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CmoCh12G007290 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007290
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCytochrome b559 subunit alpha
Genome locationCmo_Chr12:5639213..5639972
RNA-Seq ExpressionCmoCh12G007290
SyntenyCmoCh12G007290
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0009539 - photosystem II reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0043229 - intracellular organelle (cellular component)
GO:0020037 - heme binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR002682 - Photosystem II PsbJ
IPR013082 - Photosystem II cytochrome b559, alpha subunit, lumenal region
IPR037025 - Photosystem II cytochrome b559, alpha subunit superfamily
IPR037267 - Photosystem II PsbJ superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AES88212.1 cytochrome b559 subunit alpha [Medicago truncatula]3.3e-1444.96Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNIS-----------NAVHEKANPNYRAMTQ
        +GSTGERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQGIP I     ++            ++ ++K NPNYRA TQ
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNIS-----------NAVHEKANPNYRAMTQ

Query:  SNPNEHNVEWNRT--VKGIPVIGLVGIFF
        SNPNE NVE NRT    G+ +I ++ + F
Subjt:  SNPNEHNVEWNRT--VKGIPVIGLVGIFF

KAF4396250.1 hypothetical protein F8388_019796 [Cannabis sativa]1.6e-1334.68Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINN---------------WPGNIS------------
        +GSTGERS   +I S        I +  L  + W+    GLAYDVFG P P EYFTESRQG+P I                 W   ++            
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINN---------------WPGNIS------------

Query:  NAVH--------------EKANPNYRAMTQSNPNEHNVEWNR------------------------------------------------------TVKG
         AVH              +K NPN+RA TQ NPNE NVE NR                                                      TV G
Subjt:  NAVH--------------EKANPNYRAMTQSNPNEHNVEWNR------------------------------------------------------TVKG

Query:  IPVIGLVGIFFYGSYSGLGSSL
        I VIGL+GIFFYGSYSGLGSSL
Subjt:  IPVIGLVGIFFYGSYSGLGSSL

KAF4396260.1 hypothetical protein F8388_019806 [Cannabis sativa]1.4e-1246.15Show/hide
Query:  GSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNISNAVHEKANPN--YRAMTQSNPNEHNVE-
        GS GERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQG+P I      +         P+  +R + Q       +  
Subjt:  GSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNISNAVHEKANPN--YRAMTQSNPNEHNVE-

Query:  W-NRTVKGIPVIGLVGIFFYGSYSGLGSSL
        W   TV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  W-NRTVKGIPVIGLVGIFFYGSYSGLGSSL

KAF4400822.1 hypothetical protein G4B88_004365 [Cannabis sativa]1.3e-1539.58Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINN---------------WPGNIS------------
        +GSTGERS   +I S        I +  L  + W+    GLAYDVFG P P E FTESRQG+P I                 W   ++            
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINN---------------WPGNIS------------

Query:  NAVH--------------EKANPNYRAMTQSNPNEHNVEWNR------------------------TVKGIPVIGLVGIFFYGSYSGLGSSL
         AVH              +K N N+RA TQSNPNE NVE NR                        TV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  NAVH--------------EKANPNYRAMTQSNPNEHNVEWNR------------------------TVKGIPVIGLVGIFFYGSYSGLGSSL

XP_027187174.1 LOW QUALITY PROTEIN: uncharacterized protein LOC113785018 [Cicer arietinum]1.0e-1241.78Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNISN--------AVH---------------
        +GSTGERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQGIP I     ++          AVH               
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNISN--------AVH---------------

Query:  -----EKANPNYRAMTQSNPNEHNVEWNRT--VKGIPVIGLVGIFF
             +K NPNYRA TQSNPNE NVE NRT    G+ +I ++ + F
Subjt:  -----EKANPNYRAMTQSNPNEHNVEWNRT--VKGIPVIGLVGIFF

TrEMBL top hitse value%identityAlignment
A0A3Q7X043 Cytochrome b559 subunit alpha5.1e-1341.78Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNISN--------AVH---------------
        +GSTGERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQGIP I     ++          AVH               
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNISN--------AVH---------------

Query:  -----EKANPNYRAMTQSNPNEHNVEWNRT--VKGIPVIGLVGIFF
             +K NPNYRA TQSNPNE NVE NRT    G+ +I ++ + F
Subjt:  -----EKANPNYRAMTQSNPNEHNVEWNRT--VKGIPVIGLVGIFF

A0A7J6HPJ5 Cytochrome b559 subunit alpha7.8e-1434.68Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINN---------------WPGNIS------------
        +GSTGERS   +I S        I +  L  + W+    GLAYDVFG P P EYFTESRQG+P I                 W   ++            
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINN---------------WPGNIS------------

Query:  NAVH--------------EKANPNYRAMTQSNPNEHNVEWNR------------------------------------------------------TVKG
         AVH              +K NPN+RA TQ NPNE NVE NR                                                      TV G
Subjt:  NAVH--------------EKANPNYRAMTQSNPNEHNVEWNR------------------------------------------------------TVKG

Query:  IPVIGLVGIFFYGSYSGLGSSL
        I VIGL+GIFFYGSYSGLGSSL
Subjt:  IPVIGLVGIFFYGSYSGLGSSL

A0A7J6HPK4 Cytochrome b559 subunit alpha6.6e-1346.15Show/hide
Query:  GSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNISNAVHEKANPN--YRAMTQSNPNEHNVE-
        GS GERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQG+P I      +         P+  +R + Q       +  
Subjt:  GSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNISNAVHEKANPN--YRAMTQSNPNEHNVE-

Query:  W-NRTVKGIPVIGLVGIFFYGSYSGLGSSL
        W   TV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  W-NRTVKGIPVIGLVGIFFYGSYSGLGSSL

A0A7J6HZU7 Uncharacterized protein6.4e-1639.58Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINN---------------WPGNIS------------
        +GSTGERS   +I S        I +  L  + W+    GLAYDVFG P P E FTESRQG+P I                 W   ++            
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINN---------------WPGNIS------------

Query:  NAVH--------------EKANPNYRAMTQSNPNEHNVEWNR------------------------TVKGIPVIGLVGIFFYGSYSGLGSSL
         AVH              +K N N+RA TQSNPNE NVE NR                        TV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  NAVH--------------EKANPNYRAMTQSNPNEHNVEWNR------------------------TVKGIPVIGLVGIFFYGSYSGLGSSL

G7JFY7 Cytochrome b559 subunit alpha1.6e-1444.96Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNIS-----------NAVHEKANPNYRAMTQ
        +GSTGERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQGIP I     ++            ++ ++K NPNYRA TQ
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINNWPGNIS-----------NAVHEKANPNYRAMTQ

Query:  SNPNEHNVEWNRT--VKGIPVIGLVGIFF
        SNPNE NVE NRT    G+ +I ++ + F
Subjt:  SNPNEHNVEWNRT--VKGIPVIGLVGIFF

SwissProt top hitse value%identityAlignment
A1EA25 Cytochrome b559 subunit alpha2.8e-0852.24Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINN
        +GSTGERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQGIP I +
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSINN

P56779 Cytochrome b559 subunit alpha2.8e-0853.85Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSI
        +GSTGERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQGIP I
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSI

P59702 Cytochrome b559 subunit alpha2.8e-0853.85Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSI
        +GSTGERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQGIP I
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSI

Q3V518 Cytochrome b559 subunit alpha2.8e-0853.85Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSI
        +GSTGERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQGIP I
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSI

Q70XY9 Cytochrome b559 subunit alpha2.8e-0853.85Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSI
        +GSTGERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQGIP I
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSI

Arabidopsis top hitse value%identityAlignment
ATCG00550.1 photosystem II reaction center protein J5.9e-0688.46Show/hide
Query:  TVKGIPVIGLVGIFFYGSYSGLGSSL
        TV GI VIGL+GIFFYGSYSGLGSSL
Subjt:  TVKGIPVIGLVGIFFYGSYSGLGSSL

ATCG00580.1 photosystem II reaction center protein E2.0e-0953.85Show/hide
Query:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSI
        +GSTGERSF  +I S  +     I +  L  + W+    GLAYDVFG P P EYFTESRQGIP I
Subjt:  AGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWV----GLAYDVFGGPCPTEYFTESRQGIPSI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGTTCAGCAGGAAGCACAGGAGAACGTTCTTTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATT
GTGGGTTGGTTTAGCTTACGATGTTTTTGGCGGCCCTTGTCCAACTGAGTATTTTACAGAGAGCCGACAAGGAATTCCTTCCATTAATAACTGGCCGGGCAATATCAGCA
ATGCAGTTCACGAGAAAGCTAATCCGAATTATCGAGCTATGACACAATCAAATCCGAACGAACACAATGTTGAATGGAATCGTACTGTCAAAGGTATTCCTGTGATCGGT
TTAGTCGGTATTTTCTTTTATGGTTCATATTCTGGATTAGGTTCATCTCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGTTCAGCAGGAAGCACAGGAGAACGTTCTTTTCTTTTGCTGATATTATCACCAGTATTCGATACTGGGTCATTCATAGCATTACTATACCTTCTCTATTCATT
GTGGGTTGGTTTAGCTTACGATGTTTTTGGCGGCCCTTGTCCAACTGAGTATTTTACAGAGAGCCGACAAGGAATTCCTTCCATTAATAACTGGCCGGGCAATATCAGCA
ATGCAGTTCACGAGAAAGCTAATCCGAATTATCGAGCTATGACACAATCAAATCCGAACGAACACAATGTTGAATGGAATCGTACTGTCAAAGGTATTCCTGTGATCGGT
TTAGTCGGTATTTTCTTTTATGGTTCATATTCTGGATTAGGTTCATCTCTGTAA
Protein sequenceShow/hide protein sequence
MWSSAGSTGERSFLLLILSPVFDTGSFIALLYLLYSLWVGLAYDVFGGPCPTEYFTESRQGIPSINNWPGNISNAVHEKANPNYRAMTQSNPNEHNVEWNRTVKGIPVIG
LVGIFFYGSYSGLGSSL