; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G007010 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007010
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRT_RNaseH domain-containing protein
Genome locationCmo_Chr12:5349582..5358386
RNA-Seq ExpressionCmoCh12G007010
SyntenyCmoCh12G007010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028064.1 hypothetical protein SDJN02_09244, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-2083.08Show/hide
Query:  FRFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINK
        F+ HVESFKL+MINL CGVI+IS K  C+EIFDQQESFKLDMIDLA GVI+ISNNVLALRYSINK
Subjt:  FRFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINK

PKI55427.1 hypothetical protein CRG98_024200 [Punica granatum]1.2e-0833.09Show/hide
Query:  EEFEDMFQDKE---IPPIRGTERKIDLIPRTVIPYKPAYRF-RFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLAL
        +E+ED+F ++    +PPIRG E +ID +P   IP + AYR      + F+  +  L     ++S        +D++    +  +      +     V+  
Subjt:  EEFEDMFQDKE---IPPIRGTERKIDLIPRTVIPYKPAYRF-RFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLAL

Query:  RYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ
             K+++GQ KLN+RHV+WVEFI+TF YVI+YKQ
Subjt:  RYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ

PKI60107.1 hypothetical protein CRG98_019515, partial [Punica granatum]3.1e-0932.86Show/hide
Query:  LATVGEEFEDMFQDKE---IPPIRGTERKIDLIPRTVIPYKPAYRFRFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNN
        +  + +E+ED+F ++    +PPIRG E +ID +P  +IP +PAYR     E+ +L          Q+      +E +                 +     
Subjt:  LATVGEEFEDMFQDKE---IPPIRGTERKIDLIPRTVIPYKPAYRFRFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNN

Query:  VLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ
        V+   +   K+++GQ KLN+RH +WVEFIETF YVI+YKQ
Subjt:  VLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ

RVW61908.1 hypothetical protein CK203_065503 [Vitis vinifera]2.8e-1031.28Show/hide
Query:  EEFEDMFQD---KEIPPIRGTERKIDLIPRTVIPYKPAYR--------FRFHVESFKLDMIN--LACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVI
        EE++D+F +     +PPIR  E +ID +P T IP +PAYR         + HV+  K   ++      + ++    S +E       F   + +      
Subjt:  EEFEDMFQD---KEIPPIRGTERKIDLIPRTVIPYKPAYR--------FRFHVESFKLDMIN--LACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVI

Query:  RISNNVLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQEAASL-ANILGGKGDKSRGVKGLNPYTTSKGYIY
             + AL      +++GQ KLNRRH KWVEFIETF YVIKYKQ   ++ A++L      +        +    GY+Y
Subjt:  RISNNVLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQEAASL-ANILGGKGDKSRGVKGLNPYTTSKGYIY

XP_040948651.1 uncharacterized protein LOC121217181, partial [Gossypium hirsutum]2.0e-0829.45Show/hide
Query:  EEFEDMFQDK---EIPPIRGTERKIDLIPRTVIPYKPAYRFRFHVESFKLDMIN--LACGVIQISIKCSCV--------------------------EIF
        ++F+D+F ++    +PPIRG E +IDL+P   IP +PAYR            +N  L  G ++ S+    V                            +
Subjt:  EEFEDMFQDK---EIPPIRGTERKIDLIPRTVIPYKPAYRFRFHVESFKLDMIN--LACGVIQISIKCSCV--------------------------EIF

Query:  DQQESFKLDMIDLACGVIRISNNVLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ
        D++    +  ++     +     V+   +   K++ GQ+KLN+RH KWVEF+E+F YVIKYKQ
Subjt:  DQQESFKLDMIDLACGVIRISNNVLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ

TrEMBL top hitse value%identityAlignment
A0A2I0JGN5 RT_RNaseH domain-containing protein5.8e-0933.09Show/hide
Query:  EEFEDMFQDKE---IPPIRGTERKIDLIPRTVIPYKPAYRF-RFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLAL
        +E+ED+F ++    +PPIRG E +ID +P   IP + AYR      + F+  +  L     ++S        +D++    +  +      +     V+  
Subjt:  EEFEDMFQDKE---IPPIRGTERKIDLIPRTVIPYKPAYRF-RFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLAL

Query:  RYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ
             K+++GQ KLN+RHV+WVEFI+TF YVI+YKQ
Subjt:  RYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ

A0A2I0JUV8 RT_RNaseH domain-containing protein (Fragment)1.5e-0932.86Show/hide
Query:  LATVGEEFEDMFQDKE---IPPIRGTERKIDLIPRTVIPYKPAYRFRFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNN
        +  + +E+ED+F ++    +PPIRG E +ID +P  +IP +PAYR     E+ +L          Q+      +E +                 +     
Subjt:  LATVGEEFEDMFQDKE---IPPIRGTERKIDLIPRTVIPYKPAYRFRFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNN

Query:  VLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ
        V+   +   K+++GQ KLN+RH +WVEFIETF YVI+YKQ
Subjt:  VLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ

A0A2N9G1C9 Uncharacterized protein1.4e-1028.38Show/hide
Query:  ESYLATVGEEFEDMFQDK---EIPPIRGTERKIDLIPRTVIPYKPAYRFR-----------FHVESFKLDMINLACGVIQISIKCSCVEIFDQQ---ESF
        E  L    EEFED+F ++   E+PPIRG E +ID +P   IP +PAYR               V+  K+  I        I+     +  F ++    S 
Subjt:  ESYLATVGEEFEDMFQDK---EIPPIRGTERKIDLIPRTVIPYKPAYRFR-----------FHVESFKLDMINLACGVIQISIKCSCVEIFDQQ---ESF

Query:  KLDMIDLAC-GVIRISNN----------VLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQEAASLANILGGKGDKSRGVKGLNPYTTSKGYI
        K    D     ++R              V+   +   K+++GQ KLN+RH +W+E+IETF YVI+YKQ                 G + +   T S+ Y+
Subjt:  KLDMIDLAC-GVIRISNN----------VLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQEAASLANILGGKGDKSRGVKGLNPYTTSKGYI

Query:  YIMANYGTLL-IEYLKGNHRED
         + +    +L  EY+K  + +D
Subjt:  YIMANYGTLL-IEYLKGNHRED

A0A2N9HBQ8 Integrase catalytic domain-containing protein5.8e-0931.25Show/hide
Query:  EEFEDMFQD---KEIPPIRGTERKIDLIPRTVIPYKPAYR-----------FRFHVESFKLDMINLACGVIQISIKCSCVEIFDQQ--------ESFKLD
        +E+ED+F +     +PPIRG E +ID +P   IP +PAYR            R  V+  K+  I        I+ +   +  F ++         ++  +
Subjt:  EEFEDMFQD---KEIPPIRGTERKIDLIPRTVIPYKPAYR-----------FRFHVESFKLDMINLACGVIQISIKCSCVEIFDQQ--------ESFKLD

Query:  MIDLACGVIRISNNVLALRYSIN------KYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ
        +  L   +    + +    + I+      K+++GQ KLNRRH +W+EFIETF YVIKYKQ
Subjt:  MIDLACGVIRISNNVLALRYSIN------KYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ

A0A438FPM9 RT_RNaseH domain-containing protein1.4e-1031.28Show/hide
Query:  EEFEDMFQD---KEIPPIRGTERKIDLIPRTVIPYKPAYR--------FRFHVESFKLDMIN--LACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVI
        EE++D+F +     +PPIR  E +ID +P T IP +PAYR         + HV+  K   ++      + ++    S +E       F   + +      
Subjt:  EEFEDMFQD---KEIPPIRGTERKIDLIPRTVIPYKPAYR--------FRFHVESFKLDMIN--LACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVI

Query:  RISNNVLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQEAASL-ANILGGKGDKSRGVKGLNPYTTSKGYIY
             + AL      +++GQ KLNRRH KWVEFIETF YVIKYKQ   ++ A++L      +        +    GY+Y
Subjt:  RISNNVLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQEAASL-ANILGGKGDKSRGVKGLNPYTTSKGYIY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTGAAGAAAAAAAGGAAGAGAGAGAGTTATTTGGCTACAGTTGGAGAGGAATTTGAAGACATGTTTCAAGATAAAGAAATACCTCCCATTAGAGGTACTGAACG
TAAAATAGACCTCATTCCAAGGACTGTCATTCCTTATAAGCCAGCTTATCGGTTTAGGTTTCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGA
TTCAAATCTCAATCAAGTGTTCTTGCGTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTT
CTTGCCTTGAGATATTCGATCAACAAGTATGTGGAGGGTCAAAGCAAACTGAACCGTAGACATGTAAAGTGGGTGGAATTTATTGAAACATTTTCGTATGTCATCAAGTA
TAAGCAAGAAGCTGCATCATTAGCAAACATATTAGGTGGCAAAGGCGATAAATCTAGAGGAGTTAAAGGATTAAATCCTTACACAACCTCAAAAGGTTACATTTACATAA
TGGCTAATTATGGTACCTTGTTGATCGAATATCTCAAGGGAAATCACCGAGAGGATATTGTCGACAGGAGGTTGTTGGAAGAAAGATACAATGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTGAAGAAAAAAAGGAAGAGAGAGAGTTATTTGGCTACAGTTGGAGAGGAATTTGAAGACATGTTTCAAGATAAAGAAATACCTCCCATTAGAGGTACTGAACG
TAAAATAGACCTCATTCCAAGGACTGTCATTCCTTATAAGCCAGCTTATCGGTTTAGGTTTCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGA
TTCAAATCTCAATCAAGTGTTCTTGCGTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTT
CTTGCCTTGAGATATTCGATCAACAAGTATGTGGAGGGTCAAAGCAAACTGAACCGTAGACATGTAAAGTGGGTGGAATTTATTGAAACATTTTCGTATGTCATCAAGTA
TAAGCAAGAAGCTGCATCATTAGCAAACATATTAGGTGGCAAAGGCGATAAATCTAGAGGAGTTAAAGGATTAAATCCTTACACAACCTCAAAAGGTTACATTTACATAA
TGGCTAATTATGGTACCTTGTTGATCGAATATCTCAAGGGAAATCACCGAGAGGATATTGTCGACAGGAGGTTGTTGGAAGAAAGATACAATGCGTAA
Protein sequenceShow/hide protein sequence
MKLKKKRKRESYLATVGEEFEDMFQDKEIPPIRGTERKIDLIPRTVIPYKPAYRFRFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNV
LALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQEAASLANILGGKGDKSRGVKGLNPYTTSKGYIYIMANYGTLLIEYLKGNHREDIVDRRLLEERYNA