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CmoCh12G006980 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G006980
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationCmo_Chr12:5339080..5343728
RNA-Seq ExpressionCmoCh12G006980
SyntenyCmoCh12G006980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA3018940.1 low affinity sulfate transporter 3, partial [Olea europaea subsp. europaea]2.5e-1850Show/hide
Query:  TTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFLESTSDIVNVQH-QESYCRVDYPFINTRFINILFKAIRFDRSI
        TTS+S +NFL+HT S  ASQAATYSASMV+SA+Q C +LLH  APP               S+++ +++ +++Y    Y F++TRFI IL K I  D  I
Subjt:  TTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFLESTSDIVNVQH-QESYCRVDYPFINTRFINILFKAIRFDRSI

Query:  KLYIPGSRCLLQSINGSFKLAN
        K YIP S CLL+SING  +LAN
Subjt:  KLYIPGSRCLLQSINGSFKLAN

KAA0040702.1 hypothetical protein E6C27_scaffold529G00170 [Cucumis melo var. makuwa]1.1e-1882.09Show/hide
Query:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL
        KV G  IFGTTSKSVKNFLSHT SF ASQAATYSAS+VESA+Q CFMLLH  APPF+VKTD DVDFL
Subjt:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL

KAA0054936.1 hypothetical protein E6C27_scaffold43052G00720 [Cucumis melo var. makuwa]1.8e-1673.13Show/hide
Query:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL
        KV GRC+FGT S+ VKNFLSHT SF ASQ ATYSAS+VES ++ CF LLHI APPFRV  D DVDFL
Subjt:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL

KAA0056634.1 hypothetical protein E6C27_scaffold288G001550 [Cucumis melo var. makuwa]8.1e-1773.24Show/hide
Query:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFLESTS
        KV GRCIFGT S+SVKNFLSHT  F  SQAATYSAS+V+SA+Q CFMLLH  AP FRV TD D DFL S S
Subjt:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFLESTS

TYK22725.1 hypothetical protein E5676_scaffold1163G00480 [Cucumis melo var. makuwa]1.8e-1673.13Show/hide
Query:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL
        KV GRC+FGT S+ VKNFLSHT SF ASQ ATYSAS+VES ++ CF LLHI APPFRV  D DVDFL
Subjt:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL

TrEMBL top hitse value%identityAlignment
A0A5A7TB75 Uncharacterized protein5.5e-1982.09Show/hide
Query:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL
        KV G  IFGTTSKSVKNFLSHT SF ASQAATYSAS+VESA+Q CFMLLH  APPF+VKTD DVDFL
Subjt:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL

A0A5A7UKW7 Uncharacterized protein8.7e-1773.13Show/hide
Query:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL
        KV GRC+FGT S+ VKNFLSHT SF ASQ ATYSAS+VES ++ CF LLHI APPFRV  D DVDFL
Subjt:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL

A0A5A7UN55 Uncharacterized protein3.9e-1773.24Show/hide
Query:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFLESTS
        KV GRCIFGT S+SVKNFLSHT  F  SQAATYSAS+V+SA+Q CFMLLH  AP FRV TD D DFL S S
Subjt:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFLESTS

A0A5D3DGM0 Uncharacterized protein8.7e-1773.13Show/hide
Query:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL
        KV GRC+FGT S+ VKNFLSHT SF ASQ ATYSAS+VES ++ CF LLHI APPFRV  D DVDFL
Subjt:  KVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFL

A0A5D3DRM1 Uncharacterized protein4.8e-1568.57Show/hide
Query:  IKVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFLES
        I+V  + +FGTTSKS +NFL+ T SF ASQAATYS S+VESAM  C ML H  A PFRV TDPDVDFLES
Subjt:  IKVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFLES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCATGATTAGTAAGTCGATCCTTCACAGTAAACCGAATCCCTCTCAGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACCTGGAGTCAGTGCTTAAGGGAACTAC
CTTTCTTCTATCCCTAAAAGTGGGTAGGAGTGAATTCCGTCTTGCACCCCACGTCTCTAGCCATTCACCCAGTCTTACCCCTGAAATGGGAGGCCTGTTGAGTCGGCGAA
CTAGAGCCACTCTCACCCATGCAAATCTAAGGATAATTCCGAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAAACCGAGTTACCTAGGTTATCGAATGAAAAGAAAA
TCAGTCTCAACAGTAAACGACTTTATAAAAGTGACGGGAAGATGCATATTTGGAACGACTTCCAAATCAGTTAAGAACTTCCTAAGCCATACAGATTCTTTCACTGCTTC
ACAAGCAGCAACATACTCAGCCTCCATGGTAGAATCAGCAATGCAACCTTGCTTTATGCTTCTCCATATTATTGCTCCTCCGTTCAGAGTGAAGACAGATCCTGATGTCG
ATTTCCTCGAATCTACATCGGATATCGTCAACGTACAACACCAGGAAAGCTACTGTAGAGTTGACTATCCTTTTATAAACACAAGGTTCATCAACATTCTGTTTAAAGCC
ATAAGATTTGATCGCAGTATCAAACTTTATATTCCAGGATCGAGATGCTTGCTTCAATCCATAAATGGATCTTTTAAGCTTGCAAACCCTTTGCTCGTGATCCTGTCAAT
GGATCCTCAACGCCATCATCAGCTCATTAAGAAGAGCAGTCAAGTTATATTCTATTTTGTTCATAACCACATTGGTGCGGAACTGGAAGAAGCTCTTCGGAAGAGACATC
ATGATAAAACTGACTTGACTCTTCTCATCAATGACAGCTTCATTTTCTTCTGCCACATTGAAGTGGACCATCATGTCCAGGACATGTTCTCTAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCATGATTAGTAAGTCGATCCTTCACAGTAAACCGAATCCCTCTCAGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACCTGGAGTCAGTGCTTAAGGGAACTAC
CTTTCTTCTATCCCTAAAAGTGGGTAGGAGTGAATTCCGTCTTGCACCCCACGTCTCTAGCCATTCACCCAGTCTTACCCCTGAAATGGGAGGCCTGTTGAGTCGGCGAA
CTAGAGCCACTCTCACCCATGCAAATCTAAGGATAATTCCGAATAAACAGGAGTTCATGGTTAGCTCAGGATTAAAACCGAGTTACCTAGGTTATCGAATGAAAAGAAAA
TCAGTCTCAACAGTAAACGACTTTATAAAAGTGACGGGAAGATGCATATTTGGAACGACTTCCAAATCAGTTAAGAACTTCCTAAGCCATACAGATTCTTTCACTGCTTC
ACAAGCAGCAACATACTCAGCCTCCATGGTAGAATCAGCAATGCAACCTTGCTTTATGCTTCTCCATATTATTGCTCCTCCGTTCAGAGTGAAGACAGATCCTGATGTCG
ATTTCCTCGAATCTACATCGGATATCGTCAACGTACAACACCAGGAAAGCTACTGTAGAGTTGACTATCCTTTTATAAACACAAGGTTCATCAACATTCTGTTTAAAGCC
ATAAGATTTGATCGCAGTATCAAACTTTATATTCCAGGATCGAGATGCTTGCTTCAATCCATAAATGGATCTTTTAAGCTTGCAAACCCTTTGCTCGTGATCCTGTCAAT
GGATCCTCAACGCCATCATCAGCTCATTAAGAAGAGCAGTCAAGTTATATTCTATTTTGTTCATAACCACATTGGTGCGGAACTGGAAGAAGCTCTTCGGAAGAGACATC
ATGATAAAACTGACTTGACTCTTCTCATCAATGACAGCTTCATTTTCTTCTGCCACATTGAAGTGGACCATCATGTCCAGGACATGTTCTCTAACTGA
Protein sequenceShow/hide protein sequence
MTMISKSILHSKPNPSQANERVGPLVQDLESVLKGTTFLLSLKVGRSEFRLAPHVSSHSPSLTPEMGGLLSRRTRATLTHANLRIIPNKQEFMVSSGLKPSYLGYRMKRK
SVSTVNDFIKVTGRCIFGTTSKSVKNFLSHTDSFTASQAATYSASMVESAMQPCFMLLHIIAPPFRVKTDPDVDFLESTSDIVNVQHQESYCRVDYPFINTRFINILFKA
IRFDRSIKLYIPGSRCLLQSINGSFKLANPLLVILSMDPQRHHQLIKKSSQVIFYFVHNHIGAELEEALRKRHHDKTDLTLLINDSFIFFCHIEVDHHVQDMFSN