCAATCGGACATGGGACGGACAATGCACGACACCGTATGACACCTCACGAAAATCATGTCTACTCCTGTGTGGGCGAGCGTGCCGAGACGAGTGTCTCGGGG
CGACTTCCTTTGAAATGGGTTTTTGAAGGACAGTACCGGACGGCACGGGTGTGCCGGTATTGCGCCCTAGCCCGCGTGTTGGAGGTTGCTACATACACCCGCTAT
CCGATCACGACGCCGCACGGTCAAAGATATAGGACCGTGACACTTGGCACGTTCCATGGTCCCAACGTCGATGCTCCGTCACCGTTAGAGGGCCCACCTCAAGAA
AGATCAGAGACTGGGCCGGTAACAGTTACGCCGCCGCCAGTCTTACCACCAGTTGAGCTACCTCCTCTAGCTCCACTACAAGCTGAGCCTACACCACCAGTAGAG
CCTCCACCACCAGTAGAGCCTCCACCACAAGTAGAACCTCCACCCCCGCCTACCCTACCACTCCAAGTCGCACCTGAAGCTGCACCCCCAGCGGGCGGAGTAGAT
GCTAATACGAAGTTAATGTCCCAAGCACAGGCCCAAGCACAGGCGTTGGCACTGGCACTGGTACAGGTACAGGCACAGGCACAGGCACAGGCACAGGCACAGGTC
AATGCTCGGGCTAATGCCCCAGTAAACCCTCCACAACCTATTAGATGTTTAAACTGGATAAGAGATTTCAAGAGATACGACCCTCGACCATTCACTGGTTCCTTA
GCAGACCCCATAGAAGGCCAAATGTGGATTGCAGCGGTGGAAACCACCTTTGAGACTATGGAGTGCCTAGAGAACCAAAAGGTCGCCTGTGCAACCTTCGTCCTA
CAAAAGGACGCAGAGATATGGTGGAGAGATAACAAGACTCTTCTTAACCCAGAAGGGGGACCAGTGAACTGGGAACGATTTAAGGAGGCCTTCCTTAAAGAATAT
TATCCTAAGTCAGAGCGACTCAAAAAGCAGCAGGAGTTCGCCCACCTGGTACAGGGCGGACTCACAGCGGAGAAGTACAACCGAGAGTTTAATAGACTCAAGAGA
TTCGCACCGTCCATGGTGGACACTGAGGAAAAGATGACAGAGAAATTTGTATTGGGTTTGGTACCAAGAATCCGCCGCATGTTGGAGGCGTTTAACCCAAAGACC
TATGAGGAAGCCTTGAGAACTGCCAAGGCTTTAGAGAAACCAAAGGATAAGAAACGATGTGAAGAGCAAGTCATAATTGGGCAGAAGCGTCCTCATGAATCAGGA
GGCTTTGACCGTCCACCACCAGCACATAGGCACCGTTCCAATAACAGACCCGCTCCTAGATGGGATGAGCGACGCCCTCCCCGACGTACTGACAGGAACCCCAGG
AATCAAGATGGGGCCAGAGGGAGGAGAGAGGAAGGGTGCACTATCTGTGGAAGACTACACAGTGGAAGGTGCATGGCTGGCAGCCGGGCGTGTTATAGATGTGGT
CAAGAGGGGCACATCGCCGTGAACTGCACGGCCGAAAATGCTGCGGCACAAGCAAACCAGCCTAGAGTAGTAGAGCAAACGGATCAACCAGCACCACCGCGAGCT
CAAGCTAGGGCCTACGCGTCAACCAGCAAGGACACTAGGAGGTCCGACGCCGTGGTGACAGCACCCCCTGCGGGGGTAGACTTAGTATCTAGGGGTAGAGTAAAG
GATGGCCAAGTAATCATAGGGAACCAAACTTTAAGCGTTGACTTGATGGTGGTAAACATGACAGATTTCGACGTCATACTAGGCATGGATTGGCTAGCTGAAAAC
CGAGCTAGTATAGACTGTTGCAAAAAGGAAGTAAAATTTTCACCACCGACAGGACCTACCTTTAAATTTAAAGGCACAAACGTAAGAGGAAAGGAAAAGACCCCA
GTAAACGTGCCAATAGTAAACAAGTTCCCGGATGTTTTTCCGGACGACTTACCTAGAATACCCCCTTCCCGAGCGGTCGACTACGTCATCGAACTCAAGCCGGGA
ACTGAGCCTATTTCCAAAGCACCCTATCGCATGGTGCCAGCAGAGTTGAAGGAACTTAAGGCGCAATTGCAAGACTTACTAAATAAAGGATTCATTCGACCTAGC
GTGTCCCCCTGGGGTGTGCCAGTGTTGTTTATTAGGAAGAAAGATGGATCGATGCGTCTATGCATCGATTACAGAGAGCTAAACAAGAGAACCATAAAAAACAAC
TATCTTCTGCTTAGAATAGAAGACTTGTTTGATCAACTCAGAGAGGCAACAGTGTTCTCTAAGATAGATCTTCGGTCCGGTTACCACCAAATTAGGATTAATGAA
AAAGACGTACCAAAAACAGCGTTTAGGACAAGGTACGGTCACTACGAGTTTGTAGTGATGTCATTTGGCCTCACCAATGCCCCAGCTGTGTTAATGGAGTTAATG
AACTGGGTATTCAAGGAATGCCTAGACATGTTCCTGATTGTGTTCATTGACGACATCGTCATATACTCGAGAACAGACCTAGAGCACGAGGAACACCTCCGAAAA
GTCCTAACCACCCTAAGAGAGCACAAGTTGTACGCCAAGTTCTCCAAATGCGAATTTTTGTTACGACAAGTCTCTTTCCTAGGACACGTGGTGTCGAAGGACGGA
ATATCTGTAGATCCCACCAAGGTTGAAGCGATCACAAAGTGGGAACGCCCAACTAGGGTAACGGAAGTAAGGAGTTTCCTAGGATTGGGGGGATACTGCCGAAGA
TTGGTAACCGCCCCAGTACTCATAGTACCCGAGAGCTCAGAAGGATATGTGATCTATAGTGATGCCTCCATGAAAGGACTGGGATGTGTGTTAATGCAACACGGC
AAGGTTGTCGCATACGCAACTCTTCAACTTAAGGAATATGAAAAGAACTACCCTACCCACGACCTAGAGTTGGCCGCTGTAGTGTTCGCGCTGAAAATCTGGCGA
CGTTACCTGTATGGAGAGAAAACCCAAATTTTTACCGACCACAAAAATATCCAGTACCACCCTGGAAAAACAAATATGGTCGCAGATGCCTTGGGTAGGAAGACG
GTCCACTCGTTGGCCCTCATTACGAGGGAAGTAAGGGTACAAAGAGAGTTCGAGCGAGCCAACATAGCTGTAGCGACCGAGGGAGTCATAACACAGCTGGCCCGA
CTCACGGTACAACCTACGCTTAGGCAAAAAATTATTACCTCCCAACGAGAGGATCCTAACTTACAGAAAGTCCTAGGACAGCTAGATGAAAGTCCGGTAGATGGA
TTCTTGAAGTCATCAGATGAAGGACTATTGTATCAGGGACGCTTATGTGTTCCGGCAATAGAAGATTTAAGGAAGGAGATACTGATGGAAGCTCACAACTCGCCA
TTTGCCATGCATCCAAGAGGTACTAAGATGTACCAAGATTTAAAACAACACTTTTGGTGGAAGAGCATGAAGAGGGATGTGGCCGGGTTTGTGAGCAAGTGCTTA
GTTTGTCAACAAGTAAAAGCTCCAAGACAAAAGGCGGCGGGGTTGTTGCAGCCCCTAAGCATACCGAAGTGGAAGTGGGAAAACATAGCGATGGACTTCATAGCA
GGTTTACCCAAAACGCCCAAAGGCTATACAGTGATCTGGGTAGTTGTCGATAGGTTGACCAAGTCGGCACACTTTCTACCTGGGAATGTTACATATACAGTTGAC
AATTGGGCACAACTGTATGTGAAACAAATAGTAAGACTACATGGAGTCCCAGTGTCTATAGTGTCAGATCGGGATCCACGCTTTACGTTAGCATTTTGGCACGGA
CTTCAAAAAGCACTAGGTACCCGCCTCAACTTTAGTACTGCCTTTCACCCCCAAACAAATGAACAAACGGAGCGTTTAAACCAAATACTAAAGGATATGCTACGC
GCTTGCGTACTAAATTTTAAGGGAAGTTGGGATTCCAAACTCCACTTGATGGAATTCTCGTATAACAACAGTTTCCAAGCAACTATTGGAATGGCACCGTTTGAG
GCCCTGTACGGGAAATGGTAA

mRNA sequence

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Protein sequence

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MTSKEAFLKRRPSGHMRANVEECHDAIEEDDASSNTPPRKVGIEDMLRHKHNRDISIDMKDKIGLLKDRVGPRALTSKVEVPEGIWSCGSGVKSVHMKYECSPSL
VSIGHGTDNARHRMTPHENHVYSCVGERAETSVSGRLPLKWVFEGQYRTARVCRYCALARVLEVATYTRYPITTPHGQRYRTVTLGTFHGPNVDAPSPLEGPPQE
RSETGPVTVTPPPVLPPVELPPLAPLQAEPTPPVEPPPPVEPPPQVEPPPPPTLPLQVAPEAAPPAGGVDANTKLMSQAQAQAQALALALVQVQAQAQAQAQAQV
NARANAPVNPPQPIRCLNWIRDFKRYDPRPFTGSLADPIEGQMWIAAVETTFETMECLENQKVACATFVLQKDAEIWWRDNKTLLNPEGGPVNWERFKEAFLKEY
YPKSERLKKQQEFAHLVQGGLTAEKYNREFNRLKRFAPSMVDTEEKMTEKFVLGLVPRIRRMLEAFNPKTYEEALRTAKALEKPKDKKRCEEQVIIGQKRPHESG
GFDRPPPAHRHRSNNRPAPRWDERRPPRRTDRNPRNQDGARGRREEGCTICGRLHSGRCMAGSRACYRCGQEGHIAVNCTAENAAAQANQPRVVEQTDQPAPPRA
QARAYASTSKDTRRSDAVVTAPPAGVDLVSRGRVKDGQVIIGNQTLSVDLMVVNMTDFDVILGMDWLAENRASIDCCKKEVKFSPPTGPTFKFKGTNVRGKEKTP
VNVPIVNKFPDVFPDDLPRIPPSRAVDYVIELKPGTEPISKAPYRMVPAELKELKAQLQDLLNKGFIRPSVSPWGVPVLFIRKKDGSMRLCIDYRELNKRTIKNN
YLLLRIEDLFDQLREATVFSKIDLRSGYHQIRINEKDVPKTAFRTRYGHYEFVVMSFGLTNAPAVLMELMNWVFKECLDMFLIVFIDDIVIYSRTDLEHEEHLRK
VLTTLREHKLYAKFSKCEFLLRQVSFLGHVVSKDGISVDPTKVEAITKWERPTRVTEVRSFLGLGGYCRRLVTAPVLIVPESSEGYVIYSDASMKGLGCVLMQHG
KVVAYATLQLKEYEKNYPTHDLELAAVVFALKIWRRYLYGEKTQIFTDHKNIQYHPGKTNMVADALGRKTVHSLALITREVRVQREFERANIAVATEGVITQLAR
LTVQPTLRQKIITSQREDPNLQKVLGQLDESPVDGFLKSSDEGLLYQGRLCVPAIEDLRKEILMEAHNSPFAMHPRGTKMYQDLKQHFWWKSMKRDVAGFVSKCL
VCQQVKAPRQKAAGLLQPLSIPKWKWENIAMDFIAGLPKTPKGYTVIWVVVDRLTKSAHFLPGNVTYTVDNWAQLYVKQIVRLHGVPVSIVSDRDPRFTLAFWHG
LQKALGTRLNFSTAFHPQTNEQTERLNQILKDMLRACVLNFKGSWDSKLHLMEFSYNNSFQATIGMAPFEALYGKW

CmoCh12G006910 (gene) of Cucurbita moschata (Rifu) v1 genome