CuGenDBv2

Gene ID	CmoCh12G007380
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	Cmo_Chr12:5719808..5720942
RNA-Seq Expression	CmoCh12G007380
Synteny	CmoCh12G007380
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051908.1 putative gag protein [Cucumis melo var. makuwa]

1.5e-62

65.26

Show/hide

Query:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+ E +P V D N  ILQAIQGM+E+M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK
         PPF GTTDSE YLQWERKIEHVFDCNT+S+NK+ +LAIAEFTN+A +WY +LKSERRRKEEDPIETWEELKEAMRK FV          +++S+    K
Subjt:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK

Query:  FVAAKRVEAESSI
         VA    E E+ I
Subjt:  FVAAKRVEAESSI

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

3.2e-62

65.26

Show/hide

Query:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+ E +P V D N  ILQAIQGM+E+M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK
         PPF GT DSE YLQWERKIEHVFDCNT+SENK+ +LAIAEFTN+A +WY +LKSERRRKEEDPIETWEELKEAMRK FV          +++S+    K
Subjt:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK

Query:  FVAAKRVEAESSI
         VA    E E+ I
Subjt:  FVAAKRVEAESSI

TYK11702.1 F15O4.13 [Cucumis melo var. makuwa]

3.2e-62

65.26

Show/hide

Query:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+ E +P V D N  ILQAIQGM+E+M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK
         PPF GT DSE YLQWERKIEHVFDCNT+SENK+ +LAIAEFTN+A +WY +LKSERRRKEEDPIETWEELKEAMRK FV          +++S+    K
Subjt:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK

Query:  FVAAKRVEAESSI
         VA    E E+ I
Subjt:  FVAAKRVEAESSI

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

3.2e-62

65.26

Show/hide

Query:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+ E +P V D N  ILQAIQGM+E+M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK
         PPF GT DSE YLQWERKIEHVFDCNT+SENK+ +LAIAEFTN+A +WY +LKSERRRKEEDPIETWEELKEAMRK FV          +++S+    K
Subjt:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK

Query:  FVAAKRVEAESSI
         VA    E E+ I
Subjt:  FVAAKRVEAESSI

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

3.2e-62

65.26

Show/hide

Query:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+ E +P V D N  ILQAIQGM+E+M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK
         PPF GT DSE YLQWERKIEHVFDCNT+SENK+ +LAIAEFTN+A +WY +LKSERRRKEEDPIETWEELKEAMRK FV          +++S+    K
Subjt:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK

Query:  FVAAKRVEAESSI
         VA    E E+ I
Subjt:  FVAAKRVEAESSI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U9D0 Putative gag protein

7.0e-63

65.26

Show/hide

Query:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+ E +P V D N  ILQAIQGM+E+M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK
         PPF GTTDSE YLQWERKIEHVFDCNT+S+NK+ +LAIAEFTN+A +WY +LKSERRRKEEDPIETWEELKEAMRK FV          +++S+    K
Subjt:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK

Query:  FVAAKRVEAESSI
         VA    E E+ I
Subjt:  FVAAKRVEAESSI

A0A5D3BWE8 F15O4.13

1.6e-62

65.26

Show/hide

Query:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+ E +P V D N  ILQAIQGM+E+M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK
         PPF GT DSE YLQWERKIEHVFDCNT+SENK+ +LAIAEFTN+A +WY +LKSERRRKEEDPIETWEELKEAMRK FV          +++S+    K
Subjt:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK

Query:  FVAAKRVEAESSI
         VA    E E+ I
Subjt:  FVAAKRVEAESSI

A0A5D3C3D3 F15O4.13

1.6e-62

65.26

Show/hide

Query:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+ E +P V D N  ILQAIQGM+E+M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK
         PPF GT DSE YLQWERKIEHVFDCNT+SENK+ +LAIAEFTN+A +WY +LKSERRRKEEDPIETWEELKEAMRK FV          +++S+    K
Subjt:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK

Query:  FVAAKRVEAESSI
         VA    E E+ I
Subjt:  FVAAKRVEAESSI

A0A5D3CK70 F15O4.13

1.6e-62

65.26

Show/hide

Query:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+ E +P V D N  ILQAIQGM+E+M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK
         PPF GT DSE YLQWERKIEHVFDCNT+SENK+ +LAIAEFTN+A +WY +LKSERRRKEEDPIETWEELKEAMRK FV          +++S+    K
Subjt:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK

Query:  FVAAKRVEAESSI
         VA    E E+ I
Subjt:  FVAAKRVEAESSI

A0A5D3DRJ1 F15O4.13

1.6e-62

65.26

Show/hide

Query:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK
        MSH+ E +P V D N  ILQAIQGM+E+M E+RQERRAQQQR+ R  QEDEG+      ERQ+ G    R RGRNN A +MQPRRMERVHEDRDGGVKLK
Subjt:  MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIV---VQERQVDG----RWRGRNNHATIMQPRRMERVHEDRDGGVKLK

Query:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK
         PPF GT DSE YLQWERKIEHVFDCNT+SENK+ +LAIAEFTN+A +WY +LKSERRRKEEDPIETWEELKEAMRK FV          +++S+    K
Subjt:  TPPFCGTTDSEAYLQWERKIEHVFDCNTYSENKR-RLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFV---------NRIESMSPKEK

Query:  FVAAKRVEAESSI
         VA    E E+ I
Subjt:  FVAAKRVEAESSI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCACATAATAGAGAAGCAATACCACCAGTACCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAAAGAAG
GGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGTACAAGAAAGACAAGTTGATGGTAGATGGAGAGGAAGAAATAACCATGCAACTATTA
TGCAACCTAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGAGGAGTTAAACTCAAAACCCCACCATTTTGTGGAACAACAGATTCTGAGGCATACTTGCAGTGGGAA
AGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAGGAGACTTGCTATTGCCGAATTTACCAATCATGCTGGTGATTGGTACCAACATCTCAAATC
TGAGAGAAGAAGAAAAGAGGAGGATCCAATAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGTTTTGTGAATAGAATTGAATCAATGTCACCAAAAGAAAAGT
TTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGATGATGAATGTGAGGATCATGATTCACAGCTTGTGGAAGAAATCGCAGCATATGATGATGAGTATTGA

mRNA sequence

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Protein sequence

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MSHNREAIPPVPDLNTTILQAIQGMMEMMMEDRQERRAQQQRQERTLQEDEGIVVQERQVDGRWRGRNNHATIMQPRRMERVHEDRDGGVKLKTPPFCGTTDSEAYLQWE
RKIEHVFDCNTYSENKRRLAIAEFTNHAGDWYQHLKSERRRKEEDPIETWEELKEAMRKSFVNRIESMSPKEKFVAAKRVEAESSIDDECEDHDSQLVEEIAAYDDEY

CmoCh12G007380 (gene) of Cucurbita moschata (Rifu) v1 genome