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CmoCh12G007480 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007480
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal protein S10
Genome locationCmo_Chr12:5854766..5855967
RNA-Seq ExpressionCmoCh12G007480
SyntenyCmoCh12G007480
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001848 - Ribosomal protein S10
IPR027486 - Ribosomal protein S10 domain
IPR036838 - Ribosomal protein S10 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD25546.1 TPA_asm: hypothetical protein HUJ06_027010 [Nelumbo nucifera]1.3e-3278.1Show/hide
Query:  NKNRKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR
        N+  +    K    K   TKIRIVIRSFDHPFLENHFWGLPPYTRKI LPESRV YTVLRSPHI KKSREQFEME KK+ LVIKTE HELRKK FRLKRR
Subjt:  NKNRKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

QVJ97849.1 hypothetical protein [Apium graveolens]8.7e-3277.14Show/hide
Query:  NKNRKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR
        NK  +    K +  K   TKIRIVIRSFDHPF EN FWGLPPYTRKI LPESRV YTVLRSPHI KKSREQFEME KK+ LVIK ERHELRKK FRLKRR
Subjt:  NKNRKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

YP_003587381.1 ribosomal protein S10 [Cucurbita pepo]1.7e-3293.9Show/hide
Query:  TKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR
        TKI IVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHI KKSREQFEMERKKELLVIKTERHELRKK F LKR+
Subjt:  TKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR

YP_008999584.1 ribosomal protein S10 [Vaccinium macrocarpon]6.6e-3283.33Show/hide
Query:  KRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRRATRRT
        K +  K   TKIRIVIRSFDHPF ENH WGLPPYTRKI LPESRV YTVLRSPHI KKSREQFEME KK+ LVIKTE HELRKKLFRLKRRATRRT
Subjt:  KRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRRATRRT

YP_010035082.1 ribosomal protein S10 [Aconitum kusnezoffii]1.7e-3281.73Show/hide
Query:  RKRSQSKRKTTKSH--DTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRRA
        RKRSQ KRKTTK     TKIRIVIRSFDHPF EN F GLPPYTRKI LPESRV YTVLRSPHI KKSREQFEM+ KK+ LVIKTE H+LRKK FRLKRRA
Subjt:  RKRSQSKRKTTKSH--DTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRRA

Query:  TRRT
        TRRT
Subjt:  TRRT

TrEMBL top hitse value%identityAlignment
A0A4P8PG71 Ribosomal protein S109.4e-3277.14Show/hide
Query:  NKNRKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR
        N+  +    K +  K   TKIRIVIRSFDHPFLENHF GLPPYTRKI LPESRV YTVLRSPHI KKSREQFEME KK++LVIKTE HELRKK FRLKRR
Subjt:  NKNRKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR

Query:  ATRRT
        ATRRT
Subjt:  ATRRT

A0A7D6IQL3 Ribosomal protein S101.2e-3190.24Show/hide
Query:  TKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR
        TKIRIVIRSFDHPF ENHFWGLPPYTRKI LPESRVNYTVLRSPHI KKSREQFEME KK+ LVIKTERHELRKK FRLKR+
Subjt:  TKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR

A0A7L8ZUP8 Ribosomal protein S105.5e-3272.97Show/hide
Query:  GVIRISNKNRKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKL
        G+  +   N KR + K +  K   TKIRIVIRSFDHPF EN+FWGLPPYTRKI LPESRV YTVLRSPHI KKSREQFEME K + LVIKTE HELRKK 
Subjt:  GVIRISNKNRKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKL

Query:  FRLKRRATRRT
        F LKRRATRRT
Subjt:  FRLKRRATRRT

D5I3G7 Ribosomal protein S108.5e-3393.9Show/hide
Query:  TKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR
        TKI IVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHI KKSREQFEMERKKELLVIKTERHELRKK F LKR+
Subjt:  TKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR

V9PBK4 Ribosomal protein S103.2e-3283.33Show/hide
Query:  KRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRRATRRT
        K +  K   TKIRIVIRSFDHPF ENH WGLPPYTRKI LPESRV YTVLRSPHI KKSREQFEME KK+ LVIKTE HELRKKLFRLKRRATRRT
Subjt:  KRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRRATRRT

SwissProt top hitse value%identityAlignment
A8EZL7 30S ribosomal protein S101.4e-0541.67Show/hide
Query:  KIRIVIRSFDHPFLENHFWGLPPYTRK--------IRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVI
        KI+I ++SFDH  L+     +    ++        I LP     +TV RSPH++KKSREQFE+ + K LLVI
Subjt:  KIRIVIRSFDHPFLENHFWGLPPYTRK--------IRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVI

C3PPA8 30S ribosomal protein S101.4e-0541.67Show/hide
Query:  KIRIVIRSFDHPFLENHFWGLPPYTRK--------IRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVI
        KI+I ++SFDH  L+     +    ++        I LP+    +TV RSPH++KKSREQFE+ + K LLVI
Subjt:  KIRIVIRSFDHPFLENHFWGLPPYTRK--------IRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVI

P26869 Ribosomal protein S10, mitochondrial9.4e-1362.03Show/hide
Query:  KIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLK
        KI IVI+SF     EN   GL   TRKI LP+ +  YTVLRSPHI KKSREQFEM   K+LLVI+TE H+LR+KL  LK
Subjt:  KIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLK

P42797 40S ribosomal protein S10, mitochondrial5.1e-1948.78Show/hide
Query:  DQQESLKLDMIDLASGVIR-ISNKN--RKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMER
        D++  +K   I ++   +R +S K    ++  ++  T+K   TKI I IRSF +P  E   W LPP+TRK+ +P++R  YTVLRSPH+ KKSREQFEM  
Subjt:  DQQESLKLDMIDLASGVIR-ISNKN--RKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMER

Query:  KKELLVIKTERHELRKKLFRLKR
        KK  LVIK + HEL KKLF LKR
Subjt:  KKELLVIKTERHELRKKLFRLKR

P51428 Ribosomal protein S10, mitochondrial1.1e-2985.37Show/hide
Query:  TKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR
        TKIRIVIRSFDHPFLENHF GLPPYT KI LPESRV YTVLRSPHI KKSREQFEME KK+ LVIKTE+HELRKK F LKR+
Subjt:  TKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRR

Arabidopsis top hitse value%identityAlignment
AT3G22300.1 ribosomal protein S103.6e-2048.78Show/hide
Query:  DQQESLKLDMIDLASGVIR-ISNKN--RKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMER
        D++  +K   I ++   +R +S K    ++  ++  T+K   TKI I IRSF +P  E   W LPP+TRK+ +P++R  YTVLRSPH+ KKSREQFEM  
Subjt:  DQQESLKLDMIDLASGVIR-ISNKN--RKRSQSKRKTTKSHDTKIRIVIRSFDHPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMER

Query:  KKELLVIKTERHELRKKLFRLKR
        KK  LVIK + HEL KKLF LKR
Subjt:  KKELLVIKTERHELRKKLFRLKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGCGGTGAGGAGCCCACTGGTTGTTGGACTAACCTATGGTGTGTTCCGGCGAAGCGCCAGGTTCTTGGTAAGGAGCGTGAACGGGCGGGGGTTGCATGTAGAAT
CATTCAAGCTCGACATGATCAACCTTGCTTGTGGAGTGATTCGAATCTCAAACAAGTGTTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTG
CTTCTGGAGTGATTCGAATCTCAAACAAAAACAGGAAGAGGAGTCAGTCAAAAAGAAAGACCACCAAAAGTCACGACACCAAGATACGCATAGTGATTCGATCTTTTGAT
CACCCATTTTTGGAAAACCATTTTTGGGGGCTTCCACCTTACACGCGAAAGATTAGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCCCCTCATATTTATAA
AAAGTCCAGAGAACAATTTGAAATGGAAAGAAAGAAAGAATTGTTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAATTATTTCGGTTAAAACGCCGTGCGACTC
GGAGGACATAA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGCGGTGAGGAGCCCACTGGTTGTTGGACTAACCTATGGTGTGTTCCGGCGAAGCGCCAGGTTCTTGGTAAGGAGCGTGAACGGGCGGGGGTTGCATGTAGAAT
CATTCAAGCTCGACATGATCAACCTTGCTTGTGGAGTGATTCGAATCTCAAACAAGTGTTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTG
CTTCTGGAGTGATTCGAATCTCAAACAAAAACAGGAAGAGGAGTCAGTCAAAAAGAAAGACCACCAAAAGTCACGACACCAAGATACGCATAGTGATTCGATCTTTTGAT
CACCCATTTTTGGAAAACCATTTTTGGGGGCTTCCACCTTACACGCGAAAGATTAGATTGCCTGAATCACGAGTCAACTATACTGTGTTACGATCCCCTCATATTTATAA
AAAGTCCAGAGAACAATTTGAAATGGAAAGAAAGAAAGAATTGTTGGTCATAAAAACAGAAAGGCATGAATTGCGCAAGAAATTATTTCGGTTAAAACGCCGTGCGACTC
GGAGGACATAA
Protein sequenceShow/hide protein sequence
MCSGEEPTGCWTNLWCVPAKRQVLGKERERAGVACRIIQARHDQPCLWSDSNLKQVFEIFDQQESLKLDMIDLASGVIRISNKNRKRSQSKRKTTKSHDTKIRIVIRSFD
HPFLENHFWGLPPYTRKIRLPESRVNYTVLRSPHIYKKSREQFEMERKKELLVIKTERHELRKKLFRLKRRATRRT