CuGenDBv2

Gene ID	CmoCh12G007300
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
Genome location	Cmo_Chr12:5640560..5645844
RNA-Seq Expression	CmoCh12G007300
Synteny	CmoCh12G007300
Gene Ontology terms	GO:0006633 - fatty acid biosynthetic process (biological process) GO:0015979 - photosynthesis (biological process) GO:0009317 - acetyl-CoA carboxylase complex (cellular component) GO:0009507 - chloroplast (cellular component) GO:0031361 - integral component of thylakoid membrane (cellular component) GO:0003989 - acetyl-CoA carboxylase activity (molecular function) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR000438 - Acetyl-CoA carboxylase carboxyl transferase, beta subunit IPR002325 - Cytochrome f IPR011762 - Acetyl-coenzyme A carboxyltransferase, N-terminal IPR029045 - ClpP/crotonase-like domain superfamily IPR036826 - Cytochrome f large domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA8530378.1 hypothetical protein F0562_005087 [Nyssa sinensis]

4.2e-30

43.13

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFDL----NHL
        +EGS+SLMQMAK SSALYDYQSNK+ FYV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA +RV                   F KGLFDL    N L
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFDL----NHL

Query:  QAFV---------------------PSNQNSIKLHVESFKLDMINLACGMIRISNKCSCVEIFDQQESFKLDMID--LACGVIRISNNVLA--LRYSINK
        +  +                     P     I L      +  + +       + +   +EI   Q +  L   D  L  G +      LA  LR  I +
Subjt:  QAFV---------------------PSNQNSIKLHVESFKLDMINLACGMIRISNKCSCVEIFDQQESFKLDMID--LACGVIRISNNVLA--LRYSINK

Query:  VYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILYLKQLFLFLMICQLKQVLANGKR
         YENPREA   TGRIVCANCHLANKPV +   +        + +       QLKQVLANGK+
Subjt:  VYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILYLKQLFLFLMICQLKQVLANGKR

KAB1202452.1 Apocytochrome f [Morella rubra]

9.3e-30

45.74

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF
        +EGS+SLMQMAK SSALYDYQSNK+ FYV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA     R   FD+    +   +   P     I L     
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF

Query:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRY----SINKVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLIL
         +  I +       + +   +EI     +  L   D       I      L Y     I + YENPREA   TGRIVCANCHLANKPV +   +      
Subjt:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRY----SINKVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLIL

Query:  YLKQLFLFLMICQLKQVLANGKR
          + +       QLKQVLANGK+
Subjt:  YLKQLFLFLMICQLKQVLANGKR

KAB8831624.1 hypothetical protein FH972_026752 [Carpinus fangiana]

2.1e-29

45.74

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF
        +EGS+SLMQMAK SSALYDYQ NK+ FYV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA     R   FD+    +   +   P     I L     
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF

Query:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRY----SINKVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLIL
         +  I +       + +   +EI     +  L   D       I      L Y     I + YENPREA   TGRIVCANCHLANKPV +   +      
Subjt:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRY----SINKVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLIL

Query:  YLKQLFLFLMICQLKQVLANGKR
          + +       QLKQVLANGKR
Subjt:  YLKQLFLFLMICQLKQVLANGKR

KAF4348566.1 hypothetical protein F8388_000245 [Cannabis sativa]

2.1e-29

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRW--------------LTFDKGLFDL----NHL
        +EGS+SLMQMAK SSALYDYQSNK+ FYVAILTSPTTGGVTASFG+LGDIIIAEPNAYI FA +RV                   F KGLFDL    N L
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRW--------------LTFDKGLFDL----NHL

Query:  QAFV-----PSNQ----NSIKLHVESFKLDMINL-----ACGMIRISNKCSCVEIF-------DQQESFKLDMIDLACGVIRISNNVLALRYSINKV---
        +  +     PSN+    NS  L  E  +    +       CG  R   K   V IF       +++   +  M D+    I +   + A R    ++   
Subjt:  QAFV-----PSNQ----NSIKLHVESFKLDMINL-----ACGMIRISNKCSCVEIF-------DQQESFKLDMIDLACGVIRISNNVLALRYSINKV---

Query:  ----------------------------------YENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILYLKQLFLFLMICQLKQVLANGKR
                                          YENPREA   TGRIVCANCHLANKPV +   +        + +       QLKQVLANGK+
Subjt:  ----------------------------------YENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILYLKQLFLFLMICQLKQVLANGKR

TKS04878.1 Apocytochrome f [Populus alba]

1.6e-29

45.5

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF
        +EGS+SLMQMAK SSALYDYQSNK+  YV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA     R   FD+    +   +   P     I L +   
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF

Query:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSIN---KVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILY
         +  I +       + +   +EI   Q +  L   D       I      L Y +    + YENPREA   TGRIVCANCHLANKPV +   +       
Subjt:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSIN---KVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILY

Query:  LKQLFLFLMICQLKQVLANGKR
         + +       QLKQVLANGK+
Subjt:  LKQLFLFLMICQLKQVLANGKR

TrEMBL top hits

e value

%identity

Alignment

A0A2N9H1H6 Cytochrome f

1.0e-29

45.29

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF
        +EGS+SLMQMAK +SALYDYQSNK+ FYV+ILTSPTTGGVTASFG+LGDII+AEPNAYI FA     R   FD+    +   +   P     I L     
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF

Query:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRY----SINKVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLIL
         +  I +       + +   +EI     +  L   D       I      L Y     I + YENPREA   TGRIVCANCHLANKPV +   +      
Subjt:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRY----SINKVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLIL

Query:  YLKQLFLFLMICQLKQVLANGKR
          + +       QLKQVLANGKR
Subjt:  YLKQLFLFLMICQLKQVLANGKR

A0A4U5Q3Z0 Cytochrome f

7.7e-30

45.5

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF
        +EGS+SLMQMAK SSALYDYQSNK+  YV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA     R   FD+    +   +   P     I L +   
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF

Query:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSIN---KVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILY
         +  I +       + +   +EI   Q +  L   D       I      L Y +    + YENPREA   TGRIVCANCHLANKPV +   +       
Subjt:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSIN---KVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILY

Query:  LKQLFLFLMICQLKQVLANGKR
         + +       QLKQVLANGK+
Subjt:  LKQLFLFLMICQLKQVLANGKR

A0A5J5AJK6 Photosystem I assembly protein Ycf4

2.0e-30

43.13

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFDL----NHL
        +EGS+SLMQMAK SSALYDYQSNK+ FYV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA +RV                   F KGLFDL    N L
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFDL----NHL

Query:  QAFV---------------------PSNQNSIKLHVESFKLDMINLACGMIRISNKCSCVEIFDQQESFKLDMID--LACGVIRISNNVLA--LRYSINK
        +  +                     P     I L      +  + +       + +   +EI   Q +  L   D  L  G +      LA  LR  I +
Subjt:  QAFV---------------------PSNQNSIKLHVESFKLDMINLACGMIRISNKCSCVEIFDQQESFKLDMID--LACGVIRISNNVLA--LRYSINK

Query:  VYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILYLKQLFLFLMICQLKQVLANGKR
         YENPREA   TGRIVCANCHLANKPV +   +        + +       QLKQVLANGK+
Subjt:  VYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILYLKQLFLFLMICQLKQVLANGKR

A0A5N6L4X5 Cytochrome f

1.0e-29

45.74

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF
        +EGS+SLMQMAK SSALYDYQ NK+ FYV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA     R   FD+    +   +   P     I L     
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF

Query:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRY----SINKVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLIL
         +  I +       + +   +EI     +  L   D       I      L Y     I + YENPREA   TGRIVCANCHLANKPV +   +      
Subjt:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRY----SINKVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLIL

Query:  YLKQLFLFLMICQLKQVLANGKR
          + +       QLKQVLANGKR
Subjt:  YLKQLFLFLMICQLKQVLANGKR

A0A6A1UQ66 Cytochrome f

4.5e-30

45.74

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF
        +EGS+SLMQMAK SSALYDYQSNK+ FYV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA     R   FD+    +   +   P     I L     
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESF

Query:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRY----SINKVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLIL
         +  I +       + +   +EI     +  L   D       I      L Y     I + YENPREA   TGRIVCANCHLANKPV +   +      
Subjt:  KLDMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRY----SINKVYENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLIL

Query:  YLKQLFLFLMICQLKQVLANGKR
          + +       QLKQVLANGK+
Subjt:  YLKQLFLFLMICQLKQVLANGKR

SwissProt top hits

e value

%identity

Alignment

B1A944 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

2.9e-26

59.02

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFD--------
        +EGS+SLMQMAK SSALYDYQSNK+ FYV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA +RV                   F KGLFD        
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFD--------

Query:  ------LNHLQAFVPSNQNSIK
              L  L  F P NQNSIK
Subjt:  ------LNHLQAFVPSNQNSIK

Q09G37 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

8.5e-26

58.2

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFD--------
        +EGS+SLMQMAK SSA YDYQSNK+ FYV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA +RV                  +F KGLFD        
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFD--------

Query:  ------LNHLQAFVPSNQNSIK
              L  L  F P NQNSIK
Subjt:  ------LNHLQAFVPSNQNSIK

Q09X08 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

5.9e-27

59.84

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRW--------------LTFDKGLFD--------
        +EGS+SLMQMAK SSALYDYQSNK+ FY+AILTSPTTGGVTASFG+LGDIIIAEPNAYI FA +RV                   F KGLFD        
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRW--------------LTFDKGLFD--------

Query:  ------LNHLQAFVPSNQNSIK
              L  L AF P NQNSIK
Subjt:  ------LNHLQAFVPSNQNSIK

Q0G9V3 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

1.1e-25

58.2

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFD--------
        +EGS+SLMQMAK SSALYDYQSNK+ FYV ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA +RV                   F KGLFD        
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFD--------

Query:  ------LNHLQAFVPSNQNSIK
              L  L AF P N+NSI+
Subjt:  ------LNHLQAFVPSNQNSIK

Q2L915 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

2.9e-26

59.02

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFD--------
        +EGS+SLMQMAK SSALYDYQSNK+ FYV+ILTSPTTGGVTASFG+LGDIIIAEPNAYI FA +RV                   F KGLFD        
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV--------------PRWLTFDKGLFD--------

Query:  ------LNHLQAFVPSNQNSIK
              L  L  F P NQNSIK
Subjt:  ------LNHLQAFVPSNQNSIK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00500.1 acetyl-CoA carboxylase carboxyl transferase subunit beta

1.3e-21

77.27

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Query:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV
        +EGS+SLMQMAK SS L DYQS+K+ FY++ILTSPTTGGVTASFG+LGDIIIAEP AYI FA +RV
Subjt:  KEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRV

ATCG00540.1 photosynthetic electron transfer A

4.0e-07

54.1

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Query:  YENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILYLKQLFLFLMICQLKQVLANGKR
        YENPREA   TGRIVCANCHLANKPV +   +        + +       QLKQVLANGK+
Subjt:  YENPREATNPTGRIVCANCHLANKPV-LRFHKGYFLILYLKQLFLFLMICQLKQVLANGKR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGGGTGGAGGAGGCATGCAAGAAGGAAGGAAGTGTGAGCTTGATGCAAATGGCAAAAAGATCTTCTGCTTTATATGATTATCAATCAAATAAAAGATTCTTCTATGT
AGCAATCCTTACATCTCCTACTACGGGTGGGGTGACAGCTAGTTTTGGTATCTTGGGGGATATCATTATTGCCGAACCCAATGCCTACATCACATTTGCGGTCCGGAGGG
TTCCCAGGTGGCTGACATTCGATAAGGGCTTATTCGATCTAAACCACCTCCAGGCTTTCGTTCCCTCGAATCAAAATTCAATCAAGTTGCATGTAGAATCATTCAAGCTC
GACATGATCAATCTTGCTTGTGGAATGATTCGAATCTCAAACAAGTGTTCTTGTGTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTG
TGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTTTATGAAAATCCACGAGAAGCAACCAACCCAACCGGCCGTATTGTCTGCGCCA
ACTGCCATTTAGCTAATAAGCCCGTGTTGAGGTTCCACAAGGGGTACTTCCTGATACTGTATTTGAAGCAGTTGTTCTTATTCCTTATGATATGCCAACTGAAACAAGTT
CTTGCGAATGGAAAAAGGGACCAGAACTTCTTGTTTCAGAGGGTGAATCATCCATCAAAATCAACCATTAACGAGTTCAATTGTCCGAAATGTCTAAATCCGCGTATTTA
TCAACATCAAAATGAAAGAAAGGAGAATAAAGAAAAGGGAACAAAGGATTCTAGAAGGGATGATTGA

mRNA sequence

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Protein sequence

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MGVEEACKKEGSVSLMQMAKRSSALYDYQSNKRFFYVAILTSPTTGGVTASFGILGDIIIAEPNAYITFAVRRVPRWLTFDKGLFDLNHLQAFVPSNQNSIKLHVESFKL
DMINLACGMIRISNKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINKVYENPREATNPTGRIVCANCHLANKPVLRFHKGYFLILYLKQLFLFLMICQLKQV
LANGKRDQNFLFQRVNHPSKSTINEFNCPKCLNPRIYQHQNERKENKEKGTKDSRRDD

CmoCh12G007300 (gene) of Cucurbita moschata (Rifu) v1 genome