; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G007150 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007150
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase
Genome locationCmo_Chr12:5429246..5431916
RNA-Seq ExpressionCmoCh12G007150
SyntenyCmoCh12G007150
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022933231.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111440131 [Cucurbita moschata]6.0e-0987.18Show/hide
Query:  VLGRNHHSEEAMWESEEKIREKYPELVQEFKTFEDESSF
        VL RNHHSEEAMWE E++IREKYPELVQEF+TFEDESSF
Subjt:  VLGRNHHSEEAMWESEEKIREKYPELVQEFKTFEDESSF
XP_022951914.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111454654 [Cucurbita moschata]6.9e-0569.23Show/hide
Query:  VLGRNHHSEEAMWESEEKIREKYPELVQEFKTFEDESSF
        VL RNH  EEA WE EE+I++KYPEL+ EF+TFEDES F
Subjt:  VLGRNHHSEEAMWESEEKIREKYPELVQEFKTFEDESSF
TrEMBL top hitse value%identityAlignment
A0A6J1EYH9 Reverse transcriptase2.9e-0987.18Show/hide
Query:  VLGRNHHSEEAMWESEEKIREKYPELVQEFKTFEDESSF
        VL RNHHSEEAMWE E++IREKYPELVQEF+TFEDESSF
Subjt:  VLGRNHHSEEAMWESEEKIREKYPELVQEFKTFEDESSF
A0A6J1GK52 Reverse transcriptase3.3e-0569.23Show/hide
Query:  VLGRNHHSEEAMWESEEKIREKYPELVQEFKTFEDESSF
        VL RNH  EEA WE EE+I++KYPEL+ EF+TFEDES F
Subjt:  VLGRNHHSEEAMWESEEKIREKYPELVQEFKTFEDESSF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCAATACCTTCCGGAACAGGAATAGAATGCTGCTGTAAAAAACGGAGGCGGAATTACTGTGAAGAAAAAGTCTCATGCAGGATAGCTGCCGCTAACAAAATTCA
CACAGTTTATAGAAACAACACAGTATTGGGGCGGAATCACCACAGCGAGGAAGCCATGTGGGAGAGTGAGGAAAAAATAAGAGAAAAATACCCCGAGCTAGTACAAGAGT
TTAAGACTTTCGAGGATGAAAGTTCTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTCAATACCTTCCGGAACAGGAATAGAATGCTGCTGTAAAAAACGGAGGCGGAATTACTGTGAAGAAAAAGTCTCATGCAGGATAGCTGCCGCTAACAAAATTCA
CACAGTTTATAGAAACAACACAGTATTGGGGCGGAATCACCACAGCGAGGAAGCCATGTGGGAGAGTGAGGAAAAAATAAGAGAAAAATACCCCGAGCTAGTACAAGAGT
TTAAGACTTTCGAGGATGAAAGTTCTTTTTAG
Protein sequenceShow/hide protein sequence
MNSIPSGTGIECCCKKRRRNYCEEKVSCRIAAANKIHTVYRNNTVLGRNHHSEEAMWESEEKIREKYPELVQEFKTFEDESSF