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CmoCh12G006960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G006960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationCmo_Chr12:5335488..5335960
RNA-Seq ExpressionCmoCh12G006960
SyntenyCmoCh12G006960
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038227.1 hypothetical protein E6C27_scaffold270G00670 [Cucumis melo var. makuwa]4.0e-0660.34Show/hide
Query:  NPSQANERVGPLVQDLESVLKGTTFLLSLK-VGRSEFRLAPHVSSHSPSLTPEMGGLL
        NPS+ANE+VGPLVQDL+SVLKGTT+LLS K VG +       ++S+   L  EMGGLL
Subjt:  NPSQANERVGPLVQDLESVLKGTTFLLSLK-VGRSEFRLAPHVSSHSPSLTPEMGGLL

KAA0047518.1 gag-protease polyprotein [Cucumis melo var. makuwa]2.4e-0668.89Show/hide
Query:  NPSQANERVGPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSH
        NPS+ANE+VGPLVQDL+SVLKGTT+LLS K     F LAP+V S+
Subjt:  NPSQANERVGPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSH

KAA0047869.1 hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa]1.3e-1252.69Show/hide
Query:  NPSQANERVGPLVQDLESVLKGTTFLLSLK-VGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLGY
        NPS+ANE+VGPLVQDL+SVLKGTT+LLS K VG +       ++ HS  L+P+    L +R +   T+ +LRI+ N+Q+F+VSSGL+ SYLG+
Subjt:  NPSQANERVGPLVQDLESVLKGTTFLLSLK-VGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLGY

KAA0054446.1 hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa]1.1e-0646.99Show/hide
Query:  GPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLGY
        GP VQDL+SVLKGTT+LL+LK       L P   +   SL+ +             T+A+LRII  +QEF VSSGL+ SYLG+
Subjt:  GPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLGY

TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]8.4e-1264.52Show/hide
Query:  KVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLG
        K GRSEF  AP+V S+   LTPEMGGLL +R RA LT+A+LRI+LN+Q+F+VS GL+ SYLG
Subjt:  KVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLG

TrEMBL top hitse value%identityAlignment
A0A5A7T9D5 Uncharacterized protein2.0e-0660.34Show/hide
Query:  NPSQANERVGPLVQDLESVLKGTTFLLSLK-VGRSEFRLAPHVSSHSPSLTPEMGGLL
        NPS+ANE+VGPLVQDL+SVLKGTT+LLS K VG +       ++S+   L  EMGGLL
Subjt:  NPSQANERVGPLVQDLESVLKGTTFLLSLK-VGRSEFRLAPHVSSHSPSLTPEMGGLL

A0A5A7U348 Uncharacterized protein6.3e-1352.69Show/hide
Query:  NPSQANERVGPLVQDLESVLKGTTFLLSLK-VGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLGY
        NPS+ANE+VGPLVQDL+SVLKGTT+LLS K VG +       ++ HS  L+P+    L +R +   T+ +LRI+ N+Q+F+VSSGL+ SYLG+
Subjt:  NPSQANERVGPLVQDLESVLKGTTFLLSLK-VGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLGY

A0A5D3CRT6 Uncharacterized protein5.1e-0746.99Show/hide
Query:  GPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLGY
        GP VQDL+SVLKGTT+LL+LK       L P   +   SL+ +             T+A+LRII  +QEF VSSGL+ SYLG+
Subjt:  GPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLGY

A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass4.1e-1264.52Show/hide
Query:  KVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLG
        K GRSEF  AP+V S+   LTPEMGGLL +R RA LT+A+LRI+LN+Q+F+VS GL+ SYLG
Subjt:  KVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLG

A0A5D3DRY2 Gag-protease polyprotein1.1e-0668.89Show/hide
Query:  NPSQANERVGPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSH
        NPS+ANE+VGPLVQDL+SVLKGTT+LLS K     F LAP+V S+
Subjt:  NPSQANERVGPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCATGATTAGTAAGTCGATCCTTCACAGTAAACCGAATCCCTCTCAGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACCTGGAGTCAGTGCTTAAGGGAACTAC
CTTTCTTCTATCCCTAAAAGTGGGTAGGAGTGAATTCCGTCTTGCACCCCACGTCTCTAGCCATTCACCCAGTCTTACCCCTGAAATGGGAGGCCTGTTGAGTCGGCGAA
CTAGAGCCACTCTCACCCATGCAAATCTAAGGATAATTCTGAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAAACCGAGTTACCTAGGTTATCGAATGAAAAGAAAA
TCAGTCTCAACAGTAAACGACTTTATAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCATGATTAGTAAGTCGATCCTTCACAGTAAACCGAATCCCTCTCAGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACCTGGAGTCAGTGCTTAAGGGAACTAC
CTTTCTTCTATCCCTAAAAGTGGGTAGGAGTGAATTCCGTCTTGCACCCCACGTCTCTAGCCATTCACCCAGTCTTACCCCTGAAATGGGAGGCCTGTTGAGTCGGCGAA
CTAGAGCCACTCTCACCCATGCAAATCTAAGGATAATTCTGAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAAACCGAGTTACCTAGGTTATCGAATGAAAAGAAAA
TCAGTCTCAACAGTAAACGACTTTATAAAGTGA
Protein sequenceShow/hide protein sequence
MTMISKSILHSKPNPSQANERVGPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIILNKQEFMVSSGLKPSYLGYRMKRK
SVSTVNDFIK