CuGenDBv2

Gene ID	CmoCh12G007370
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	Cmo_Chr12:5686283..5686890
RNA-Seq Expression	CmoCh12G007370
Synteny	CmoCh12G007370
Gene Ontology terms	GO:0044237 - cellular metabolic process (biological process) GO:0043229 - intracellular organelle (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR000685 - Ribulose bisphosphate carboxylase, large subunit, C-terminal IPR033966 - RuBisCO IPR036376 - Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAB67909.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Cercis canadensis]

6.3e-44

55.94

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LRLSGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG-ELSMRLVTGV
         + K   R                                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG E+   L  GV
Subjt:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG-ELSMRLVTGV

Query:  LN
        LN
Subjt:  LN

AAB67950.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Pericopsis mooniana]

4.8e-44

55.94

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LRLSGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG-ELSMRLVTGV
         + K   R                                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG E+   L  GV
Subjt:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG-ELSMRLVTGV

Query:  LN
        LN
Subjt:  LN

AES88244.1 ribulose bisphosphate carboxylase large chain domain protein [Medicago truncatula]

6.3e-44

60.11

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANT+LAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LR+SGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER---------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMRLVT
         + K   R                      FG G      GNAPGAVANRVALE CVQARNEGRDLAREG   +R  T
Subjt:  ILLKKIER---------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMRLVT

CAN63541.1 hypothetical protein VITISV_025530 [Vitis vinifera]

6.3e-44

60.67

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LRLSGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR
         + K   R                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG   +R
Subjt:  ILLKKIER------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR

KMS93637.1 hypothetical protein BVRB_029470 [Beta vulgaris subsp. vulgaris]

4.8e-44

68.46

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANT+LAHY RDNGLLLHIHRAMH +   +  + + FCVLAK LRLSGGDHI +GT+VGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIERNFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG
           +K E  FG G      GNAPGAVANRVALE CVQARNEGR+LA EG
Subjt:  ILLKKIERNFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG

TrEMBL top hits

e value

%identity

Alignment

A0A0J8B172 Uncharacterized protein

2.3e-44

68.46

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANT+LAHY RDNGLLLHIHRAMH +   +  + + FCVLAK LRLSGGDHI +GT+VGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIERNFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG
           +K E  FG G      GNAPGAVANRVALE CVQARNEGR+LA EG
Subjt:  ILLKKIERNFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG

A5BIT1 Ribulose bisphosphate carboxylase large chain

3.0e-44

60.67

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LRLSGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR
         + K   R                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG   +R
Subjt:  ILLKKIER------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR

G7JG19 Ribulose bisphosphate carboxylase large chain

3.0e-44

60.11

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANT+LAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LR+SGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER---------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMRLVT
         + K   R                      FG G      GNAPGAVANRVALE CVQARNEGRDLAREG   +R  T
Subjt:  ILLKKIER---------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMRLVT

O20297 Ribulose bisphosphate carboxylase large chain (Fragment)

3.0e-44

55.94

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LRLSGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG-ELSMRLVTGV
         + K   R                                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG E+   L  GV
Subjt:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG-ELSMRLVTGV

Query:  LN
        LN
Subjt:  LN

O20319 Ribulose bisphosphate carboxylase large chain (Fragment)

2.3e-44

55.94

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LRLSGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG-ELSMRLVTGV
         + K   R                                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG E+   L  GV
Subjt:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREG-ELSMRLVTGV

Query:  LN
        LN
Subjt:  LN

SwissProt top hits

e value

%identity

Alignment

O19872 Ribulose bisphosphate carboxylase large chain (Fragment)

4.5e-45

55.67

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LRLSGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR
         + K   R                                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG   +R
Subjt:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR

P93869 Ribulose bisphosphate carboxylase large chain (Fragment)

4.5e-45

55.67

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LRLSGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR
         + K   R                                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG   +R
Subjt:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR

P93913 Ribulose bisphosphate carboxylase large chain (Fragment)

4.5e-45

55.15

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELG PIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   +  + + F VLAKGLR+SGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR
         + K   R                                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG   +R
Subjt:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR

Q07209 Ribulose bisphosphate carboxylase large chain (Fragment)

4.5e-45

55.67

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   +  + + F VLAK LRLSGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR
         + K   R                                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG   +R
Subjt:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR

Q8MD78 Ribulose bisphosphate carboxylase large chain (Fragment)

2.0e-45

55.15

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSLAHYCRDNGLLLHIHRAMH +   + ++ + F VLAK LR+SGGDHI AGTVVGKL+G E  ++LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR
         + K   R                                         FG G      GNAPGAVANRVALE CVQARNEGRDLAREG   +R
Subjt:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR

Arabidopsis top hits

e value

%identity

Alignment

AT2G07732.1 Ribulose bisphosphate carboxylase large chain, catalytic domain

1.4e-09

93.1

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAH
        A+FARELGVPIVMHDY TGGFTANTSLAH
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAH

ATCG00490.1 ribulose-bisphosphate carboxylases

3.0e-44

54.64

Show/hide

Query:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM
        A+FARELGVPIVMHDY TGGFTANTSL+HYCRDNGLLLHIHRAMH +   +  + + F VLAK LRLSGGDHI AGTVVGKL+G   S +LGFVDL    
Subjt:  AIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVI--EESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVM

Query:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR
         + K   R                                         FG G      GNAPGAVANRVALE CVQARNEGRDLA EG   +R
Subjt:  ILLKKIER----------------------------------------NFGAG------GNAPGAVANRVALEGCVQARNEGRDLAREGELSMR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTATCTTTGCTCGAGAATTGGGAGTTCCTATCGTAATGCACGACTACTCCACAGGTGGATTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTCT
ACTTCTTCACATTCACCGTGCAATGCATGTCATAGAAGAATCATGGTATGTGCTTCCCTTCTGTGTACTAGCTAAAGGGTTACGTTTGTCTGGTGGAGACCATATTCCCG
CTGGTACCGTAGTAGGTAAACTTCAAGGGAAAGAGACATCACTTTCTTTAGGCTTTGTTGATTTATACTACGTGATGATTCTCTTGAAAAAGATCGAACGGAACTTTGGG
GCTGGGGGGAATGCACCAGGTGCTGTAGCTAACCGAGTAGCTCTAGAAGGATGTGTACAAGCTCGTAATGAGGGACGTGATCTTGCTCGTGAGGGTGAATTATCGATGAG
GCTAGTAACTGGAGTCCTGAACTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAIFARELGVPIVMHDYSTGGFTANTSLAHYCRDNGLLLHIHRAMHVIEESWYVLPFCVLAKGLRLSGGDHIPAGTVVGKLQGKETSLSLGFVDLYYVMILLKKIERNFG
AGGNAPGAVANRVALEGCVQARNEGRDLAREGELSMRLVTGVLN

CmoCh12G007370 (gene) of Cucurbita moschata (Rifu) v1 genome