; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G007450 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007450
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr12:5850637..5851661
RNA-Seq ExpressionCmoCh12G007450
SyntenyCmoCh12G007450
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]2.3e-7451.44Show/hide
Query:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQERQVD------------------------------------
        MSH+GE VP V D N AILQAIQGM+E+M E+RQER AQQQR+ R  QEDEG+    A ERQ+                                     
Subjt:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQERQVD------------------------------------

Query:  --------DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-----------------------
                DSE YLQW+RKIEHVFDCNT+SENKKM+LAIAEFTN+A +WY +LKSERRRKEEDP ETWEELKEAMRK                       
Subjt:  --------DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-----------------------

Query:  ------------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSP
                                                  RNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FVNRNESM  
Subjt:  ------------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSP

Query:  KEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC
        + +FVAA++VE ESS  KK EASK V+EK+SSIQCWKCKGFGHMSK+C
Subjt:  KEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]2.3e-7451.44Show/hide
Query:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQERQVD------------------------------------
        MSH+GE VP V D N AILQAIQGM+E+M E+RQER AQQQR+ R  QEDEG+    A ERQ+                                     
Subjt:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQERQVD------------------------------------

Query:  --------DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-----------------------
                DSE YLQW+RKIEHVFDCNT+SENKKM+LAIAEFTN+A +WY +LKSERRRKEEDP ETWEELKEAMRK                       
Subjt:  --------DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-----------------------

Query:  ------------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSP
                                                  RNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FVNRNESM  
Subjt:  ------------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSP

Query:  KEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC
        + +FVAA++VE ESS  KK EASK V+EK+SSIQCWKCKGFGHMSK+C
Subjt:  KEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC

XP_022153198.1 uncharacterized protein LOC111020753 [Momordica charantia]5.6e-7652.48Show/hide
Query:  EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQV------------------------------------------
        + VP VP D N  ILQAIQGMMEMMMEDRQER AQQQR+ER LQED+   +  QERQV                                          
Subjt:  EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQV------------------------------------------

Query:  --DDSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------
           D +AYLQW+RKIEHVFDC TYSEN KMRLAIAEFTNH G+WYQ+LK ERRRKE DP +TWEELKEAMR+                            
Subjt:  --DDSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------

Query:  -------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFV
                                             RNPPPYLEDMYHY +KIEDQLKEEKE+SKRYTS+ NT+SNS  WNK  FVNRNES+ PKE+FV
Subjt:  -------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFV

Query:  AAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC
        AAKR+E ESS  K+NEA K V+EK+SSIQCWKCKGFGHMSK+C
Subjt:  AAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC

XP_022158838.1 uncharacterized protein LOC111025303 [Momordica charantia]2.5e-7657.28Show/hide
Query:  EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQVD-----------------------------------------
        + VP VP D NT ILQAIQGMMEMMMEDRQER AQQQR+ER LQED+   +  QERQV                                          
Subjt:  EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQVD-----------------------------------------

Query:  ---DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------
           D +AY QW+RKI HVFDC TYSEN KMRLAIAEFTN AG+WYQ+LK ERRRKEEDP +TWEELKEAMR+                            
Subjt:  ---DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------

Query:  ---RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCK
           RNPP YLEDMYHYA+KIEDQ KEEKE+SKRYT + NT+SNS  W K  FVNRNESM PK +FVAAKR+E ESS  KKNEA K V+E +SSIQCWKCK
Subjt:  ---RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCK

Query:  GFGHMSKEC
        GFGHMSK+C
Subjt:  GFGHMSKEC

XP_022932136.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita moschata]8.3e-9668.05Show/hide
Query:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIVAQERQ------------VDDSEAYLQWKRKIEHVFDCNTYSENKKM
        MSHNGEAVPPVPDLNT ILQAIQGMMEMMMEDRQER AQQQRQERT +  E  V ++R               DSEAYLQW+RKIEHVFDCNTYSENKKM
Subjt:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIVAQERQ------------VDDSEAYLQWKRKIEHVFDCNTYSENKKM

Query:  RLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------------------------------------
        RLAIAEFTNHA  WYQHLKSERRRKEEDP ETWEELKEAMRK                                                          
Subjt:  RLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------------------------------------

Query:  -------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQC
               RNPPPYLEDM HYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKE+FVAAKRVEAESS  KKNEASKTV+EKSSSIQC
Subjt:  -------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQC

Query:  WKCKGFGHMSKEC
        WKCKGFGHMSKEC
Subjt:  WKCKGFGHMSKEC

TrEMBL top hitse value%identityAlignment
A0A5D3C3D3 F15O4.131.1e-7451.44Show/hide
Query:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQERQVD------------------------------------
        MSH+GE VP V D N AILQAIQGM+E+M E+RQER AQQQR+ R  QEDEG+    A ERQ+                                     
Subjt:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQERQVD------------------------------------

Query:  --------DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-----------------------
                DSE YLQW+RKIEHVFDCNT+SENKKM+LAIAEFTN+A +WY +LKSERRRKEEDP ETWEELKEAMRK                       
Subjt:  --------DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-----------------------

Query:  ------------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSP
                                                  RNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FVNRNESM  
Subjt:  ------------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSP

Query:  KEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC
        + +FVAA++VE ESS  KK EASK V+EK+SSIQCWKCKGFGHMSK+C
Subjt:  KEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC

A0A5D3DRJ1 F15O4.131.1e-7451.44Show/hide
Query:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQERQVD------------------------------------
        MSH+GE VP V D N AILQAIQGM+E+M E+RQER AQQQR+ R  QEDEG+    A ERQ+                                     
Subjt:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIV---AQERQVD------------------------------------

Query:  --------DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-----------------------
                DSE YLQW+RKIEHVFDCNT+SENKKM+LAIAEFTN+A +WY +LKSERRRKEEDP ETWEELKEAMRK                       
Subjt:  --------DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK-----------------------

Query:  ------------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSP
                                                  RNPP  +EDMYHYA+KIE QLKEEKE SKRY S+T+TFS+S TWNKD FVNRNESM  
Subjt:  ------------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSP

Query:  KEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC
        + +FVAA++VE ESS  KK EASK V+EK+SSIQCWKCKGFGHMSK+C
Subjt:  KEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC

A0A6J1DGU9 uncharacterized protein LOC1110207532.7e-7652.48Show/hide
Query:  EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQV------------------------------------------
        + VP VP D N  ILQAIQGMMEMMMEDRQER AQQQR+ER LQED+   +  QERQV                                          
Subjt:  EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQV------------------------------------------

Query:  --DDSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------
           D +AYLQW+RKIEHVFDC TYSEN KMRLAIAEFTNH G+WYQ+LK ERRRKE DP +TWEELKEAMR+                            
Subjt:  --DDSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------

Query:  -------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFV
                                             RNPPPYLEDMYHY +KIEDQLKEEKE+SKRYTS+ NT+SNS  WNK  FVNRNES+ PKE+FV
Subjt:  -------------------------------------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFV

Query:  AAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC
        AAKR+E ESS  K+NEA K V+EK+SSIQCWKCKGFGHMSK+C
Subjt:  AAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCKGFGHMSKEC

A0A6J1DX75 uncharacterized protein LOC1110253031.2e-7657.28Show/hide
Query:  EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQVD-----------------------------------------
        + VP VP D NT ILQAIQGMMEMMMEDRQER AQQQR+ER LQED+   +  QERQV                                          
Subjt:  EAVPPVP-DLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEG--IVAQERQVD-----------------------------------------

Query:  ---DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------
           D +AY QW+RKI HVFDC TYSEN KMRLAIAEFTN AG+WYQ+LK ERRRKEEDP +TWEELKEAMR+                            
Subjt:  ---DSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------

Query:  ---RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCK
           RNPP YLEDMYHYA+KIEDQ KEEKE+SKRYT + NT+SNS  W K  FVNRNESM PK +FVAAKR+E ESS  KKNEA K V+E +SSIQCWKCK
Subjt:  ---RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQCWKCK

Query:  GFGHMSKEC
        GFGHMSK+C
Subjt:  GFGHMSKEC

A0A6J1EVI6 LOW QUALITY PROTEIN: uncharacterized protein LOC1114384594.0e-9668.05Show/hide
Query:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIVAQERQ------------VDDSEAYLQWKRKIEHVFDCNTYSENKKM
        MSHNGEAVPPVPDLNT ILQAIQGMMEMMMEDRQER AQQQRQERT +  E  V ++R               DSEAYLQW+RKIEHVFDCNTYSENKKM
Subjt:  MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIVAQERQ------------VDDSEAYLQWKRKIEHVFDCNTYSENKKM

Query:  RLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------------------------------------
        RLAIAEFTNHA  WYQHLKSERRRKEEDP ETWEELKEAMRK                                                          
Subjt:  RLAIAEFTNHAGDWYQHLKSERRRKEEDPKETWEELKEAMRK----------------------------------------------------------

Query:  -------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQC
               RNPPPYLEDM HYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKE+FVAAKRVEAESS  KKNEASKTV+EKSSSIQC
Subjt:  -------RNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEASKTVKEKSSSIQC

Query:  WKCKGFGHMSKEC
        WKCKGFGHMSKEC
Subjt:  WKCKGFGHMSKEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACATAATGGAGAAGCAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAA
AGAACGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGCACAAGAAAGACAAGTTGATGATTCTGAGGCATACTTGCAGTGGAAA
AGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACAT
CTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAAAAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGAAATCCACCGCCATATCTGGAAGACATG
TATCATTATGCTCTCAAAATTGAAGATCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAAC
AAGGATAGTTTTGTGAATAGAAATGAATCAATGTCACCAAAAGAAGAGTTTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGGTAAAAAGAATGAAGCT
TCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACATAATGGAGAAGCAGTACCACCAGTACCAGATCTTAATACAGCCATTCTTCAAGCAATTCAAGGTATGATGGAAATGATGATGGAAGATAGACAAGAA
AGAACGGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGGTATAGTAGCACAAGAAAGACAAGTTGATGATTCTGAGGCATACTTGCAGTGGAAA
AGAAAGATAGAGCATGTGTTTGATTGCAACACCTATAGTGAAAATAAGAAGATGAGACTAGCTATTGCTGAATTTACCAATCATGCTGGTGATTGGTACCAACAT
CTCAAATCCGAGAGAAGAAGAAAAGAGGAGGATCCAAAAGAGACATGGGAAGAACTTAAAGAAGCCATGAGAAAAAGAAATCCACCGCCATATCTGGAAGACATG
TATCATTATGCTCTCAAAATTGAAGATCAATTGAAGGAAGAAAAAGAGCATTCAAAAAGGTACACATCACGAACTAACACCTTTTCAAATTCTAAAACTTGGAAC
AAGGATAGTTTTGTGAATAGAAATGAATCAATGTCACCAAAAGAAGAGTTTGTGGCTGCTAAAAGAGTGGAGGCTGAGAGTTCCATTGGTAAAAAGAATGAAGCT
TCAAAGACGGTAAAGGAGAAGTCTAGTTCTATTCAATGTTGGAAGTGCAAAGGGTTTGGACACATGAGCAAAGAGTGTTAA
Protein sequenceShow/hide protein sequence
MSHNGEAVPPVPDLNTAILQAIQGMMEMMMEDRQERTAQQQRQERTLQEDEGIVAQERQVDDSEAYLQWKRKIEHVFDCNTYSENKKMRLAIAEFTNHAGDWYQH
LKSERRRKEEDPKETWEELKEAMRKRNPPPYLEDMYHYALKIEDQLKEEKEHSKRYTSRTNTFSNSKTWNKDSFVNRNESMSPKEEFVAAKRVEAESSIGKKNEA
SKTVKEKSSSIQCWKCKGFGHMSKEC