CuGenDBv2

Gene ID	CmoCh12G007490
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein S19
Genome location	Cmo_Chr12:5856410..5856953
RNA-Seq Expression	CmoCh12G007490
Synteny	CmoCh12G007490
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002222 - Ribosomal protein S19/S15 IPR020934 - Ribosomal protein S19 conserved site IPR023575 - Ribosomal protein S19/S15, superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

YP_003587230.1 ribosomal protein S19 [Citrullus lanatus]

1.6e-41

95.65

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG
        MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKTSVRCKITEGR+GHKFGEFASTRKRRLSRTNIG GKK G
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG

YP_003587264.1 ribosomal protein S19 [Citrullus lanatus]

3.1e-40

94.57

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG
        MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKITEGRVGHKFGEFA TRKRRLSRTNIG GKK G
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG

YP_003587364.1 ribosomal protein S19 [Cucurbita pepo]

1.9e-42

95.79

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ
        MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKITEGRVGHKFGEFA TRKRRLSRTNIG GKKRGESQ
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ

YP_003587380.1 ribosomal protein S19 [Cucurbita pepo]

1.9e-42

95.79

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ
        MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKITEGRVGHKFGEFA TRKRRLSRTNIG GKKRGESQ
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ

YP_009913640.1 ribosomal protein S19 [Luffa acutangula]

4.7e-41

95.65

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG
        MPRRSIWKG FVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIG GKK G
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG

TrEMBL top hits

e value

%identity

Alignment

A0A7D6C0E4 Ribosomal protein S19

2.3e-41

95.65

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG
        MPRRSIWKG FVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIG GKK G
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG

D5I3A0 Ribosomal protein S19

7.9e-42

95.65

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG
        MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKTSVRCKITEGR+GHKFGEFASTRKRRLSRTNIG GKK G
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG

D5I3D4 Ribosomal protein S19

1.5e-40

94.57

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG
        MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKITEGRVGHKFGEFA TRKRRLSRTNIG GKK G
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRG

D5I3F0 Ribosomal protein S19

9.3e-43

95.79

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ
        MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKITEGRVGHKFGEFA TRKRRLSRTNIG GKKRGESQ
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ

D5I3G6 Ribosomal protein S19

9.3e-43

95.79

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ
        MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILP+FVDSSVRIYNGKT VRCKITEGRVGHKFGEFA TRKRRLSRTNIG GKKRGESQ
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQ

SwissProt top hits

e value

%identity

Alignment

P26874 Ribosomal protein S19, mitochondrial

1.9e-16

62.16

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Query:  RSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRK
        RSIWKG FVD  L + KK     +  +IWSRRS ILP+FV    +IYNGK  V  KITE  VGHKFGEFASTRK
Subjt:  RSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRK

P27527 Ribosomal protein S19, mitochondrial

1.6e-39

87.1

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGE
        MPRRSIWKGSFVDAFLLRMKKKRD L NRKIWSRRSSILP+FVD  VRIYNGKT VRCKITEG+VGHKFGEFA TRKRR SRTNIG G+KRG+
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGE

P39697 40S ribosomal protein S19, mitochondrial

1.0e-25

74.03

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRK
        M  RS+WK  FVDAFL+   KK++  LNRKIWSRRS+ILP++VDS+VRIYNGKT VRCKITEG+VGHKFGEFA TRK
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRK

Q2RQW4 30S ribosomal protein S19

1.1e-13

52.63

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Query:  RSIWKGSFVDAFLL-RMKKKRDPLLNR--KIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTR
        RS+WKG F+D +LL + +K R    N   KIWSRRS+I+P+FV  +  +YNG+  V   +TE  VGHKFGEFA TR
Subjt:  RSIWKGSFVDAFLL-RMKKKRDPLLNR--KIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTR

Q8UE22 30S ribosomal protein S19

1.5e-13

52.63

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Query:  RSIWKGSFVDAFLL-RMKKKRDPLLNR--KIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTR
        RS+WKG FVD +LL + +K R+   N   KIWSRRS+ILP+FV  +  +YNG   V   + E  VGHKFGEF+ TR
Subjt:  RSIWKGSFVDAFLL-RMKKKRDPLLNR--KIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTR

Arabidopsis top hits

e value

%identity

Alignment

AT5G47320.1 ribosomal protein S19

7.1e-27

74.03

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Query:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRK
        M  RS+WK  FVDAFL+   KK++  LNRKIWSRRS+ILP++VDS+VRIYNGKT VRCKITEG+VGHKFGEFA TRK
Subjt:  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRK

ATCG00820.1 ribosomal protein S19

1.1e-06

37.33

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Query:  RSIWKGSFVDAFLLRMKKKRDPLLNRKI---WSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFAST
        RS+ K  FV   LLR  +K +    ++I   WSR S+I+P  +  ++ I+NG+  +   I +  VGHK GEF+ T
Subjt:  RSIWKGSFVDAFLLRMKKKRDPLLNRKI---WSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFAST

Sequences

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CDS sequence

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ATGCCACGACGATCTATATGGAAGGGCAGTTTTGTTGATGCATTCCTGTTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAACAGGAAAATTTGGTCACGTAGATCTTC
GATTTTGCCGAAATTCGTTGATAGCTCCGTACGAATTTACAATGGAAAAACTTCTGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCAT
CGACACGGAAACGAAGACTTTCGAGAACAAATATTGGACAGGGAAAAAAAAGGGGAGAAAGTCAAGAATCAGACGAGCCGCCTGACGCATTTACATTTCACCATTCAGAG
CGCAATACATACATTCCTAAGAAGACGAAGAGGGGATCTCTCTCGATCTCAATTGAGACTCGCACCCACCCATTGGGGCAGGCTCGGGGGAACCTGTACCCCCATCTCCT
TTGA

mRNA sequence

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Protein sequence

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MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPKFVDSSVRIYNGKTSVRCKITEGRVGHKFGEFASTRKRRLSRTNIGQGKKRGESQESDEPPDAFTFHHSE
RNTYIPKKTKRGSLSISIETRTHPLGQARGNLYPHLL

CmoCh12G007490 (gene) of Cucurbita moschata (Rifu) v1 genome