CuGenDBv2

Gene ID	CmoCh12G007350
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Cytochrome f
Genome location	Cmo_Chr12:5680876..5683349
RNA-Seq Expression	CmoCh12G007350
Synteny	CmoCh12G007350
Gene Ontology terms	GO:0006629 - lipid metabolic process (biological process) GO:0019684 - photosynthesis, light reaction (biological process) GO:0022900 - electron transport chain (biological process) GO:0044281 - small molecule metabolic process (biological process) GO:1901564 - organonitrogen compound metabolic process (biological process) GO:1901576 - organic substance biosynthetic process (biological process) GO:0009507 - chloroplast (cellular component) GO:0009521 - photosystem (cellular component) GO:0031361 - integral component of thylakoid membrane (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0016740 - transferase activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002325 - Cytochrome f IPR036826 - Cytochrome f large domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAB5511214.1 hypothetical protein DKX38_030139 [Salix brachista]

3.3e-14

56.41

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Query:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLF
        RVLYMEIRGQG   LTRTD+NLT R      EIEQKAAELA  FL  R+P     GYEN REA   TGRIVCANCHLANKPV     +        + + 
Subjt:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLF

Query:  LFLMICQLKQVLVNGKR
              QLKQVL NGK+
Subjt:  LFLMICQLKQVLVNGKR

KAF8376859.1 hypothetical protein HHK36_031455 [Tetracentron sinense]

3.3e-14

56.41

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Query:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLF
        RVLYMEIRGQG   LTRTD+NLT R      EIEQKAAELA  FL  R+P     GYEN REA   TGRIVCANCHLANKPV     +        + + 
Subjt:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLF

Query:  LFLMICQLKQVLVNGKR
              QLKQVL NGK+
Subjt:  LFLMICQLKQVLVNGKR

KAG6735390.1 hypothetical protein POTOM_062021 [Populus tomentosa]

2.5e-14

55.37

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Query:  FMHGRVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYL
        F   RVLYMEIRGQG   LTRTD+NLT R      EIEQKAAELA  FL  R+P     GYEN REA   TGRIVCANCHLANKPV     +        
Subjt:  FMHGRVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYL

Query:  KQLFLFLMICQLKQVLVNGKR
        + +       QLKQVL NGK+
Subjt:  KQLFLFLMICQLKQVLVNGKR

TKR74942.1 acetyl-CoA carboxylase beta subunit [Populus alba]

2.5e-14

55.37

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Query:  FMHGRVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYL
        F   RVLYMEIRGQG   LTRTD+NLT R      EIEQKAAELA  FL  R+P     GYEN REA   TGRIVCANCHLANKPV     +        
Subjt:  FMHGRVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYL

Query:  KQLFLFLMICQLKQVLVNGKR
        + +       QLKQVL NGK+
Subjt:  KQLFLFLMICQLKQVLVNGKR

TKS04878.1 Apocytochrome f [Populus alba]

2.5e-14

55.37

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Query:  FMHGRVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYL
        F   RVLYMEIRGQG   LTRTD+NLT R      EIEQKAAELA  FL  R+P     GYEN REA   TGRIVCANCHLANKPV     +        
Subjt:  FMHGRVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYL

Query:  KQLFLFLMICQLKQVLVNGKR
        + +       QLKQVL NGK+
Subjt:  KQLFLFLMICQLKQVLVNGKR

TrEMBL top hits

e value

%identity

Alignment

A0A4U5MZQ8 Cytochrome f

1.2e-14

55.37

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Query:  FMHGRVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYL
        F   RVLYMEIRGQG   LTRTD+NLT R      EIEQKAAELA  FL  R+P     GYEN REA   TGRIVCANCHLANKPV     +        
Subjt:  FMHGRVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYL

Query:  KQLFLFLMICQLKQVLVNGKR
        + +       QLKQVL NGK+
Subjt:  KQLFLFLMICQLKQVLVNGKR

A0A4U5Q3Z0 Cytochrome f

1.2e-14

55.37

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Query:  FMHGRVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYL
        F   RVLYMEIRGQG   LTRTD+NLT R      EIEQKAAELA  FL  R+P     GYEN REA   TGRIVCANCHLANKPV     +        
Subjt:  FMHGRVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYL

Query:  KQLFLFLMICQLKQVLVNGKR
        + +       QLKQVL NGK+
Subjt:  KQLFLFLMICQLKQVLVNGKR

A0A5N5IZR4 Cytochrome f

1.6e-14

56.41

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Query:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLF
        RVLYMEIRGQG   LTRTD+NLT R      EIEQKAAELA  FL  R+P     GYEN REA   TGRIVCANCHLANKPV     +        + + 
Subjt:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLF

Query:  LFLMICQLKQVLVNGKR
              QLKQVL NGK+
Subjt:  LFLMICQLKQVLVNGKR

A0A6N2L321 Photosystem I assembly protein Ycf4 (Fragment)

8.5e-16

57.76

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Query:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVSRFHKGYFLILYLKQLFL
        RVLYMEIRGQG   LTRTD+NLT R      EIEQKAAELA  FL  R+P     GYEN REA   TGRIVCANCHLANKPV          + + Q   
Subjt:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVSRFHKGYFLILYLKQLFL

Query:  FLMICQLKQVLVNGKR
             QLKQVL NGK+
Subjt:  FLMICQLKQVLVNGKR

A0A6N2M1I4 Cytochrome f

1.6e-14

56.41

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Query:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLF
        RVLYMEIRGQG   LTRTD+NLT R      EIEQKAAELA  FL  R+P     GYEN REA   TGRIVCANCHLANKPV     +        + + 
Subjt:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLF

Query:  LFLMICQLKQVLVNGKR
              QLKQVL NGK+
Subjt:  LFLMICQLKQVLVNGKR

SwissProt top hits

e value

%identity

Alignment

A0ZZ48 Cytochrome f

2.6e-06

43.59

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Query:  LAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR
        + G  ++   P     GYEN REA   TGRIVCANCHLANKPV     +        + +       QLKQVL NGK+
Subjt:  LAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR

A4GYS4 Cytochrome f

7.0e-07

43.59

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Query:  LAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR
        + G +++   P     GYEN REA   TGRIVCANCHLANKPV     +        + +       QLKQVL NGK+
Subjt:  LAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR

Q14FE4 Cytochrome f

7.0e-07

43.59

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Query:  LAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR
        + G +++   P     GYEN REA   TGRIVCANCHLANKPV     +        + +       QLKQVL NGK+
Subjt:  LAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR

Q2L921 Cytochrome f

2.6e-06

43.59

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Query:  LAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR
        + G  ++   P     GYEN REA   TGRIVCANCHLANKPV     +        + +       QLKQVL NGK+
Subjt:  LAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR

Q9BBR8 Cytochrome f

1.2e-06

40.43

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Query:  KDEIEQKAAELAGLFLAYRIPFA------PWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR
        K+EI +  + L  +++  R P +         GYEN REA   TGRIVCANCHLANKPV     +        + +       Q+KQVL NGKR
Subjt:  KDEIEQKAAELAGLFLAYRIPFA------PWLGYENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00520.1 unfolded protein binding

5.1e-05

68.29

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Query:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELA
        RVLYMEIRGQG   L RTD+N T R      EIEQKAAELA
Subjt:  RVLYMEIRGQG---LTRTDQNLTHRHTREKDEIEQKAAELA

ATCG00540.1 photosynthetic electron transfer A

7.9e-06

50.82

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Query:  YENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR
        YEN REA   TGRIVCANCHLANKPV     +        + +       QLKQVL NGK+
Subjt:  YENLREATNPTGRIVCANCHLANKPVS-RFHKGYFLILYLKQLFLFLMICQLKQVLVNGKR

Sequences

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CDS sequence

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ATGATATCTGAGGAAATGAATTATCAAAGGGTATTTATGCACGGTCGTGTCCTTTATATGGAAATCAGAGGCCAAGGGTTGACTCGTACCGATCAGAATCTGACCCACCG
CCACACGAGAGAGAAAGACGAAATTGAGCAAAAGGCTGCTGAATTGGCTGGCCTATTTCTTGCGTATAGGATTCCATTCGCCCCATGGTTGGGTTATGAAAATCTACGAG
AAGCAACCAACCCAACCGGCCGTATTGTCTGCGCCAACTGCCATTTAGCTAATAAGCCCGTGTCGAGGTTCCACAAGGGGTACTTCCTGATCCTGTATTTGAAGCAGTTG
TTCTTATTCCTTATGATATGCCAACTGAAACAAGTTCTTGTGAATGGGAAAAGGGTTTGA

mRNA sequence

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Protein sequence

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MISEEMNYQRVFMHGRVLYMEIRGQGLTRTDQNLTHRHTREKDEIEQKAAELAGLFLAYRIPFAPWLGYENLREATNPTGRIVCANCHLANKPVSRFHKGYFLILYLKQL
FLFLMICQLKQVLVNGKRV

CmoCh12G007350 (gene) of Cucurbita moschata (Rifu) v1 genome