CuGenDBv2

Gene ID	CmoCh12G007410
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Genome location	Cmo_Chr12:5842195..5842872
RNA-Seq Expression	CmoCh12G007410
Synteny	CmoCh12G007410
Gene Ontology terms	GO:0005622 - intracellular (cellular component) GO:0016020 - membrane (cellular component)
InterPro domains	IPR001694 - NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H IPR018086 - NADH:ubiquinone oxidoreductase, subunit 1, conserved site

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AWI70478.1 NADH dehydrogenase subunit 1 [Leuconotis anceps]

6.0e-14

44.6

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI
        + SSSTVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    TI Y  GW F +P 
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI

Query:  SLLNPL----LTKQTNNFLSTLFTVKEYYISRYYSDTIR
          +  +    +TK     +S   T+ + Y+  + S   R
Subjt:  SLLNPL----LTKQTNNFLSTLFTVKEYYISRYYSDTIR

YP_009164555.1 NADH-plastoquinone oxidoreductase subunit 1 [Sedum oryzifolium]

7.9e-14

45.65

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI
        + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +     I Y  GW F +P 
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI

Query:  SLLNPLLTKQTNNF---LSTLFTVKEYYISRYYSDTIR
         L   L  K    F   +S L T+ + Y+  +   T R
Subjt:  SLLNPLLTKQTNNF---LSTLFTVKEYYISRYYSDTIR

YP_009366311.1 NADH dehydrogenase subunit 1 [Aloysia citrodora]

7.9e-14

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI
        + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    T+ Y  GW F +P 
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI

Query:  SLLNPL--LTKQTNNFLSTL---FTVKEYYISRYYSDTIR
          +  L  +TK++  F +T+    T+ + Y+  + S T R
Subjt:  SLLNPL--LTKQTNNFLSTL---FTVKEYYISRYYSDTIR

YP_009411190.1 NADH-plastoquinone oxidoreductase subunit 1 [Limnopoa meeboldii]

6.0e-14

45.71

Show/hide

Query:  TKSSSTVDIVEAQSREFLAA-----IPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS--------FGKKMDFTPTKNRPTIQYPLGWKFLLP-
        + SSSTVDIVEAQS+  L        PIGF++  +SSLAECERLPFDLPEAEEELVAGYQTE S            ++   +    TI Y  GW F +P 
Subjt:  TKSSSTVDIVEAQSREFLAA-----IPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS--------FGKKMDFTPTKNRPTIQYPLGWKFLLP-

Query:  ISLLNPL-LTKQTNNF---LSTLFTVKEYYISRYYSDTIR
        ISL     + K    F   +  L T+ + Y+  + S TIR
Subjt:  ISLLNPL-LTKQTNNF---LSTLFTVKEYYISRYYSDTIR

YP_009670129.1 NADH dehydrogenase subunit A [Azima tetracantha]

1.6e-14

46.43

Show/hide

Query:  TKSSSTVDIVEAQSREFLAA-----IPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI
        + SSSTVDIVEAQS+  L        PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    T+ Y  GW F +P 
Subjt:  TKSSSTVDIVEAQSREFLAA-----IPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI

Query:  SLLNPLL-TKQTNNFLSTLF----TVKEYYISRYYSDTIR
          +  L   K+ N  L T F    T+ + Y+  + S T R
Subjt:  SLLNPLL-TKQTNNFLSTLF----TVKEYYISRYYSDTIR

TrEMBL top hits

e value

%identity

Alignment

A0A0K0LT06 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic

3.8e-14

45.65

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI
        + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +     I Y  GW F +P 
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI

Query:  SLLNPLLTKQTNNF---LSTLFTVKEYYISRYYSDTIR
         L   L  K    F   +S L T+ + Y+  +   T R
Subjt:  SLLNPLLTKQTNNF---LSTLFTVKEYYISRYYSDTIR

A0A1W6CAZ0 NADH-quinone oxidoreductase subunit H

3.8e-14

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI
        + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    T+ Y  GW F +P 
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI

Query:  SLLNPL--LTKQTNNFLSTL---FTVKEYYISRYYSDTIR
          +  L  +TK++  F +T+    T+ + Y+  + S T R
Subjt:  SLLNPL--LTKQTNNFLSTL---FTVKEYYISRYYSDTIR

A0A220NI03 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic

2.9e-14

45.71

Show/hide

Query:  TKSSSTVDIVEAQSREFLAA-----IPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS--------FGKKMDFTPTKNRPTIQYPLGWKFLLP-
        + SSSTVDIVEAQS+  L        PIGF++  +SSLAECERLPFDLPEAEEELVAGYQTE S            ++   +    TI Y  GW F +P 
Subjt:  TKSSSTVDIVEAQSREFLAA-----IPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS--------FGKKMDFTPTKNRPTIQYPLGWKFLLP-

Query:  ISLLNPL-LTKQTNNF---LSTLFTVKEYYISRYYSDTIR
        ISL     + K    F   +  L T+ + Y+  + S TIR
Subjt:  ISLLNPL-LTKQTNNF---LSTLFTVKEYYISRYYSDTIR

A0A2S1U680 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic

2.9e-14

44.6

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI
        + SSSTVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    TI Y  GW F +P 
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI

Query:  SLLNPL----LTKQTNNFLSTLFTVKEYYISRYYSDTIR
          +  +    +TK     +S   T+ + Y+  + S   R
Subjt:  SLLNPL----LTKQTNNFLSTLFTVKEYYISRYYSDTIR

A0A4Y5PTU8 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic

7.7e-15

46.43

Show/hide

Query:  TKSSSTVDIVEAQSREFLAA-----IPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI
        + SSSTVDIVEAQS+  L        PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    T+ Y  GW F +P 
Subjt:  TKSSSTVDIVEAQSREFLAA-----IPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI

Query:  SLLNPLL-TKQTNNFLSTLF----TVKEYYISRYYSDTIR
          +  L   K+ N  L T F    T+ + Y+  + S T R
Subjt:  SLLNPLL-TKQTNNFLSTLF----TVKEYYISRYYSDTIR

SwissProt top hits

e value

%identity

Alignment

A0A390 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic

2.6e-15

53.54

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP
        + SSSTVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    T+ Y  GW   +P
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP

A1XG10 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic

8.8e-16

46.56

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI
        + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    TI Y  GW   +P 
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI

Query:  SLLNPLLTK-QTNNF----LSTLFTVKEYYI
          +  L  K QT+      +S L T+ + Y+
Subjt:  SLLNPLLTK-QTNNF----LSTLFTVKEYYI

Q0G9Q7 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic

2.0e-15

53.54

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP
        + SSSTVDIVEAQS+       L   PIGF++  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    T+ Y  GW   LP
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP

Q2QD36 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic

2.0e-15

53.92

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI
        + SSSTVDIVEAQS+       L   PIGFVI  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    T+ Y  GW   +P 
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLPI

Query:  SL
         L
Subjt:  SL

Q8S8U5 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic

2.6e-15

53.54

Show/hide

Query:  TKSSSTVDIVEAQSR-EFLA----AIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP
        + SSSTVDIVEAQS+  FL       PIGF++  +SSLAECERLPFDLPEAEEELVAGYQTE S   FG       ++   +    T+ Y  GW   +P
Subjt:  TKSSSTVDIVEAQSR-EFLA----AIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP

Arabidopsis top hits

e value

%identity

Alignment

ATCG01100.1 NADH dehydrogenase family protein

1.2e-15

51.92

Show/hide

Query:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP-
        + S STVDIVEAQS+       L   PIGF+I  +SSLAECERLPFDLPEAEEEL+AGYQTE S   FG       ++   +    T+ Y  GW   +P 
Subjt:  TKSSSTVDIVEAQSRE-----FLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESS---FG-----KKMDFTPTKNRPTIQYPLGWKFLLP-

Query:  ISLL
        IS+L
Subjt:  ISLL

ATMG00516.1 NADH dehydrogenase 1C

4.9e-06

34.62

Show/hide

Query:  CTKSSSTVDIVEAQSREFLAAIPI--GFVILCLSSLAECERLPFDLPEAEEELVAGYQTE-SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISL
        C    ++ +IV AQ ++  + IP+    V+  +S LAE  R PFDLPEAE E VAGY  E SS G  + F              T+ +P GW  +L + +
Subjt:  CTKSSSTVDIVEAQSREFLAAIPI--GFVILCLSSLAECERLPFDLPEAEEELVAGYQTE-SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISL

Query:  LNPL
           +
Subjt:  LNPL

ATMG01120.1 NADH dehydrogenase 1B

4.9e-06

34.62

Show/hide

Query:  CTKSSSTVDIVEAQSREFLAAIPI--GFVILCLSSLAECERLPFDLPEAEEELVAGYQTE-SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISL
        C    ++ +IV AQ ++  + IP+    V+  +S LAE  R PFDLPEAE E VAGY  E SS G  + F              T+ +P GW  +L + +
Subjt:  CTKSSSTVDIVEAQSREFLAAIPI--GFVILCLSSLAECERLPFDLPEAEEELVAGYQTE-SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISL

Query:  LNPL
           +
Subjt:  LNPL

ATMG01275.1 NADH dehydrogenase 1A

4.9e-06

34.62

Show/hide

Query:  CTKSSSTVDIVEAQSREFLAAIPI--GFVILCLSSLAECERLPFDLPEAEEELVAGYQTE-SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISL
        C    ++ +IV AQ ++  + IP+    V+  +S LAE  R PFDLPEAE E VAGY  E SS G  + F              T+ +P GW  +L + +
Subjt:  CTKSSSTVDIVEAQSREFLAAIPI--GFVILCLSSLAECERLPFDLPEAEEELVAGYQTE-SSFGKKMDFTP-------TKNRPTIQYPLGWKFLLPISL

Query:  LNPL
           +
Subjt:  LNPL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCACGGATGAGGGGAAAATCTCATGTACGAAGAGTTCGAGTACAGTTGATATAGTTGAGGCTCAATCAAGGGAATTTCTGGCGGCTATACCTATAGGGTTTGTTAT
TTTGTGTCTTTCTTCCTTAGCAGAATGCGAGAGATTACCTTTTGATTTACCAGAAGCAGAAGAAGAATTAGTAGCGGGTTATCAAACCGAGTCTTCCTTCGGCAAGAAGA
TGGACTTTACCCCGACTAAGAATAGACCAACTATTCAATACCCCCTCGGATGGAAATTTCTTTTACCTATATCTCTCCTTAATCCATTATTAACAAAACAAACAAACAAC
TTCCTTTCAACTCTTTTCACGGTAAAGGAATACTATATTAGTAGATATTATAGTGATACGATAAGGAATCAACTACAAGGAGAATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MATDEGKISCTKSSSTVDIVEAQSREFLAAIPIGFVILCLSSLAECERLPFDLPEAEEELVAGYQTESSFGKKMDFTPTKNRPTIQYPLGWKFLLPISLLNPLLTKQTNN
FLSTLFTVKEYYISRYYSDTIRNQLQGE

CmoCh12G007410 (gene) of Cucurbita moschata (Rifu) v1 genome