CuGenDBv2

Gene ID	CmoCh12G007140
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Cytochrome c biogenesis B
Genome location	Cmo_Chr12:5420233..5426468
RNA-Seq Expression	CmoCh12G007140
Synteny	CmoCh12G007140
Gene Ontology terms	GO:0015886 - heme transport (biological process) GO:0017004 - cytochrome complex assembly (biological process) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0015232 - heme transporter activity (molecular function)
InterPro domains	IPR003544 - Cytochrome c-type biogenesis protein CcmB

Homology

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GenBank top hits

e value

%identity

Alignment

AEN56106.1 cytochrome c biogenesis B [Cucumis melo subsp. melo]

1.3e-32

91.46

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP
        K +LLQLVGHRVIQISC+F GFPMFKL YQFGRSGMDRLNILLGS VLTLLCGIHSRSALGITSSRGWNSS+NPTTSPTSLP
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP

AUD38629.1 cytochrome c maturase subunit B [Argostemma yappii]

3.1e-31

89.02

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP
        K +LLQLVGHRVIQISCVF GFPM +LLYQFGRSGMDRLNILLGS VLTLLCGIHS SALGITSS GWNSS+NPTTSPTSLP
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP

CAB4093308.1 unnamed protein product [Lactuca saligna]

3.0e-50

82.84

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYR
        K +LLQLVGHRVIQIS VF GFPM +L YQFGRSGMDRLNI LGS VLT LCGIHSRSALGITSS G NSS+NP+TSPTSLPQPFLVPLLKQNGFMF +R
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYR

Query:  LVIPPRSSLFFQLRSRLVYKIEWLICLRTLDSIV
        LVIP RS LF Q RSRLV+KIEW I LRTLDSIV
Subjt:  LVIPPRSSLFFQLRSRLVYKIEWLICLRTLDSIV

YP_009252200.1 CcmB [Allium cepa]

9.0e-31

89.02

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP
        K +LLQLVGHRVIQISCVF GFPM +L YQF RSGMDRLNILLGS VLTLLCGIHSRSALGITSS GWNSSKNPTTSPTSLP
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP

YP_009913630.1 cytochrome c biogenesis B [Luffa acutangula]

2.8e-32

91.46

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP
        K +LLQLVGHRVIQISCVF GFPM KL YQFGRSGMDRLNILLGS VLTLLCGIHSRSALGITSSRGWNSS+NPTTSPTSLP
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP

TrEMBL top hits

e value

%identity

Alignment

A0A3Q9CS08 Cytochrome c biogenesis B

6.1e-33

91.46

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP
        K +LLQLVGHRVIQISC+F GFPMFKL YQFGRSGMDRLNILLGS VLTLLCGIHSRSALGITSSRGWNSS+NPTTSPTSLP
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP

A0A6N2N4H3 Uncharacterized protein

1.4e-40

76.56

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYR
        K +LLQLVGHRVIQISCVF GFPM +L YQ  RS MD L   + S VLTL+CGIHSRSALGITSS GWNSS+NPTTSPT LPQ FLVPLLKQN FMF +R
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYR

Query:  LVIPPRSSLFFQLRSRLVYKIEWLICLR
        LVI  RS LFFQ RSRLVYKIEW I LR
Subjt:  LVIPPRSSLFFQLRSRLVYKIEWLICLR

A0A6S7MXW4 Uncharacterized protein

1.4e-50

82.84

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYR
        K +LLQLVGHRVIQIS VF GFPM +L YQFGRSGMDRLNI LGS VLT LCGIHSRSALGITSS G NSS+NP+TSPTSLPQPFLVPLLKQNGFMF +R
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYR

Query:  LVIPPRSSLFFQLRSRLVYKIEWLICLRTLDSIV
        LVIP RS LF Q RSRLV+KIEW I LRTLDSIV
Subjt:  LVIPPRSSLFFQLRSRLVYKIEWLICLRTLDSIV

A0A7D6C7C3 Cytochrome c biogenesis B

1.4e-32

91.46

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP
        K +LLQLVGHRVIQISCVF GFPM KL YQFGRSGMDRLNILLGS VLTLLCGIHSRSALGITSSRGWNSS+NPTTSPTSLP
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP

G3EU22 Cytochrome c biogenesis B

6.1e-33

91.46

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP
        K +LLQLVGHRVIQISC+F GFPMFKL YQFGRSGMDRLNILLGS VLTLLCGIHSRSALGITSSRGWNSS+NPTTSPTSLP
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP

SwissProt top hits

e value

%identity

Alignment

P38454 Putative cytochrome c biogenesis ccmB-like mitochondrial protein

2.0e-17

58.54

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP
        K +L +L GH V+QIS VF  FP+ +LLYQF +S M+   I++GSQ+ TL+CGIHS  ALGITS+ GWNS +N TT PT LP
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP

P93280 Putative cytochrome c biogenesis ccmB-like mitochondrial protein

8.8e-29

60.83

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQN-------
        K +LLQLVGH VIQISCVF GFPM +LLYQFGRSGMD LNILLGS VLTLLCGIHS  ALGITSS GWNSS+N TT PT LP       ++         
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQN-------

Query:  -GFMFLYRLVIPPRSSLFFQ
         G+ FL+  + P   S+  Q
Subjt:  -GFMFLYRLVIPPRSSLFFQ

Arabidopsis top hits

e value

%identity

Alignment

ATMG00110.1 cytochrome C biogenesis 206

2.3e-32

85.37

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Query:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP
        K +LLQLVGHRVIQIS VF GFPM +L YQFGRSGMDRLNI LGS VLTLLCGIHSRSALGITSS GWNSS+NPTTSPT LP
Subjt:  KHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLP

Sequences

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CDS sequence

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ATGTTTTCGAAACACATACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTGTTTTCTCTGGTTTTCCTATGTTCAAACTTCTGTACCAATTTGGTCGATC
CGGAATGGATCGGTTAAACATTCTATTAGGGAGCCAGGTCTTGACTCTGTTGTGTGGTATTCATTCTCGTTCGGCTCTTGGAATCACATCCAGTCGTGGTTGGAATAGCT
CGAAAAATCCAACCACTTCACCTACTTCATTGCCCCAACCCTTTCTCGTACCTCTATTGAAACAGAATGGTTTCATGTTCCTTTATCGATTGGTTATTCCTCCCCGTTCG
TCTCTCTTTTTCCAATTGCGGTCTCGATTAGTTTACAAGATTGAATGGCTAATTTGCCTCCGGACCCTAGATTCGATTGTGGTATCCCGAGATAGATGGAATTCCTCCCG
GGAACACACGAAAGAAATATATGAACTGGAATCCCGACAGGTCTCCACTTTAGTCTACTTCATCACAGATATAGTAGGCGAGAAAGAAGAGAAAAGCAAGATCAGATTTG
AGATGTTGGTACCAATCACAAGCATGATTGAGCGGCCAAAGAACGTCGACCAAATGATAACCGCCTATAATGCTGGAATTTGCAAAGCTAGAAGTCCTTCTAGAATCCTT
GCAAAACGCTCACAGAGAAAGCTAACTTAA

mRNA sequence

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Protein sequence

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MFSKHILLQLVGHRVIQISCVFSGFPMFKLLYQFGRSGMDRLNILLGSQVLTLLCGIHSRSALGITSSRGWNSSKNPTTSPTSLPQPFLVPLLKQNGFMFLYRLVIPPRS
SLFFQLRSRLVYKIEWLICLRTLDSIVVSRDRWNSSREHTKEIYELESRQVSTLVYFITDIVGEKEEKSKIRFEMLVPITSMIERPKNVDQMITAYNAGICKARSPSRIL
AKRSQRKLT

CmoCh12G007140 (gene) of Cucurbita moschata (Rifu) v1 genome