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CmoCh12G007210 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007210
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionProtein Ycf2
Genome locationCmo_Chr12:5510041..5510395
RNA-Seq ExpressionCmoCh12G007210
SyntenyCmoCh12G007210
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR008543 - Uncharacterised protein family Ycf2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4284022.1 unnamed protein product [Prunus armeniaca]4.5e-3270.8Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTERILLQDPFVL------------
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKC SGY S+SRLFTER    +  +L            
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTERILLQDPFVL------------

Query:  -----FSLTDGKN
             FSLTDG+N
Subjt:  -----FSLTDGKN

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]1.0e-3192.41Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKCFSGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

QJR53001.1 hypothetical protein RF2 [Herpetospermum pedunculosum]1.0e-3192.41Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKCFSGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

YP_009752033.1 Ycf2 protein [Cionosicys macranthus]1.0e-3192.41Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKCFSGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]1.0e-3192.41Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKCFSGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

TrEMBL top hitse value%identityAlignment
A0A249RYX8 Protein Ycf24.9e-3292.41Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKCFSGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

A0A2H4T233 Protein Ycf24.9e-3292.41Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKCFSGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

A0A6H0ET42 Protein Ycf24.9e-3292.41Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKCFSGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

A0A6J5V726 Uncharacterized protein2.2e-3270.8Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTERILLQDPFVL------------
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKC SGY S+SRLFTER    +  +L            
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTERILLQDPFVL------------

Query:  -----FSLTDGKN
             FSLTDG+N
Subjt:  -----FSLTDGKN

A0A6M3RUH1 Protein Ycf24.9e-3292.41Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKCFSGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

SwissProt top hitse value%identityAlignment
A4GYV4 Protein Ycf23.3e-3391.03Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTE
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKC SGY S+SRLFTE
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTE

A6MM80 Protein Ycf22.5e-3389.87Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSI NEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKC SGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

Q06GT4 Protein Ycf23.3e-3389.87Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQ EIQQLKERSI WDPSFLQTERTEIESDRFPKC SGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

Q09FP8 Protein Ycf26.6e-3491.14Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKC SGY S+SRLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

Q14F97 Protein Ycf23.3e-3391.03Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTE
        DSSQLKGS DQSRDHFDSISNEDSEYHT +NQREIQQLKERSI WDPSFLQTERTEIESDRFPKC SGY S+SRLFTE
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTE

Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core4.4e-2576.54Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSE--YHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQL GS DQ  D FDSISNEDSE  YHT +NQREIQQLKERSI  DPSF+QTE  EIESDRFPK  SGY S+ RLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSE--YHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core4.4e-2576.54Show/hide
Query:  DSSQLKGSDDQSRDHFDSISNEDSE--YHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER
        DSSQL GS DQ  D FDSISNEDSE  YHT +NQREIQQLKERSI  DPSF+QTE  EIESDRFPK  SGY S+ RLFTER
Subjt:  DSSQLKGSDDQSRDHFDSISNEDSE--YHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTAGCCAATTGAAAGGATCTGATGATCAATCCAGAGATCATTTCGATTCCATTAGTAATGAGGATTCGGAGTATCACACATTTCTCAATCAAAGAGAGATTCA
ACAACTAAAAGAAAGATCGATTCATTGGGATCCTTCCTTTCTTCAAACAGAACGAACAGAGATAGAATCAGACCGATTTCCTAAATGCTTTTCTGGATATTGCTCAATAT
CCCGGCTATTCACGGAACGAATCCTCCTACAAGATCCATTCGTTCTTTTCTCTCTGACAGATGGTAAGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTAGCCAATTGAAAGGATCTGATGATCAATCCAGAGATCATTTCGATTCCATTAGTAATGAGGATTCGGAGTATCACACATTTCTCAATCAAAGAGAGATTCA
ACAACTAAAAGAAAGATCGATTCATTGGGATCCTTCCTTTCTTCAAACAGAACGAACAGAGATAGAATCAGACCGATTTCCTAAATGCTTTTCTGGATATTGCTCAATAT
CCCGGCTATTCACGGAACGAATCCTCCTACAAGATCCATTCGTTCTTTTCTCTCTGACAGATGGTAAGAACTGA
Protein sequenceShow/hide protein sequence
MDSSQLKGSDDQSRDHFDSISNEDSEYHTFLNQREIQQLKERSIHWDPSFLQTERTEIESDRFPKCFSGYCSISRLFTERILLQDPFVLFSLTDGKN