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CmoCh12G007310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
Genome locationCmo_Chr12:5645889..5647744
RNA-Seq ExpressionCmoCh12G007310
SyntenyCmoCh12G007310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ALI89111.1 AccD, partial [Apodytes dimidiata]4.9e-1339.6Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH---------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK
        NS+Y  N SK+D+  YDRY+ DT+YSWNNHIN+         + I T+ VSH                 + ++      G  +++    R+ +  ++   
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH---------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK

Query:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
        TW       +SLDPIEFHSEEEPYKDRI+ YQ K GLT  EA+Q G G+
Subjt:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

ALI89112.1 AccD, partial [Cassinopsis madagascariensis]2.2e-1340.27Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHT---------------IRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK
        NS+Y  N SKSD+  YDRY+ DT+YSWNNHIN+         + I T+  SH                 + ++      G  +++    R+ +  ++   
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHT---------------IRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK

Query:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
        TW       +SLDPIEFHSEEEPYKDRI+SYQ K GLT  EA+Q G G+
Subjt:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

ALI89116.1 AccD, partial [Emmotum nitens]5.8e-1440.14Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH-----------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLW
        NS+Y  N SKSD+  YDRY+ DT+YSWNNHIN+         + I T+ VSH                   ++ +     + +++    ++ + +    W
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH-----------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLW

Query:  --MKTWSLSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
          M    +SLDPIEFHSEEEPYKDRI+SYQ K GLT  EA+Q G G+
Subjt:  --MKTWSLSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

ALI89140.1 AccD, partial [Platea latifolia]1.1e-1240.27Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH---------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK
        NS+Y  N SKSD   YDRY+ DT+YSWNNHIN+         + I  + VSH                 + ++      G  +++    R+ +  ++   
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH---------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK

Query:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
        TW        SLDPIEFHSEEEPYKDRI+SYQ K GLT  EA+Q G G+
Subjt:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

KAG6585898.1 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.5e-1495.45Show/hide
Query:  MKTWSLSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTG
        MKTWSLSLDPIEFHSEEEPYKDRIESYQIK GL ADEAIQRGTG
Subjt:  MKTWSLSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTG

TrEMBL top hitse value%identityAlignment
A0A0S0ZFA4 AccD (Fragment)2.8e-1440.14Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH-----------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLW
        NS+Y  N SKSD+  YDRY+ DT+YSWNNHIN+         + I T+ VSH                   ++ +     + +++    ++ + +    W
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH-----------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLW

Query:  --MKTWSLSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
          M    +SLDPIEFHSEEEPYKDRI+SYQ K GLT  EA+Q G G+
Subjt:  --MKTWSLSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

A0A0S0ZFB1 AccD (Fragment)1.1e-1340.27Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHT---------------IRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK
        NS+Y  N SKSD+  YDRY+ DT+YSWNNHIN+         + I T+  SH                 + ++      G  +++    R+ +  ++   
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHT---------------IRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK

Query:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
        TW       +SLDPIEFHSEEEPYKDRI+SYQ K GLT  EA+Q G G+
Subjt:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

A0A0S0ZFB7 AccD (Fragment)2.4e-1339.6Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH---------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK
        NS+Y  N SK+D+  YDRY+ DT+YSWNNHIN+         + I T+ VSH                 + ++      G  +++    R+ +  ++   
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH---------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK

Query:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
        TW       +SLDPIEFHSEEEPYKDRI+ YQ K GLT  EA+Q G G+
Subjt:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

A0A0S0ZFD3 AccD (Fragment)9.1e-1339.6Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHT---------------IRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK
        NS+Y  N S SD+   DRY+ DT+YSWNNHIN+         + I T+ VSH                 + ++      G  +++    R+ +  ++   
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHT---------------IRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK

Query:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
        TW       +SLDPIEFHSEEEPYKDRI+SYQ K GLT  EA+Q G G+
Subjt:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

A0A0S0ZFD8 AccD (Fragment)5.3e-1340.27Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH---------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK
        NS+Y  N SKSD   YDRY+ DT+YSWNNHIN+         + I  + VSH                 + ++      G  +++    R+ +  ++   
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSH---------------TIRVRVTFIVTFGVQVQIVVKVRVPVLGTLWMK

Query:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
        TW        SLDPIEFHSEEEPYKDRI+SYQ K GLT  EA+Q G G+
Subjt:  TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

SwissProt top hitse value%identityAlignment
B1A944 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic5.3e-1030.19Show/hide
Query:  KMVKFEFFEPNSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSV--------------------------------SHTIRVRV
        ++  F +   NS+Y  N SKSD+  YD Y+ DTKYSW NHIN+  +   L+S + +  S+                                ++T R  +
Subjt:  KMVKFEFFEPNSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSV--------------------------------SHTIRVRV

Query:  TFIVT--------------------FGVQVQIVVKVRVPVLGT--LWMK--------------TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGL
        T   +                    +G+  +  +K ++ +      ++K              TW+      +SLDPIEFHSEEEPYKDRI+SYQ K GL
Subjt:  TFIVT--------------------FGVQVQIVVKVRVPVLGT--LWMK--------------TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGL

Query:  TADEAIQRGTGK
        T  EA+Q GTG+
Subjt:  TADEAIQRGTGK

Q06GY8 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic3.4e-0929.85Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHTIRVRVTFIVTFGVQVQIVV------KVRVPVLGT-------------
        N +Y  + SKSD R YDRY+ D KYSWNNHIN+         + I ++  S +     ++I +F     + V       +R    G+             
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHTIRVRVTFIVTFGVQVQIVV------KVRVPVLGT-------------

Query:  ------LWMK------------------------------------------TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTG
              LW++                                          TW       +S+DPIEFHSEEEPY+DRI+SYQ K GLT  EA+Q G G
Subjt:  ------LWMK------------------------------------------TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTG

Query:  K
        +
Subjt:  K

Q09X08 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic1.1e-1032.02Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINA-------------------------------------------------------LTVILGLKSVLI
        NS+Y  N SK+D+  YDRY+ DT+YSWNNHIN+                                                       LT I    + L 
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINA-------------------------------------------------------LTVILGLKSVLI

Query:  LTFSVSHT---------------IRVRVTFIVTFGVQVQIVVKVRVPVL---GTLW--MKTWSLSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRG
        +T    H                ++ ++      G  +++    R+ +L   GT W  M    +SLDPIEF+SEEEPYKDRI+SYQ K GLT  EA+Q G
Subjt:  LTFSVSHT---------------IRVRVTFIVTFGVQVQIVVKVRVPVL---GTLW--MKTWSLSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRG

Query:  TGK
        TGK
Subjt:  TGK

Q0G9V3 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic1.4e-1030.26Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHTIRVRVTFIV--------------------------------------
        N +Y  N SK+D+   D Y+DDT+YSWNNHIN+   I     + I T+ VS +     ++I                                       
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHTIRVRVTFIV--------------------------------------

Query:  -------TFGVQVQIVVKVRVPVLG----------------TLWMKTWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
                +G+  + ++K ++ +                  ++   TW       +SLDPIEFHSEEEPYKDRI+SYQ K GLT  EA+Q G G+
Subjt:  -------TFGVQVQIVVKVRVPVLG----------------TLWMKTWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

Q68RZ7 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic3.4e-0930.26Show/hide
Query:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHTIRVRVTFIVT--------FGVQVQ-----IVVKVRVPVLGT------
        NS+Y+ N S SD+  YD Y+ DT+YSWNN+IN+         + I T  VS +     ++I +         G++ +     + ++     L        
Subjt:  NSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHTIRVRVTFIVT--------FGVQVQ-----IVVKVRVPVLGT------

Query:  LWMK------------------------------------------TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
        LW++                                          TW       +SLDPIEFHSEEEPYKDR++SYQ K GLT  EA+Q G G+
Subjt:  LWMK------------------------------------------TWS------LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK

Arabidopsis top hitse value%identityAlignment
ATCG00500.1 acetyl-CoA carboxylase carboxyl transferase subunit beta2.8e-0660Show/hide
Query:  LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK
        +S DPI+FHS+EEPYK+RI+S Q   GLT  +A+Q GTG+
Subjt:  LSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGCTCTAACCGAGATGGAGATGATTCTGTACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGGGAATGCACTAGGTGCCGGGCAAGAAAGCTCTATGGAAAAAA
GATGGTGAAATTCGAGTTTTTCGAACCGAACTCTACTTATAAAAAGAATCCATCTAAGAGTGATGAGAGAGACTATGATCGTTACATAGATGATACTAAATATAGTTGGA
ATAATCACATTAATGCATTGACGGTTATTTTAGGGCTCAAATCCGTATTGATACTGACTTTTTCAGTGTCACACACAATTAGAGTGAGAGTGACGTTTATAGTGACATTT
GGGGTTCAGGTGCAAATAGTAGTGAAAGTGAGAGTTCCAGTACTTGGGACCCTATGGATGAAGACATGGTCTCTTTCTTTGGATCCCATTGAATTTCATTCGGAGGAGGA
ACCTTATAAAGATCGTATTGAGTCTTATCAAATAAAGAAAGGATTAACAGCTGATGAGGCTATTCAAAGAGGCACAGGTAAA
mRNA sequenceShow/hide mRNA sequence
GTGTTCTGTTAGTGGCTTCCGGTGGTATTCACATTTGGGATATGCCTGCTCTAACCGAGATGGAGATGATTCTGTACTCCAATTCGGCGGAGGAACTTTGGGGCTGGGGG
GAATGCACTAGGTGCCGGGCAAGAAAGCTCTATGGAAAAAAGATGGTGAAATTCGAGTTTTTCGAACCGAACTCTACTTATAAAAAGAATCCATCTAAGAGTGATGAGAG
AGACTATGATCGTTACATAGATGATACTAAATATAGTTGGAATAATCACATTAATGCATTGACGGTTATTTTAGGGCTCAAATCCGTATTGATACTGACTTTTTCAGTGT
CACACACAATTAGAGTGAGAGTGACGTTTATAGTGACATTTGGGGTTCAGGTGCAAATAGTAGTGAAAGTGAGAGTTCCAGTACTTGGGACCCTATGGATGAAGACATGG
TCTCTTTCTTTGGATCCCATTGAATTTCATTCGGAGGAGGAACCTTATAAAGATCGTATTGAGTCTTATCAAATAAAGAAAGGATTAACAGCTGATGAGGCTATTCAAAG
AGGCACAGGTAAA
Protein sequenceShow/hide protein sequence
MPALTEMEMILYSNSAEELWGWGECTRCRARKLYGKKMVKFEFFEPNSTYKKNPSKSDERDYDRYIDDTKYSWNNHINALTVILGLKSVLILTFSVSHTIRVRVTFIVTF
GVQVQIVVKVRVPVLGTLWMKTWSLSLDPIEFHSEEEPYKDRIESYQIKKGLTADEAIQRGTGK