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CmoCh12G007560 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007560
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S7, chloroplastic
Genome locationCmo_Chr12:6039299..6041691
RNA-Seq ExpressionCmoCh12G007560
SyntenyCmoCh12G007560
Gene Ontology termsGO:0006091 - generation of precursor metabolites and energy (biological process)
GO:0006412 - translation (biological process)
GO:0015979 - photosynthesis (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000235 - Ribosomal protein S5/S7
IPR023798 - Ribosomal protein S7 domain
IPR036823 - Ribosomal protein S7 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFP87248.1 30S ribosomal protein s7 chloroplastic, partial [Phtheirospermum japonicum]2.5e-1865.59Show/hide
Query:  NKSTICFTSSNTWSNSRYSSKVKARRVSRSSSSHFNRIYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        NK TICFTSSNTWSNSRYSS  K     RS                     GRNMAFK SS+LVDAAKGSGDAIRKKEETH+MAEANRAFAHF
Subjt:  NKSTICFTSSNTWSNSRYSSKVKARRVSRSSSSHFNRIYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

GFP90963.1 30S ribosomal protein s7 chloroplastic [Phtheirospermum japonicum]2.8e-1754.7Show/hide
Query:  LKLDMIDLASGVI-RISNKDDLSVNKSTICFTSSNTWSNSRYSSKVKARRVSRSSSSHFNRIYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRK
        LK + I L+  +I R   K     N+STICFT SNTWSNSRYSSK K     R                      GRNM FK SS+LVDAAKGSGDAIRK
Subjt:  LKLDMIDLASGVI-RISNKDDLSVNKSTICFTSSNTWSNSRYSSKVKARRVSRSSSSHFNRIYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRK

Query:  KEETHRMAEANRAFAHF
        K+ETH+M EANRAFAHF
Subjt:  KEETHRMAEANRAFAHF

KAG7025641.1 Protein OBERON 4, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1994.55Show/hide
Query:  EVACRIIQARHDQPCLWSDSNLKQVFEIFDQQESLKLDMIDLASGVIRISNKFLI
        EVACRIIQARHDQPCLWSDSNLKQVFEIFDQQESLKLDMIDLASGVIRISNK  +
Subjt:  EVACRIIQARHDQPCLWSDSNLKQVFEIFDQQESLKLDMIDLASGVIRISNKFLI

YP_009266751.1 ribosomal protein S7 [Erythroxylum novogranatense]8.1e-1769.66Show/hide
Query:  SSNTWSNSRYSSKVK-ARRVSRSSSSHFNR---IYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        SSNTWSNSRYSSK K  RR+  SSS  F +   +  R     S    GRNMAFKFSS+LVDAAKGSGDAIRKKEETHRMAEANR FAHF
Subjt:  SSNTWSNSRYSSKVK-ARRVSRSSSSHFNR---IYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

YP_009266764.1 ribosomal protein S7 [Erythroxylum novogranatense]8.1e-1769.66Show/hide
Query:  SSNTWSNSRYSSKVK-ARRVSRSSSSHFNR---IYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        SSNTWSNSRYSSK K  RR+  SSS  F +   +  R     S    GRNMAFKFSS+LVDAAKGSGDAIRKKEETHRMAEANR FAHF
Subjt:  SSNTWSNSRYSSKVK-ARRVSRSSSSHFNR---IYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

TrEMBL top hitse value%identityAlignment
A0A192IDE2 Ribosomal protein S73.9e-1769.66Show/hide
Query:  SSNTWSNSRYSSKVK-ARRVSRSSSSHFNR---IYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        SSNTWSNSRYSSK K  RR+  SSS  F +   +  R     S    GRNMAFKFSS+LVDAAKGSGDAIRKKEETHRMAEANR FAHF
Subjt:  SSNTWSNSRYSSKVK-ARRVSRSSSSHFNR---IYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

A0A192IDF5 Ribosomal protein S73.9e-1769.66Show/hide
Query:  SSNTWSNSRYSSKVK-ARRVSRSSSSHFNR---IYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        SSNTWSNSRYSSK K  RR+  SSS  F +   +  R     S    GRNMAFKFSS+LVDAAKGSGDAIRKKEETHRMAEANR FAHF
Subjt:  SSNTWSNSRYSSKVK-ARRVSRSSSSHFNR---IYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

A0A445EF39 Uncharacterized protein2.0e-1664.89Show/hide
Query:  ICFTSSNTWSNSRYSSKVKARRVSRSSSSHFNRIYTRKSTCHSLV-----IRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        +CF S N WSNSRYSSK K  R   SSSS       +    H L+       GRNMAFK SS+LVDAAKGSGDAIRKKEETHRMAEANRAFAHF
Subjt:  ICFTSSNTWSNSRYSSKVKARRVSRSSSSHFNRIYTRKSTCHSLV-----IRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

A0A4Y7JXC4 Ribosomal_S7 domain-containing protein2.6e-1664.52Show/hide
Query:  NKSTICFTSSNTWSNSRYSSKVKARRVSRSSSSHFNRIYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        NKSTI FTSSNTWSNSRYS   + + +S            R     S    GRNMAFK SS+LVDAAKGSGDAIRKKEETH MAEANRAFAHF
Subjt:  NKSTICFTSSNTWSNSRYSSKVKARRVSRSSSSHFNRIYTRKSTCHSLVIRGRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

A0A7J9DZB7 Ribosomal_S7 domain-containing protein1.2e-1375.81Show/hide
Query:  IYTRKSTCHSLVIR------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        IYTRKSTCHSLVIR      G    F+   KLVDAA GSGDAIRKKEETHRMAEANRAFAHF
Subjt:  IYTRKSTCHSLVIR------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

SwissProt top hitse value%identityAlignment
A4QJG0 30S ribosomal protein S7, chloroplastic3.0e-1463.41Show/hide
Query:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        VKARRV    S+H   I    +   +L IR          GRNMAFK SS+LVDAAKGSGDAIRKKEETHRMAEANRAFAHF
Subjt:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

A4QJP4 30S ribosomal protein S7, chloroplastic3.0e-1463.41Show/hide
Query:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        VKARRV    S+H   I    +   +L IR          GRNMAFK SS+LVDAAKGSGDAIRKKEETHRMAEANRAFAHF
Subjt:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

Q4VZK9 30S ribosomal protein S7, chloroplastic6.1e-1564.63Show/hide
Query:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        VKARRV    S+H   I    +   +L IR          GRNMAFKFSS+LVDAAKGSGDAIRKKEETHRMAEANRAFAHF
Subjt:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

Q67ID1 30S ribosomal protein S7, chloroplastic3.0e-1463.41Show/hide
Query:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        VKARRV    S+H   I    +   +L IR          GRNMAFK SS+LVDAAKGSGDAIRKKEETHRMAEANRAFAHF
Subjt:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

Q6KGX3 30S ribosomal protein S7, chloroplastic2.3e-1463.41Show/hide
Query:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        VKARRV  S S+H   I    +    L IR          GRNMAFK SS+LVDAAKGSGDAIRKKEETHRMAEANR FAHF
Subjt:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

Arabidopsis top hitse value%identityAlignment
ATCG00900.1 Ribosomal protein S7p/S5e family protein2.1e-1563.41Show/hide
Query:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        VKARRV    S+H   I    +   +L IR          GRNMAFK SS+LVDAAKGSGDAIRKKEETHRMAEANRAFAHF
Subjt:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF

ATCG01240.1 ribosomal protein S72.1e-1563.41Show/hide
Query:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF
        VKARRV    S+H   I    +   +L IR          GRNMAFK SS+LVDAAKGSGDAIRKKEETHRMAEANRAFAHF
Subjt:  VKARRVSRSSSSHFNRIYTRKSTCHSLVIR----------GRNMAFKFSSKLVDAAKGSGDAIRKKEETHRMAEANRAFAHF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAAGAAAGAAAAGAGACTGTAAAGTCCAGTGTTTGAAGGGAGAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAACCTTGCTTGTGGAGTGATTCGAATCTCAA
ACAAGTGTTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTGCTTCTGGAGTGATTCGAATCTCAAACAAATTTTTAATCGACCCAAACAAAG
TTTCACAAATAGATTCGAGGACGAATCCTCTTGAAGAAGTGGAGAATGATATGAACCAAGAGACATCATTCATACAATATACTTCAATGAAGATAATCATTCAAGCTCGA
CATGATCAACCTTGCTTGTGGAGTGATTCGAATCTCAAACAAGTGTTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTGCTTCTGGAGTGAT
TCGAATCTCAAACAAAGATGACTTATCTGTCAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCTCGATATAGCAGTAAAGTAAAGGCAAGACGTG
TAAGCAGATCATCAAGTTCCCATTTTAATAGGATCTACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGTCGAAATATGGCTTTCAAATTCAGTTCCAAATTA
GTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCAT
mRNA sequenceShow/hide mRNA sequence
TCAAGAAAGAAAAGAGACTGTAAAGTCCAGTGTTTGAAGGGAGAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAACCTTGCTTGTGGAGTGATTCGAATCTCAA
ACAAGTGTTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTGCTTCTGGAGTGATTCGAATCTCAAACAAATTTTTAATCGACCCAAACAAAG
TTTCACAAATAGATTCGAGGACGAATCCTCTTGAAGAAGTGGAGAATGATATGAACCAAGAGACATCATTCATACAATATACTTCAATGAAGATAATCATTCAAGCTCGA
CATGATCAACCTTGCTTGTGGAGTGATTCGAATCTCAAACAAGTGTTTGAGATATTTGATCAACAAGAATCATTGAAGCTAGACATGATCGATCTTGCTTCTGGAGTGAT
TCGAATCTCAAACAAAGATGACTTATCTGTCAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCTCGATATAGCAGTAAAGTAAAGGCAAGACGTG
TAAGCAGATCATCAAGTTCCCATTTTAATAGGATCTACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGTCGAAATATGGCTTTCAAATTCAGTTCCAAATTA
GTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCAT
Protein sequenceShow/hide protein sequence
SRKKRDCKVQCLKGEVACRIIQARHDQPCLWSDSNLKQVFEIFDQQESLKLDMIDLASGVIRISNKFLIDPNKVSQIDSRTNPLEEVENDMNQETSFIQYTSMKIIIQAR
HDQPCLWSDSNLKQVFEIFDQQESLKLDMIDLASGVIRISNKDDLSVNKSTICFTSSNTWSNSRYSSKVKARRVSRSSSSHFNRIYTRKSTCHSLVIRGRNMAFKFSSKL
VDAAKGSGDAIRKKEETHRMAEANRAFAHFH