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CmoCh12G007270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S3, chloroplastic
Genome locationCmo_Chr12:5528856..5529514
RNA-Seq ExpressionCmoCh12G007270
SyntenyCmoCh12G007270
Gene Ontology termsGO:0005622 - intracellular (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR009019 - K homology domain superfamily, prokaryotic type
IPR036419 - Ribosomal protein S3, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2915877.1 hypothetical protein DAI22_09g073200 [Oryza sativa Japonica Group]3.0e-1035.81Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFAHLK-------------IPKVYKKIKK--------------------RKGNSSTNCQTYRRKRNAMCRMDQRE----
        MGQK NPLGFRLG TQ HHS WFA  K             I ++ K ++K                    R+ N       ++ K     +   ++    
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFAHLK-------------IPKVYKKIKK--------------------RKGNSSTNCQTYRRKRNAMCRMDQRE----

Query:  ---------KEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
                 K  L  +T   K IDYCCYP+RTIYGVLG+KI IFVDE+
Subjt:  ---------KEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

KAF8657241.1 hypothetical protein HU200_060256 [Digitaria exilis]4.3e-0934.97Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFA--------------------HLKIPKVYKK-------------------------IKK-----RKGNSSTNCQTYR
        MGQK NPLGFRLG TQ HHS WFA                    H+  P + KK                         I+K     R+ N       ++
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFA--------------------HLKIPKVYKK-------------------------IKK-----RKGNSSTNCQTYR

Query:  RK-----RNAMCRMDQREKEG------LLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
         K     R AM +  +  K+       L  +T   K IDYCCYP+RTIYGVLG+KI IFV+E+
Subjt:  RK-----RNAMCRMDQREKEG------LLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

RCU61581.1 hypothetical protein SETIT_J015100v2 [Setaria italica]3.3e-0935.58Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFA--------------------HLKIPKVYKK------IKK--RKGNSSTN----------CQTYRRK----------
        MGQK NPLGFRLG TQ HHS WFA                    H+  P + KK      ++K  +K  +S N           + YR+           
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFA--------------------HLKIPKVYKK------IKK--RKGNSSTN----------CQTYRRK----------

Query:  -------RNAMCRMDQREKEG------LLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
               R AM +  +  K+       L  +T   K IDYCCYP+RTIYGVLG+KI IFV+E+
Subjt:  -------RNAMCRMDQREKEG------LLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

TYG72585.1 hypothetical protein ES288_D04G033100v1 [Gossypium darwinii]3.7e-0835.29Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYK------KIKKR---------------------KGNSSTNCQTYRRKRNAMCRMDQREKEGLLYKTFE
        MGQK NPLGFRLG TQ HHSLWFA    PK Y       K KKR                      G         +    A+   +Q + +G+  +   
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYK------KIKKR---------------------KGNSSTNCQTYRRKRNAMCRMDQREKEGLLYKTFE

Query:  -------LKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
                  ++YC Y +R IYGVLGIKI IF++E+
Subjt:  -------LKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

VAH75163.1 unnamed protein product [Triticum turgidum subsp. durum]5.7e-0935.58Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFA--------------------HLKIPKVYKK------IKK--RKGNSSTN----------CQTYRRK----------
        MGQK NPLGFRLG TQ HHS WF                     H+  P + KK      ++K  +K  +S N           + YR+           
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFA--------------------HLKIPKVYKK------IKK--RKGNSSTN----------CQTYRRK----------

Query:  -------RNAMCRMDQREKEG------LLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
               R AM +  +  K+       L  +T   K IDYCCYP+RTIYGVLG+KI IFVDE+
Subjt:  -------RNAMCRMDQREKEG------LLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

TrEMBL top hitse value%identityAlignment
A0A368PFN0 Uncharacterized protein1.6e-0935.58Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFA--------------------HLKIPKVYKK------IKK--RKGNSSTN----------CQTYRRK----------
        MGQK NPLGFRLG TQ HHS WFA                    H+  P + KK      ++K  +K  +S N           + YR+           
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFA--------------------HLKIPKVYKK------IKK--RKGNSSTN----------CQTYRRK----------

Query:  -------RNAMCRMDQREKEG------LLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
               R AM +  +  K+       L  +T   K IDYCCYP+RTIYGVLG+KI IFV+E+
Subjt:  -------RNAMCRMDQREKEG------LLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

A0A3B6NPS9 Uncharacterized protein1.2e-0730.86Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFA----------------HLKIPKVYKKIKKRKGNSSTNCQTYRRKRNAMCRM---------DQREKEGLL--YKTFE
        MGQK NPLGFR G TQ HHS WFA                H+ I   +  + K+KG      +  +++ N++ ++         +   +  +L  Y  F+
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFA----------------HLKIPKVYKKIKKRKGNSSTNCQTYRRKRNAMCRM---------DQREKEGLL--YKTFE

Query:  LK---------------------------------LIDYCCYPVRTIYGVLGIKIRIFVDEQ
        LK                                  IDYCCYP+RTIYG LG+K+ IFVDE+
Subjt:  LK---------------------------------LIDYCCYPVRTIYGVLGIKIRIFVDEQ

A0A446PLE7 Uncharacterized protein2.7e-0935.58Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFA--------------------HLKIPKVYKK------IKK--RKGNSSTN----------CQTYRRK----------
        MGQK NPLGFRLG TQ HHS WF                     H+  P + KK      ++K  +K  +S N           + YR+           
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFA--------------------HLKIPKVYKK------IKK--RKGNSSTN----------CQTYRRK----------

Query:  -------RNAMCRMDQREKEG------LLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
               R AM +  +  K+       L  +T   K IDYCCYP+RTIYGVLG+KI IFVDE+
Subjt:  -------RNAMCRMDQREKEG------LLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

A0A446VDR4 Uncharacterized protein1.2e-0730.86Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFA----------------HLKIPKVYKKIKKRKGNSSTNCQTYRRKRNAMCRM---------DQREKEGLL--YKTFE
        MGQK NPLGFR G TQ HHS WFA                H+ I   +  + K+KG      +  +++ N++ ++         +   +  +L  Y  F+
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFA----------------HLKIPKVYKKIKKRKGNSSTNCQTYRRKRNAMCRM---------DQREKEGLL--YKTFE

Query:  LK---------------------------------LIDYCCYPVRTIYGVLGIKIRIFVDEQ
        LK                                  IDYCCYP+RTIYG LG+K+ IFVDE+
Subjt:  LK---------------------------------LIDYCCYPVRTIYGVLGIKIRIFVDEQ

A0A5D2CWH6 Uncharacterized protein1.8e-0835.29Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYK------KIKKR---------------------KGNSSTNCQTYRRKRNAMCRMDQREKEGLLYKTFE
        MGQK NPLGFRLG TQ HHSLWFA    PK Y       K KKR                      G         +    A+   +Q + +G+  +   
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYK------KIKKR---------------------KGNSSTNCQTYRRKRNAMCRMDQREKEGLLYKTFE

Query:  -------LKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
                  ++YC Y +R IYGVLGIKI IF++E+
Subjt:  -------LKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

SwissProt top hitse value%identityAlignment
A1E9M9 30S ribosomal protein S3, chloroplastic5.5e-0755.32Show/hide
Query:  MCRMDQREKEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
        + R +  ++  L  +T   K IDYCCYP+RTIYGVLG+KI IFVDE+
Subjt:  MCRMDQREKEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

A1E9M9 30S ribosomal protein S3, chloroplastic5.1e-0567.65Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKK
        MGQK NPLGFRLG TQ HHS WFA    PK Y +
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKK

A1EA47 30S ribosomal protein S3, chloroplastic5.5e-0757.45Show/hide
Query:  MCRMDQREKEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
        + R +  +K  L  +T   K IDYCCYP+RTIYGVLG+KI IFVDE+
Subjt:  MCRMDQREKEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

A1EA47 30S ribosomal protein S3, chloroplastic5.1e-0567.65Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKK
        MGQK NPLGFRLG TQ HHS WFA    PK Y +
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKK

A8Y9C5 30S ribosomal protein S3, chloroplastic5.5e-0757.45Show/hide
Query:  MCRMDQREKEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
        + R +  +K  L  +T   K IDYCCYP+RTIYGVLG+KI IFVDE+
Subjt:  MCRMDQREKEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

A8Y9C5 30S ribosomal protein S3, chloroplastic5.1e-0567.65Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKK
        MGQK NPLGFRLG TQ HHS WFA    PK Y +
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKK

Q4VZN0 30S ribosomal protein S3, chloroplastic7.7e-0928.77Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFAHLK----------------------------------------------------IPKVY-----KKIKKRKGNSS
        MGQK NPLGFRLG TQGHHSLWFAH K                                                     PK+      +KI++ + N  
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFAHLK----------------------------------------------------IPKVY-----KKIKKRKGNSS

Query:  TNCQTYRRKRNAMC----------------------------------------------------RMDQRE-------KEGLL-YKTFELKLIDYCCYP
            +  RK N                                                       R+D +E       +EG +  +T   K IDYCCYP
Subjt:  TNCQTYRRKRNAMC----------------------------------------------------RMDQRE-------KEGLL-YKTFELKLIDYCCYP

Query:  VRTIYGVLGIKIRIFVDEQ
        VRTIYG+LGIKI IFVDEQ
Subjt:  VRTIYGVLGIKIRIFVDEQ

Q95H49 30S ribosomal protein S3, chloroplastic2.5e-0757.45Show/hide
Query:  MCRMDQREKEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
        + R +  +K  L  +T   K IDYCCYP+RTIYGVLG+KI IFVDE+
Subjt:  MCRMDQREKEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ

Q95H49 30S ribosomal protein S3, chloroplastic5.1e-0567.65Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKK
        MGQK NPLGFRLG TQ HHS WFA    PK Y +
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKK

Arabidopsis top hitse value%identityAlignment
ATCG00800.1 structural constituent of ribosome5.6e-0770.59Show/hide
Query:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKK
        MGQK NPLGFRLG TQ HHSLWFA    PK Y +
Subjt:  MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKK

ATCG00800.1 structural constituent of ribosome1.3e-0675.76Show/hide
Query:  KTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ
        +T E K IDYC Y VRTIYGVLGIKI IFVDE+
Subjt:  KTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACAAAAAGGAAATCCACTCGGTTTTAGACTTGGTGTAACCCAAGGGCATCATTCTCTTTGGTTTGCGCACCTCAAGATTCCGAAGGTTTACAAGAAGATA
AAAAAGCGGAAAGGGAATTCAAGTACAAATTGCCAGACGTATAGACGGAAAAGAAATGCCATGTGTCGAATGGATCAGAGAGAGAAGGAAGGGTTACTCTACAAA
ACATTCGAGCTCAAATTGATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCATCAAAATTAGGATATTTGTAGACGAGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGACAAAAAGGAAATCCACTCGGTTTTAGACTTGGTGTAACCCAAGGGCATCATTCTCTTTGGTTTGCGCACCTCAAGATTCCGAAGGTTTACAAGAAGATA
AAAAAGCGGAAAGGGAATTCAAGTACAAATTGCCAGACGTATAGACGGAAAAGAAATGCCATGTGTCGAATGGATCAGAGAGAGAAGGAAGGGTTACTCTACAAA
ACATTCGAGCTCAAATTGATTGATTATTGTTGCTATCCAGTTCGAACTATCTATGGGGTATTAGGCATCAAAATTAGGATATTTGTAGACGAGCAATAA
Protein sequenceShow/hide protein sequence
MGQKGNPLGFRLGVTQGHHSLWFAHLKIPKVYKKIKKRKGNSSTNCQTYRRKRNAMCRMDQREKEGLLYKTFELKLIDYCCYPVRTIYGVLGIKIRIFVDEQ