CuGenDBv2

Gene ID	CmoCh12G007030
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Retrotransposable element Tf2
Genome location	Cmo_Chr12:5359413..5360609
RNA-Seq Expression	CmoCh12G007030
Synteny	CmoCh12G007030
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032923.1 polyprotein [Cucumis melo var. makuwa]

3.9e-57

34.76

Show/hide

Query:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFAVTPSR------PTVSSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS
        M++++YAMD  F  V+R +   +Q+   + +     P  PS    RP   T S          SS S  P  PS+YS  V P  F P P I  YF K  +
Subjt:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFAVTPSR------PTVSSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS

Query:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY
        I +  +EPE+D   + EV  + +P  F ++PEDL KTR FYE+ILVD+KS EI H+P +N+PSKI YSKL+IF+V+ P+YW Q  +  + FS PF P SY
Subjt:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY

Query:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED
        +YRDY  AW+                                                 S H F Q+I+ +P   T  F +YFQIPWI  WNFQ+  +  
Subjt:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED

Query:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE
          K + K++ IKWW+K+ Y+H ++  +K W   N HLQD++++    FL +K+ +++ LA  +++ +F  ++             +   +SP+ V + D+
Subjt:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE

Query:  ---DTIYAL--NDPFLDSQP
           D    L  NDPFLD+QP
Subjt:  ---DTIYAL--NDPFLDSQP

KAA0050443.1 polyprotein [Cucumis melo var. makuwa]

1.7e-57

Show/hide

Query:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSR----PTVSST-SKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS
        M++++YAMD  F  V+R     +Q+   + +     P  PS +  RP    TP++    PT SS+ S  P  PS+YS  V P  F P P I  YF K  +
Subjt:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSR----PTVSST-SKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS

Query:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY
        + +  +EPE+D   + EV  + +P  F ++PEDL KT  FYE+ILVD+KS EI H+P +N+PSKI YSKL+IF+V+ P+YW Q  +  + FS PF P SY
Subjt:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY

Query:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED
        +YRDY  AW+                                                 S H F Q+I+ +P   T  F +YFQIPWI  WNFQ+  +E+
Subjt:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED

Query:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE
          K + K+++IKWW+K+ Y+H ++  +K W   N HLQD++++    FL +K+ +++ LA  +++ +F  ++             +   +SP+ V + D+
Subjt:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE

Query:  ---DTIYAL--NDPFLDSQP
           D    L  NDPFLD+QP
Subjt:  ---DTIYAL--NDPFLDSQP

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

1.5e-56

34.52

Show/hide

Query:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSRPTV-----SSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS
        M++++YAMD  F  V+R +   +Q+   + +     P  PS +  RP    TP++        SS S  P  PS+YS  V P  F P P I  YF K  +
Subjt:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSRPTV-----SSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS

Query:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY
        + +  +EPE+D   + EV  + +P  F ++PEDL KTR FYE+ILVD+KS EI H+P +N+PSKI YSKL+IF+V+ P+YW Q  +  + FS PF P SY
Subjt:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY

Query:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED
        +YRDY  AW+                                                 S H F Q+I+ +P   T  F +YFQIPWI  WNFQ+  +  
Subjt:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED

Query:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLL-----------QEAASIGSTSSPSIVEE
          K + K+++IKWW+K+ Y+H ++  +K W   N HLQD++++    FL +K+ +++ LA  +++ +F  ++            +     S +S + V++
Subjt:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLL-----------QEAASIGSTSSPSIVEE

Query:  EDEDTIYAL--NDPFLDSQP
         D D    L  NDPFLD+QP
Subjt:  EDEDTIYAL--NDPFLDSQP

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

1.5e-56

34.52

Show/hide

Query:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSRPTV-----SSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS
        M++++YAMD  F  V+R +   +Q+   + +     P  PS +  RP    TP++        SS S  P  PS+YS  V P  F P P I  YF K  +
Subjt:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSRPTV-----SSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS

Query:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY
        + +  +EPE+D   + EV  + +P  F ++PEDL KTR FYE+ILVD+KS EI H+P +N+PSKI YSKL+IF+V+ P+YW Q  +  + FS PF P SY
Subjt:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY

Query:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED
        +YRDY  AW+                                                 S H F Q+I+ +P   T  F +YFQIPWI  WNFQ+  +  
Subjt:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED

Query:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE
          K + K+++IKWW+K+ Y+H ++  +K W   N HLQD++++    FL +K+ +++ LA  +++ +F  ++             +    SP+ V   D+
Subjt:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE

Query:  ---DTIYAL--NDPFLDSQP
           D    L  NDPFLD+QP
Subjt:  ---DTIYAL--NDPFLDSQP

TYK28077.1 polyprotein [Cucumis melo var. makuwa]

1.1e-56

34.52

Show/hide

Query:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFAVTPSR------PTVSSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS
        M++++YAMD  F  V+R +   +Q+   + +     P  PS    RP   T S          SS S  P  PS+YS  V P  F P P I  YF K  +
Subjt:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFAVTPSR------PTVSSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS

Query:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY
        + +  +EPE+D   + EV  + +P  F ++PEDL KTR FYE+ILVD+KS EI H+P +N+PSKI YSKL+IF+V+ P+YW Q  +  + FS PF P SY
Subjt:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY

Query:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED
        +YRDY  AW+                                                 S H F Q+I+ +P   T  F +YFQIPWI  WNFQ+  +  
Subjt:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED

Query:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE
          K + K++ IKWW+K+ Y+H ++  +K W   N HLQD++++    FL +K+ +++ LA  +++ +F  ++             +   +SP+ V + D+
Subjt:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE

Query:  ---DTIYAL--NDPFLDSQP
           D    L  NDPFLD+QP
Subjt:  ---DTIYAL--NDPFLDSQP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SR64 Polyprotein

1.9e-57

34.76

Show/hide

Query:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFAVTPSR------PTVSSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS
        M++++YAMD  F  V+R +   +Q+   + +     P  PS    RP   T S          SS S  P  PS+YS  V P  F P P I  YF K  +
Subjt:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFAVTPSR------PTVSSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS

Query:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY
        I +  +EPE+D   + EV  + +P  F ++PEDL KTR FYE+ILVD+KS EI H+P +N+PSKI YSKL+IF+V+ P+YW Q  +  + FS PF P SY
Subjt:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY

Query:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED
        +YRDY  AW+                                                 S H F Q+I+ +P   T  F +YFQIPWI  WNFQ+  +  
Subjt:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED

Query:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE
          K + K++ IKWW+K+ Y+H ++  +K W   N HLQD++++    FL +K+ +++ LA  +++ +F  ++             +   +SP+ V + D+
Subjt:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE

Query:  ---DTIYAL--NDPFLDSQP
           D    L  NDPFLD+QP
Subjt:  ---DTIYAL--NDPFLDSQP

A0A5A7U3G5 Polyprotein

8.4e-58

Show/hide

Query:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSR----PTVSST-SKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS
        M++++YAMD  F  V+R     +Q+   + +     P  PS +  RP    TP++    PT SS+ S  P  PS+YS  V P  F P P I  YF K  +
Subjt:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSR----PTVSST-SKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS

Query:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY
        + +  +EPE+D   + EV  + +P  F ++PEDL KT  FYE+ILVD+KS EI H+P +N+PSKI YSKL+IF+V+ P+YW Q  +  + FS PF P SY
Subjt:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY

Query:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED
        +YRDY  AW+                                                 S H F Q+I+ +P   T  F +YFQIPWI  WNFQ+  +E+
Subjt:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED

Query:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE
          K + K+++IKWW+K+ Y+H ++  +K W   N HLQD++++    FL +K+ +++ LA  +++ +F  ++             +   +SP+ V + D+
Subjt:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE

Query:  ---DTIYAL--NDPFLDSQP
           D    L  NDPFLD+QP
Subjt:  ---DTIYAL--NDPFLDSQP

A0A5A7UVN1 Retrotransposable element Tf2

7.1e-57

34.52

Show/hide

Query:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSRPTV-----SSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS
        M++++YAMD  F  V+R +   +Q+   + +     P  PS +  RP    TP++        SS S  P  PS+YS  V P  F P P I  YF K  +
Subjt:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSRPTV-----SSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS

Query:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY
        + +  +EPE+D   + EV  + +P  F ++PEDL KTR FYE+ILVD+KS EI H+P +N+PSKI YSKL+IF+V+ P+YW Q  +  + FS PF P SY
Subjt:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY

Query:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED
        +YRDY  AW+                                                 S H F Q+I+ +P   T  F +YFQIPWI  WNFQ+  +  
Subjt:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED

Query:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLL-----------QEAASIGSTSSPSIVEE
          K + K+++IKWW+K+ Y+H ++  +K W   N HLQD++++    FL +K+ +++ LA  +++ +F  ++            +     S +S + V++
Subjt:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLL-----------QEAASIGSTSSPSIVEE

Query:  EDEDTIYAL--NDPFLDSQP
         D D    L  NDPFLD+QP
Subjt:  EDEDTIYAL--NDPFLDSQP

A0A5A7V6D1 Retrotransposable element Tf2

7.1e-57

34.52

Show/hide

Query:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSRPTV-----SSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS
        M++++YAMD  F  V+R +   +Q+   + +     P  PS +  RP    TP++        SS S  P  PS+YS  V P  F P P I  YF K  +
Subjt:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFA-VTPSRPTV-----SSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS

Query:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY
        + +  +EPE+D   + EV  + +P  F ++PEDL KTR FYE+ILVD+KS EI H+P +N+PSKI YSKL+IF+V+ P+YW Q  +  + FS PF P SY
Subjt:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY

Query:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED
        +YRDY  AW+                                                 S H F Q+I+ +P   T  F +YFQIPWI  WNFQ+  +  
Subjt:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED

Query:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE
          K + K+++IKWW+K+ Y+H ++  +K W   N HLQD++++    FL +K+ +++ LA  +++ +F  ++             +    SP+ V   D+
Subjt:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE

Query:  ---DTIYAL--NDPFLDSQP
           D    L  NDPFLD+QP
Subjt:  ---DTIYAL--NDPFLDSQP

A0A5D3DW87 Polyprotein

5.4e-57

34.52

Show/hide

Query:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFAVTPSR------PTVSSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS
        M++++YAMD  F  V+R +   +Q+   + +     P  PS    RP   T S          SS S  P  PS+YS  V P  F P P I  YF K  +
Subjt:  MTSDSYAMDASFTLVTRSKARLSQKQAEVIT-----PTRPSASSTRPFAVTPSR------PTVSSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVS

Query:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY
        + +  +EPE+D   + EV  + +P  F ++PEDL KTR FYE+ILVD+KS EI H+P +N+PSKI YSKL+IF+V+ P+YW Q  +  + FS PF P SY
Subjt:  IPEALVEPEYDDLKIGEVIKKAYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSY

Query:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED
        +YRDY  AW+                                                 S H F Q+I+ +P   T  F +YFQIPWI  WNFQ+  +  
Subjt:  SYRDYQMAWF-----------------------------------------------NESLHYFVQNIFKTPFPLTMCFYVYFQIPWILTWNFQIKETED

Query:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE
          K + K++ IKWW+K+ Y+H ++  +K W   N HLQD++++    FL +K+ +++ LA  +++ +F  ++             +   +SP+ V + D+
Subjt:  QIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAA--------SIGSTSSPSIVEEEDE

Query:  ---DTIYAL--NDPFLDSQP
           D    L  NDPFLD+QP
Subjt:  ---DTIYAL--NDPFLDSQP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACATCCGACAGCTACGCGATGGATGCTAGTTTCACATTGGTGACCAGATCTAAAGCAAGGCTTTCTCAAAAACAGGCAGAGGTTATCACTCCGACGAGGCCTTCTGC
CTCTTCAACACGGCCATTTGCCGTTACTCCATCGAGACCTACTGTCTCTTCCACTTCAAAGGGACCCTCTGTCCCCTCAACCTACTCGGACGCGGTTGTTCCCATTCGAT
TCTCTCCAGTTCCTGAAATCAGGACCTATTTTCAAAAATTTGTGTCTATACCAGAAGCTCTGGTAGAACCAGAATACGACGACCTAAAAATTGGCGAAGTCATTAAAAAG
GCCTATCCATCGAGATTCTTTTATATCCCAGAAGATCTTTATAAAACCAGAAGGTTTTATGAATTCATTCTAGTCGACACAAAGTCCATTGAAATTATTCATATCCCGAG
TCGCAATAATCCTTCGAAAATTGCGTATTCAAAATTAAAAATTTTCAAAGTCATGAACCCGACGTATTGGAATCAAGATCCATACACAGAGAAGACTTTTTCAAAACCTT
TTGTTCCTCATTCTTACTCATACAGAGACTATCAGATGGCATGGTTCAATGAATCGTTGCACTACTTCGTTCAAAATATATTCAAAACCCCATTTCCATTAACCATGTGC
TTTTATGTATACTTCCAAATTCCTTGGATTTTAACTTGGAATTTTCAAATTAAAGAAACCGAAGACCAAATAAAACAGGTCTTTAAAACTATCAAAATCAAATGGTGGGA
TAAATATACTTATACCCACGCAGACATCAAAGCGGTAAAGGTCTGGCTATCTGAGAATGGCCACCTTCAGGATTTATCCAAGAAGAGGACCTCCGAATTTCTTAATTCAA
AGTCGAAGCTCCTCGCTGCATTAGCCCAGACAACTTCTGAAGCTGATTTTCAAAAGCTTCTTCAAGAGGCCGCATCAATCGGTTCGACGTCTTCTCCTTCTATTGTAGAA
GAAGAAGATGAAGACACGATTTATGCTCTCAATGATCCATTTTTGGATTCTCAACCACCTTTGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

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MTSDSYAMDASFTLVTRSKARLSQKQAEVITPTRPSASSTRPFAVTPSRPTVSSTSKGPSVPSTYSDAVVPIRFSPVPEIRTYFQKFVSIPEALVEPEYDDLKIGEVIKK
AYPSRFFYIPEDLYKTRRFYEFILVDTKSIEIIHIPSRNNPSKIAYSKLKIFKVMNPTYWNQDPYTEKTFSKPFVPHSYSYRDYQMAWFNESLHYFVQNIFKTPFPLTMC
FYVYFQIPWILTWNFQIKETEDQIKQVFKTIKIKWWDKYTYTHADIKAVKVWLSENGHLQDLSKKRTSEFLNSKSKLLAALAQTTSEADFQKLLQEAASIGSTSSPSIVE
EEDEDTIYALNDPFLDSQPPL

CmoCh12G007030 (gene) of Cucurbita moschata (Rifu) v1 genome