CuGenDBv2

Gene ID	CmoCh12G007580
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Photosystem II D2 protein, putative
Genome location	Cmo_Chr12:6070470..6071477
RNA-Seq Expression	CmoCh12G007580
Synteny	CmoCh12G007580
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0005622 - intracellular (cellular component) GO:0016020 - membrane (cellular component) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CDY29457.1 BnaC05g32130D [Brassica napus]

3.7e-16

45.31

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++        P+  M +                         DG 
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE

Query:  NRFLPGNPTQAEETYSMVTANRFWYQIF
        N F   NPTQAEETYSMVTANRFW QIF
Subjt:  NRFLPGNPTQAEETYSMVTANRFWYQIF

CDY39486.1 BnaC03g60960D [Brassica napus]

3.7e-16

45.31

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++        P+  M +                         DG 
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE

Query:  NRFLPGNPTQAEETYSMVTANRFWYQIF
        N F   NPTQAEETYSMVTANRFW QIF
Subjt:  NRFLPGNPTQAEETYSMVTANRFWYQIF

RWR97912.1 putative Photosystem II D2 protein [Cinnamomum micranthum f. kanehirae]

3.7e-16

45.31

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++        P+  M +                         DG 
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE

Query:  NRFLPGNPTQAEETYSMVTANRFWYQIF
        N F   NPTQAEETYSMVTANRFW QIF
Subjt:  NRFLPGNPTQAEETYSMVTANRFWYQIF

VDD65225.1 unnamed protein product [Brassica oleracea]

3.7e-16

45.31

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++        P+  M +                         DG 
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE

Query:  NRFLPGNPTQAEETYSMVTANRFWYQIF
        N F   NPTQAEETYSMVTANRFW QIF
Subjt:  NRFLPGNPTQAEETYSMVTANRFWYQIF

VDD65644.1 unnamed protein product [Brassica oleracea]

3.7e-16

45.31

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++        P+  M +                         DG 
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE

Query:  NRFLPGNPTQAEETYSMVTANRFWYQIF
        N F   NPTQAEETYSMVTANRFW QIF
Subjt:  NRFLPGNPTQAEETYSMVTANRFWYQIF

TrEMBL top hits

e value

%identity

Alignment

A0A078EKT7 BnaC05g32120D protein

1.8e-16

45.31

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++        P+  M +                         DG 
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE

Query:  NRFLPGNPTQAEETYSMVTANRFWYQIF
        N F   NPTQAEETYSMVTANRFW QIF
Subjt:  NRFLPGNPTQAEETYSMVTANRFWYQIF

A0A078HPI2 BnaC03g60960D protein

1.8e-16

45.31

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++        P+  M +                         DG 
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE

Query:  NRFLPGNPTQAEETYSMVTANRFWYQIF
        N F   NPTQAEETYSMVTANRFW QIF
Subjt:  NRFLPGNPTQAEETYSMVTANRFWYQIF

A0A3P6H6D7 Uncharacterized protein

1.8e-16

45.31

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++        P+  M +                         DG 
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE

Query:  NRFLPGNPTQAEETYSMVTANRFWYQIF
        N F   NPTQAEETYSMVTANRFW QIF
Subjt:  NRFLPGNPTQAEETYSMVTANRFWYQIF

A0A3P6H9V0 Uncharacterized protein

1.8e-16

45.31

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++        P+  M +                         DG 
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE

Query:  NRFLPGNPTQAEETYSMVTANRFWYQIF
        N F   NPTQAEETYSMVTANRFW QIF
Subjt:  NRFLPGNPTQAEETYSMVTANRFWYQIF

A0A3S3PBZ6 Putative Photosystem II D2 protein

1.8e-16

45.31

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT Q  W        A +   +L ++        P+  M +                         DG 
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYW--------AWLCVMVLLYK-------IPYLKMVM-------------------------DGE

Query:  NRFLPGNPTQAEETYSMVTANRFWYQIF
        N F   NPTQAEETYSMVTANRFW QIF
Subjt:  NRFLPGNPTQAEETYSMVTANRFWYQIF

SwissProt top hits

e value

%identity

Alignment

B5LMM1 Photosystem II D2 protein

1.1e-10

84.85

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT
        MDDWLRRDRF  VGWSGL LFPCAY  VGGWFT
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT

B5LMM1 Photosystem II D2 protein

5.6e-07

80.65

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Query:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF
        DG N F   NPTQAEETYSMVTANRFW QIF
Subjt:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF

P69685 Photosystem II D2 protein

1.1e-10

84.85

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT
        MDDWLRRDRF  VGWSGL LFPCAY  VGGWFT
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT

P69685 Photosystem II D2 protein

5.6e-07

80.65

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Query:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF
        DG N F   NPTQAEETYSMVTANRFW QIF
Subjt:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF

Q0G9W7 Photosystem II D2 protein

1.1e-10

84.85

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT
        MDDWLRRDRF  VGWSGL LFPCAY  VGGWFT
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT

Q0G9W7 Photosystem II D2 protein

5.6e-07

80.65

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Query:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF
        DG N F   NPTQAEETYSMVTANRFW QIF
Subjt:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF

Q4VZN8 Photosystem II D2 protein

1.1e-10

84.85

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT
        MDDWLRRDRF  VGWSGL LFPCAY  VGGWFT
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT

Q4VZN8 Photosystem II D2 protein

5.6e-07

80.65

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Query:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF
        DG N F   NPTQAEETYSMVTANRFW QIF
Subjt:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF

Q8S8X8 Photosystem II D2 protein

1.1e-10

84.85

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT
        MDDWLRRDRF  VGWSGL LFPCAY  VGGWFT
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT

Q8S8X8 Photosystem II D2 protein

5.6e-07

80.65

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Query:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF
        DG N F   NPTQAEETYSMVTANRFW QIF
Subjt:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00270.1 photosystem II reaction center protein D

1.7e-11

81.82

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Query:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT
        MDDWLRRDRF  VGWSGL LFPCAY  +GGWFT
Subjt:  MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFT

ATCG00270.1 photosystem II reaction center protein D

4.0e-08

80.65

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Query:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF
        DG N F   NPTQAEETYSMVTANRFW QIF
Subjt:  DGENRFLPGNPTQAEETYSMVTANRFWYQIF

Sequences

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CDS sequence

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ATGGATGATTGGTTACGGAGGGACCGGTTCGGTCTTGTAGGTTGGTCCGGGCTATTCCTCTTTCCTTGTGCCTATTGTGTCGTAGGAGGTTGGTTTACAGTACAGGTGTA
TTGGGCGTGGCTATGTGTCATGGTGCTACTGTATAAAATCCCTTATTTGAAGATGGTGATGGATGGTGAAAATAGATTCCTTCCGGGTAACCCAACTCAAGCTGAAGAAA
CTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGAGGAAATCCGTGGGAAGATCCTGAATTTGAGACTTTCTATCTATATACACCCAAAATCTTCTCTT
AACCGAAGGGATTCGTACTTTGATGGCGGCTCAAGCAAGATTAGCCTCATGAAAACACACCTTACTTATATTACCTGA

mRNA sequence

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Protein sequence

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MDDWLRRDRFGLVGWSGLFLFPCAYCVVGGWFTVQVYWAWLCVMVLLYKIPYLKMVMDGENRFLPGNPTQAEETYSMVTANRFWYQIFEEIRGKILNLRLSIYIHPKSSL
NRRDSYFDGGSSKISLMKTHLTYIT

CmoCh12G007580 (gene) of Cucurbita moschata (Rifu) v1 genome