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CmoCh12G007160 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007160
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCmo_Chr12:5435026..5439628
RNA-Seq ExpressionCmoCh12G007160
SyntenyCmoCh12G007160
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042227.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.4e-2254.89Show/hide
Query:  AALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAATREILIVFLPVLLPARGRKVQWVF
        AALW+ LL LPLT ALAACP  +      +       D   I      D EGV+ET R+SRCE           AATREILI+FLPV LPARGRKVQW+F
Subjt:  AALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAATREILIVFLPVLLPARGRKVQWVF

Query:  LPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCE
        L G EKVKLWAGC+VS  L   KIEP  FNR +
Subjt:  LPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCE

KAA0064098.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.4e-2255.22Show/hide
Query:  AALWARLLGLPLTSALAACPLPS-PSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAATREILIVFLPVLLPARGRKVQWV
        AALW+ LL LPLT ALAACP  +    GE +       D   I      D EGV+ET R+SRCE           AATREILI+FLPV LP RGRKVQW+
Subjt:  AALWARLLGLPLTSALAACPLPS-PSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAATREILIVFLPVLLPARGRKVQWV

Query:  FLPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCE
        FL G EKVKLWAGC+VS  L   KIEP  FNR +
Subjt:  FLPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCE

KAG6573513.1 hypothetical protein SDJN03_27400, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4376.52Show/hide
Query:  LEFVYSSIRQSKSPSPYLNVATCNHRAAAALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCE---------
        L F++++  QSK PS YLN+ATCNH  AAALWA LLGLPLTSALAACPLPSPSFGEY FHNTGSSDSYSIAMLYSFD+EGVVETLRESRCE         
Subjt:  LEFVYSSIRQSKSPSPYLNVATCNHRAAAALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCE---------

Query:  GNLLDFELVLTAATREILIVFLPVLLPARGRK
        GNLLD ELV TAAT EILIVFLPVLL   GR+
Subjt:  GNLLDFELVLTAATREILIVFLPVLLPARGRK

KAG6585891.1 hypothetical protein SDJN03_18624, partial [Cucurbita argyrosperma subsp. sororia]2.9e-3783.17Show/hide
Query:  SKRREANILEFVYSSIRQSKSPSPYLNVATCNHRAAAALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEG
        ++ +E  ++  +Y+   QSKSPSPYLNVATCNHRAAAALWARLLGLPLTSALAACPLPSPSFGEYSFHNT SSDSYSIAMLYSFDNEGVVETLRESRCEG
Subjt:  SKRREANILEFVYSSIRQSKSPSPYLNVATCNHRAAAALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEG

Query:  N
        +
Subjt:  N

KAG6590352.1 hypothetical protein SDJN03_15775, partial [Cucurbita argyrosperma subsp. sororia]9.2e-3693.98Show/hide
Query:  SKSPSPYLNVATCNHRAAAALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGN
        SKSPSPYLN+ATCNH AAAALWARLLGLPLTSALAACPLPSPSFGEY FHNTGSSDSYSIAMLYSFD+EGVVETLRESRCEG+
Subjt:  SKSPSPYLNVATCNHRAAAALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGN

TrEMBL top hitse value%identityAlignment
A0A5A7TKL6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-2254.89Show/hide
Query:  AALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAATREILIVFLPVLLPARGRKVQWVF
        AALW+ LL LPLT ALAACP  +      +       D   I      D EGV+ET R+SRCE           AATREILI+FLPV LPARGRKVQW+F
Subjt:  AALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAATREILIVFLPVLLPARGRKVQWVF

Query:  LPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCE
        L G EKVKLWAGC+VS  L   KIEP  FNR +
Subjt:  LPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCE

A0A5A7URS5 Uncharacterized protein1.8e-2153.38Show/hide
Query:  AALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAATREILIVFLPVLLPARGRKVQWVF
        AALW+ LL LPLT AL AC   +      +       D   I      D EGV+ET R+SRCE           AATREILI+FLPV LPARGRKVQW+F
Subjt:  AALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAATREILIVFLPVLLPARGRKVQWVF

Query:  LPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCE
        L G EKVKLWAGC+VS  L   KIEP  FNR +
Subjt:  LPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCE

A0A5A7V903 Retrovirus-related Pol polyprotein from transposon TNT 1-941.6e-2255.22Show/hide
Query:  AALWARLLGLPLTSALAACPLPS-PSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAATREILIVFLPVLLPARGRKVQWV
        AALW+ LL LPLT ALAACP  +    GE +       D   I      D EGV+ET R+SRCE           AATREILI+FLPV LP RGRKVQW+
Subjt:  AALWARLLGLPLTSALAACPLPS-PSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAATREILIVFLPVLLPARGRKVQWV

Query:  FLPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCE
        FL G EKVKLWAGC+VS  L   KIEP  FNR +
Subjt:  FLPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACCCTCCACAGCCCCCCGGGGTCAAAGAACATTTTCGTAAAGAGAAGCTCCGAAGGCAACCTATGCCCTCATTCCATTCCATTCCATTTTCTTGTAGT
TTTCTTATGGGCTTCATCCCGTCCGTTCCATTACATCTAGTGCATGTCATACTTGAGGGTTCCGGTGAAGTAGCTGCTCAGGTCATATCAGTTCAGTCGCTTGAC
CCTCTGATCCTCCAGTTTACCTTCCTTGTTCAATCAGTAGGAGAAGGAGGGACAAGAACGAAACAAGGAGCGCAGCAACAAGACTCGAAGAGGAGAGAAGCGAAC
ATCCTTGAATTTGTTTACAGCTCAATCAGGCAGTCGAAGTCCCCGTCCCCCTATCTCAATGTGGCAACGTGTAACCATAGAGCTGCCGCTGCCCTTTGGGCACGC
CTCCTAGGCTTACCACTCACCTCTGCTCTTGCAGCATGCCCTCTTCCTTCCCCTTCCTTCGGGGAATACAGCTTTCATAATACGGGAAGTAGCGATAGCTATTCG
ATCGCTATGCTATATTCTTTCGATAACGAAGGCGTGGTTGAGACTCTAAGAGAAAGTCGATGCGAAGGTAACCTCTTGGATTTTGAGTTAGTTCTAACAGCTGCC
ACACGTGAGATCCTGATCGTCTTCCTCCCTGTGTTGTTGCCCGCTAGGGGAAGAAAAGTTCAGTGGGTTTTCCTTCCAGGACCGGAGAAGGTCAAACTCTGGGCG
GGCTGCCAGGTTTCGTCTACGCTATGGTTGAACAAGATTGAACCTTTTTTCTTCAACCGATGTGAACGACTTTCCTTTCTTGGTCAACTGAGTGAGGGGAGTGGC
GATCTTGGCGAAATCCTGTACAAACCGCCGATAATACCCTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGACCCTCCACAGCCCCCCGGGGTCAAAGAACATTTTCGTAAAGAGAAGCTCCGAAGGCAACCTATGCCCTCATTCCATTCCATTCCATTTTCTTGTAGT
TTTCTTATGGGCTTCATCCCGTCCGTTCCATTACATCTAGTGCATGTCATACTTGAGGGTTCCGGTGAAGTAGCTGCTCAGGTCATATCAGTTCAGTCGCTTGAC
CCTCTGATCCTCCAGTTTACCTTCCTTGTTCAATCAGTAGGAGAAGGAGGGACAAGAACGAAACAAGGAGCGCAGCAACAAGACTCGAAGAGGAGAGAAGCGAAC
ATCCTTGAATTTGTTTACAGCTCAATCAGGCAGTCGAAGTCCCCGTCCCCCTATCTCAATGTGGCAACGTGTAACCATAGAGCTGCCGCTGCCCTTTGGGCACGC
CTCCTAGGCTTACCACTCACCTCTGCTCTTGCAGCATGCCCTCTTCCTTCCCCTTCCTTCGGGGAATACAGCTTTCATAATACGGGAAGTAGCGATAGCTATTCG
ATCGCTATGCTATATTCTTTCGATAACGAAGGCGTGGTTGAGACTCTAAGAGAAAGTCGATGCGAAGGTAACCTCTTGGATTTTGAGTTAGTTCTAACAGCTGCC
ACACGTGAGATCCTGATCGTCTTCCTCCCTGTGTTGTTGCCCGCTAGGGGAAGAAAAGTTCAGTGGGTTTTCCTTCCAGGACCGGAGAAGGTCAAACTCTGGGCG
GGCTGCCAGGTTTCGTCTACGCTATGGTTGAACAAGATTGAACCTTTTTTCTTCAACCGATGTGAACGACTTTCCTTTCTTGGTCAACTGAGTGAGGGGAGTGGC
GATCTTGGCGAAATCCTGTACAAACCGCCGATAATACCCTGCTAG
Protein sequenceShow/hide protein sequence
MADPPQPPGVKEHFRKEKLRRQPMPSFHSIPFSCSFLMGFIPSVPLHLVHVILEGSGEVAAQVISVQSLDPLILQFTFLVQSVGEGGTRTKQGAQQQDSKRREAN
ILEFVYSSIRQSKSPSPYLNVATCNHRAAAALWARLLGLPLTSALAACPLPSPSFGEYSFHNTGSSDSYSIAMLYSFDNEGVVETLRESRCEGNLLDFELVLTAA
TREILIVFLPVLLPARGRKVQWVFLPGPEKVKLWAGCQVSSTLWLNKIEPFFFNRCERLSFLGQLSEGSGDLGEILYKPPIIPC