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CmoCh12G007040 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007040
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPolyprotein
Genome locationCmo_Chr12:5361542..5361966
RNA-Seq ExpressionCmoCh12G007040
SyntenyCmoCh12G007040
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058433.1 Enzymatic polyprotein [Cucumis melo var. makuwa]9.2e-2445.39Show/hide
Query:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK
        MNR+L+  C AEIND  ++ L++  ++P     F   +  ++ R V                          L++RI+  KVF KFDMK GF ++QI   
Subjt:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK

Query:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        D YK  FNVPFGQY+WNVMPFGLKNA SEFQKIMNDIFN +
Subjt:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

PKI79478.1 hypothetical protein CRG98_000109 [Punica granatum]3.2e-2446.81Show/hide
Query:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK
        MN+EL   CK EI +   + L+   ++P     F      +  R V                       +  L+QR+ + K+F KFDMKSGF +IQI+EK
Subjt:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK

Query:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        DKYK AF VPFGQYEWNVMPFGLKNA SEFQKIMNDIF  +
Subjt:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

PRQ48027.1 putative nucleotidyltransferase, Ribonuclease H [Rosa chinensis]1.4e-2447.52Show/hide
Query:  MNRELLTFCKAEINDFCRRVLLDRQRAP----------------GHVRLFTSTTKQRRNVE---------SHLIQRISNVKVFPKFDMKSGFAKIQILEK
        MN ELL +CK EI D   + L+   ++P                G  RL  +     + ++           L++R+    VF KFDMKSGF +IQI EK
Subjt:  MNRELLTFCKAEINDFCRRVLLDRQRAP----------------GHVRLFTSTTKQRRNVE---------SHLIQRISNVKVFPKFDMKSGFAKIQILEK

Query:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        DKYK AFNVPFG YEWNVMPFGLKNA SEFQ +MNDIFNP+
Subjt:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

RDX80013.1 hypothetical protein CR513_39485, partial [Mucuna pruriens]1.9e-2445.39Show/hide
Query:  MNRELLTFCKAEINDFCRRVLLDRQRAP----------------GHVRLFTSTTKQRRNV---------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK
        MN E+  +C+ EI D   + L+ + ++P                G  RL  +     + +         +  L+ R+++ K+F KFDMKSGF +IQI E 
Subjt:  MNRELLTFCKAEINDFCRRVLLDRQRAP----------------GHVRLFTSTTKQRRNV---------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK

Query:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        D+YK AF VPFGQYEWNVMPFGLKNA SEFQKIMNDIFNP+
Subjt:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

XP_033139453.1 uncharacterized protein LOC117131412 isoform X1 [Brassica rapa]3.8e-2546.81Show/hide
Query:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK
        MN+ELL  CK EIND   + L+   ++P     F   +  ++ R +                       +  L++R+ N K++ KFDMKSGF +IQI EK
Subjt:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK

Query:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        DKYK AF VPFG YEWNVMPFGLKNA SEFQ IMNDIFN +
Subjt:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

TrEMBL top hitse value%identityAlignment
A0A1J3K7Z6 Enzymatic polyprotein (Fragment)5.3e-2546.1Show/hide
Query:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK
        MN++LL  CK EIND  ++ L+   ++P     F   +  ++ R V                       +  L++R+ + K++ KFDMKSGF +IQI EK
Subjt:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK

Query:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        DKYK AF VPFG YEWNVMPFGLKNA SEFQ IMNDIFN +
Subjt:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

A0A2I0LFL5 Reverse transcriptase domain-containing protein1.5e-2446.81Show/hide
Query:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK
        MN+EL   CK EI +   + L+   ++P     F      +  R V                       +  L+QR+ + K+F KFDMKSGF +IQI+EK
Subjt:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK

Query:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        DKYK AF VPFGQYEWNVMPFGLKNA SEFQKIMNDIF  +
Subjt:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

A0A2P6RNM1 Putative nucleotidyltransferase, Ribonuclease H6.9e-2547.52Show/hide
Query:  MNRELLTFCKAEINDFCRRVLLDRQRAP----------------GHVRLFTSTTKQRRNVE---------SHLIQRISNVKVFPKFDMKSGFAKIQILEK
        MN ELL +CK EI D   + L+   ++P                G  RL  +     + ++           L++R+    VF KFDMKSGF +IQI EK
Subjt:  MNRELLTFCKAEINDFCRRVLLDRQRAP----------------GHVRLFTSTTKQRRNVE---------SHLIQRISNVKVFPKFDMKSGFAKIQILEK

Query:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        DKYK AFNVPFG YEWNVMPFGLKNA SEFQ +MNDIFNP+
Subjt:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

A0A371FPK7 CCHC-type domain-containing protein (Fragment)9.0e-2545.39Show/hide
Query:  MNRELLTFCKAEINDFCRRVLLDRQRAP----------------GHVRLFTSTTKQRRNV---------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK
        MN E+  +C+ EI D   + L+ + ++P                G  RL  +     + +         +  L+ R+++ K+F KFDMKSGF +IQI E 
Subjt:  MNRELLTFCKAEINDFCRRVLLDRQRAP----------------GHVRLFTSTTKQRRNV---------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK

Query:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        D+YK AF VPFGQYEWNVMPFGLKNA SEFQKIMNDIFNP+
Subjt:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

A0A5A7URD4 Enzymatic polyprotein4.5e-2445.39Show/hide
Query:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK
        MNR+L+  C AEIND  ++ L++  ++P     F   +  ++ R V                          L++RI+  KVF KFDMK GF ++QI   
Subjt:  MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLF--TSTTKQRRNV-----------------------ESHLIQRISNVKVFPKFDMKSGFAKIQILEK

Query:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        D YK  FNVPFGQY+WNVMPFGLKNA SEFQKIMNDIFN +
Subjt:  DKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

SwissProt top hitse value%identityAlignment
Q6XKE6 Genome polyprotein5.5e-1147.06Show/hide
Query:  LIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNP
        L   +S  K+F KFD+KSGF ++ I   ++ K  F +P   ++W VMPFGLK A S FQK M  IF P
Subjt:  LIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNP

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.1e-1147.76Show/hide
Query:  HLIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIF
        +L+ RI N ++F   D+ SG+ +I +  KD+YK AF  P G+YE+ VMPFGL NA S F + M D F
Subjt:  HLIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIF

Q89703 Putative enzymatic polyprotein5.5e-1146.38Show/hide
Query:  LIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF
        LI R    + + KFD KSGF  I++ E  K   AF VP G Y+W V+PFG  N+ S FQ+ M+ IF P+
Subjt:  LIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNPF

Q91DM0 Genome polyprotein5.5e-1147.06Show/hide
Query:  LIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNP
        L   +S  K+F KFD+KSGF ++ I   ++ K  F +P   ++W VMPFGLK A S FQK M  IF P
Subjt:  LIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIFNP

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.1e-1147.76Show/hide
Query:  HLIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIF
        +L+ RI N ++F   D+ SG+ +I +  KD+YK AF  P G+YE+ VMPFGL NA S F + M D F
Subjt:  HLIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMNDIF

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGAGAATTACTAACATTCTGCAAAGCAGAAATCAATGACTTTTGCAGAAGGGTCTTATTAGACCGTCAAAGAGCCCCTGGTCATGTGCGGCTTTTTACGTCAAC
AACCAAGCAAAGAAGAAACGTGGAGTCCCATTTAATACAAAGAATTTCAAATGTAAAAGTATTTCCAAAATTTGATATGAAATCTGGATTTGCCAAAATCCAGATTTTGG
AAAAAGACAAGTATAAAGCGGCTTTCAATGTCCCTTTCGGACAATACGAATGGAACGTTATGCCATTTGGGCTAAAAAACGCTCAATCCGAATTTCAAAAGATTATGAAC
GATATTTTCAATCCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAGAGAATTACTAACATTCTGCAAAGCAGAAATCAATGACTTTTGCAGAAGGGTCTTATTAGACCGTCAAAGAGCCCCTGGTCATGTGCGGCTTTTTACGTCAAC
AACCAAGCAAAGAAGAAACGTGGAGTCCCATTTAATACAAAGAATTTCAAATGTAAAAGTATTTCCAAAATTTGATATGAAATCTGGATTTGCCAAAATCCAGATTTTGG
AAAAAGACAAGTATAAAGCGGCTTTCAATGTCCCTTTCGGACAATACGAATGGAACGTTATGCCATTTGGGCTAAAAAACGCTCAATCCGAATTTCAAAAGATTATGAAC
GATATTTTCAATCCTTTCTAA
Protein sequenceShow/hide protein sequence
MNRELLTFCKAEINDFCRRVLLDRQRAPGHVRLFTSTTKQRRNVESHLIQRISNVKVFPKFDMKSGFAKIQILEKDKYKAAFNVPFGQYEWNVMPFGLKNAQSEFQKIMN
DIFNPF