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CmoCh12G007500 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007500
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationCmo_Chr12:5862182..5862521
RNA-Seq ExpressionCmoCh12G007500
SyntenyCmoCh12G007500
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051908.1 putative gag protein [Cucumis melo var. makuwa]7.7e-0768.63Show/hide
Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDE
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE

KAA0057113.1 putative gag protein [Cucumis melo var. makuwa]3.5e-0770.59Show/hide
Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE
        MSH+GE V  V DLN  ILQAIQGM+++M E+RQERRAQQQR+ R LQEDE
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]7.7e-0768.63Show/hide
Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDE
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE

XP_022158838.1 uncharacterized protein LOC111025303 [Momordica charantia]5.9e-0778.72Show/hide
Query:  EAVPPVP-DLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE
        + VP VP D NT ILQAIQGMM+MMMEDRQERRAQQQR+ER LQED+
Subjt:  EAVPPVP-DLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE

XP_022932136.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111438459, partial [Cucurbita moschata]1.4e-1381.36Show/hide
Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERT------LQEDEEG
        MSHNGEAVPPVPDLNTTILQAIQGMM+MMMEDRQERRAQQQRQERT      + ED +G
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERT------LQEDEEG

TrEMBL top hitse value%identityAlignment
A0A5A7UMH2 Putative gag protein1.7e-0770.59Show/hide
Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE
        MSH+GE V  V DLN  ILQAIQGM+++M E+RQERRAQQQR+ R LQEDE
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE

A0A5A7VII0 Uncharacterized protein3.7e-0768.63Show/hide
Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDE
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE

A0A5D3DDM5 Uncharacterized protein3.7e-0768.63Show/hide
Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE
        MSH+GE VP V D N  ILQAIQGM+++M E+RQERRAQQQR+ R  QEDE
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE

A0A6J1DX75 uncharacterized protein LOC1110253032.9e-0778.72Show/hide
Query:  EAVPPVP-DLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE
        + VP VP D NT ILQAIQGMM+MMMEDRQERRAQQQR+ER LQED+
Subjt:  EAVPPVP-DLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDE

A0A6J1EVI6 LOW QUALITY PROTEIN: uncharacterized protein LOC1114384597.0e-1481.36Show/hide
Query:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERT------LQEDEEG
        MSHNGEAVPPVPDLNTTILQAIQGMM+MMMEDRQERRAQQQRQERT      + ED +G
Subjt:  MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERT------LQEDEEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAG
GGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGG
AACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCACATAATGGAGAAGCAGTACCACCAGTTCCAGATCTTAATACAACCATTCTTCAAGCAATTCAAGGTATGATGAAAATGATGATGGAAGATAGACAAGAAAGAAG
GGCGCAACAACAAAGACAAGAACGAACATTACAAGAAGATGAAGAAGGATGGAAAGAGTACATGAAGATAGAGATGGGGGAGTTAAACTCAAAATCCCGCCCTTTTGTGG
AACGGCAGATTCTGAGGCATACTTGCAGTGGGAAAGAAAGATAG
Protein sequenceShow/hide protein sequence
MSHNGEAVPPVPDLNTTILQAIQGMMKMMMEDRQERRAQQQRQERTLQEDEEGWKEYMKIEMGELNSKSRPFVERQILRHTCSGKER