; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh12G007660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh12G007660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNADH dehydrogenase [ubiquinone] iron-sulfur protein 2
Genome locationCmo_Chr12:6141641..6142761
RNA-Seq ExpressionCmoCh12G007660
SyntenyCmoCh12G007660
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0016651 - oxidoreductase activity, acting on NAD(P)H (molecular function)
GO:0048038 - quinone binding (molecular function)
GO:0051287 - NAD binding (molecular function)
InterPro domainsIPR001135 - NADH-quinone oxidoreductase, subunit D
IPR022885 - NAD(P)H-quinone oxidoreductase subunit D/H
IPR029014 - [NiFe]-hydrogenase, large subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7117280.1 hypothetical protein RHSIM_RhsimMtG0002200 [Rhododendron simsii]3.9e-4556.32Show/hide
Query:  MVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAIDGTW--------------------------------------------------------
        MVLVLRT+N   SGLW RRNR+SSPGWSTV QNRHRLGAIDGTW                                                        
Subjt:  MVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAIDGTW--------------------------------------------------------

Query:  --------------AAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMESCAV
                      AAPYDVHDQ DPDVPVGTRGD YDR CIRIEEMRQSVRIIVQC NQMPSGMIKADDRKLCPPSR +MKLSMESCAV
Subjt:  --------------AAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMESCAV

KAG4906137.1 hypothetical protein JHK86_057320 [Glycine max]1.3e-4066.67Show/hide
Query:  ATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAIDGT--------------------------W----AAPYDVHDQLDPDVPVGTRGD
        AT+LRMVLVLRT+N F SGLW RRNR+SSPGWSTV QNRHRLGAIDGT                          W    AAPYDVHDQ DPDVPVGTRGD
Subjt:  ATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAIDGT--------------------------W----AAPYDVHDQLDPDVPVGTRGD

Query:  CYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKL
         YDR CIRIEEMRQS+RII+QCPN++PSGMIKADD+ L
Subjt:  CYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKL

KAG6585931.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, partial [Cucurbita argyrosperma subsp. sororia]3.4e-4972.79Show/hide
Query:  MVLVLRTMNEFTSGLWVRRNRISSPGWSTV------------CQNRHRLGAI--------DGTW-------AAPYDVHDQLDPDVPVGTRGDCYDRCCIR
        MVLVLRT+N F SGLWVRRNRISSPGWST               N+ R G +        D +W       AAPYDVHDQLDPDVPVGTRGDCYDRCCIR
Subjt:  MVLVLRTMNEFTSGLWVRRNRISSPGWSTV------------CQNRHRLGAI--------DGTW-------AAPYDVHDQLDPDVPVGTRGDCYDRCCIR

Query:  IEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMESCAV
        IEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMESCAV
Subjt:  IEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMESCAV

OIW06288.1 hypothetical protein TanjilG_19726 [Lupinus angustifolius]1.8e-5083.74Show/hide
Query:  ATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAI-DGTWAAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSG
        AT+LRMVLVLRT+N F SGLW RRNR+SSPGWSTV QNRHRLG   D   AAPYDVHDQ DPDVPVGTRGD YDR CIRIEEMRQS+RI+VQCPNQMPSG
Subjt:  ATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAI-DGTWAAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSG

Query:  MIKADDRKLCPPSRSQMKLSMES
        MIKADDRKLCPPSR +MKLSMES
Subjt:  MIKADDRKLCPPSRSQMKLSMES

YP_009526548.1 hypothetical protein [Ammopiptanthus mongolicus]7.8e-4662.42Show/hide
Query:  ATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAI-------------------------------------------DGTWAAPYDVHD
        AT+LRMVLVLRT+N F SGLW RRNR+SSPGWSTV QNRHRLG +                                           D   AAPYDVHD
Subjt:  ATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAI-------------------------------------------DGTWAAPYDVHD

Query:  QLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES
        Q DPDVPVGTRGD YDR CIRIEEMRQS+RI+VQCPNQMPSGMIKADDRKLCPPSR +MKLSMES
Subjt:  QLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES

TrEMBL top hitse value%identityAlignment
A0A0E0RI14 NAD(P)H dehydrogenase subunit H5.7e-4258.72Show/hide
Query:  MVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLG-------------------------------------------------------AIDGTWA
        MVLVLRT+N F SGLW RRNR+SSPGWSTV QNRHRLG                                                         D   A
Subjt:  MVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLG-------------------------------------------------------AIDGTWA

Query:  APYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES
        APYDVHDQ D DVPVGTRGD YDR CIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRS+MKLSMES
Subjt:  APYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES

A0A251TJN3 Putative niFe hydrogenase-like protein1.8e-3593.75Show/hide
Query:  DGTWAAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMESCAV
        D   AAPYDVHDQLDPDVPVGTRGDCYDR CIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRS+MKLSMESCAV
Subjt:  DGTWAAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMESCAV

A0A385G281 Uncharacterized protein3.8e-4662.42Show/hide
Query:  ATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAI-------------------------------------------DGTWAAPYDVHD
        AT+LRMVLVLRT+N F SGLW RRNR+SSPGWSTV QNRHRLG +                                           D   AAPYDVHD
Subjt:  ATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAI-------------------------------------------DGTWAAPYDVHD

Query:  QLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES
        Q DPDVPVGTRGD YDR CIRIEEMRQS+RI+VQCPNQMPSGMIKADDRKLCPPSR +MKLSMES
Subjt:  QLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES

A0A4P1RAR3 Complex1_49kDa domain-containing protein8.7e-5183.74Show/hide
Query:  ATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAI-DGTWAAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSG
        AT+LRMVLVLRT+N F SGLW RRNR+SSPGWSTV QNRHRLG   D   AAPYDVHDQ DPDVPVGTRGD YDR CIRIEEMRQS+RI+VQCPNQMPSG
Subjt:  ATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAI-DGTWAAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSG

Query:  MIKADDRKLCPPSRSQMKLSMES
        MIKADDRKLCPPSR +MKLSMES
Subjt:  MIKADDRKLCPPSRSQMKLSMES

W9S6E2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 22.7e-3656.13Show/hide
Query:  MVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAIDGTW------------------------------------------------------AA
        MVLV RT+N F SGLW  RNR+SSPGWSTVCQNRHRLG IDGTW                                                      AA
Subjt:  MVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAIDGTW------------------------------------------------------AA

Query:  PYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDR
        PYDVH+QLDP+VPVGTR D YD  CIRIEEMRQSVRIIVQCPNQMPSGMIKADDR
Subjt:  PYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDR

SwissProt top hitse value%identityAlignment
O21270 NADH-ubiquinone oxidoreductase 49 kDa subunit2.8e-2264.79Show/hide
Query:  PYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES
        PYDV+D+L+ D+PVGT+GDCYDR  IR+EEMRQS+++I+QC N+MP+G+IK DD+K+ PPSR  MK SME+
Subjt:  PYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES

P93306 NADH dehydrogenase [ubiquinone] iron-sulfur protein 28.7e-3290.41Show/hide
Query:  AAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES
        AAPYDV+DQLD DVPVGTRGDCYDR CIRIEEMRQS+RIIVQC NQMPSGMIKADDRKLCPPSR +MKLSMES
Subjt:  AAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES

Q0MQG4 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial6.3e-2267.61Show/hide
Query:  PYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES
        PYDV+DQ++ DVPVG+RGDCYDR   R+EEMRQS+RII QC N+MP G IK DD K+ PP R++MK SMES
Subjt:  PYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES

Q36450 NADH dehydrogenase [ubiquinone] iron-sulfur protein 23.5e-3393.15Show/hide
Query:  AAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES
        AAPYDVHDQLDPD+PVGTRGD YDR CIRIEEMRQSVRIIVQC NQMPSGMIKADDRKLCPPSRS+MKLSMES
Subjt:  AAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES

Q9TC96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 23.3e-2370.42Show/hide
Query:  PYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES
        PYDV++++  DVPVGT+GDCYDR   R+EEMRQS+ II+QC NQ+P GMIKADD+K+ PPSRSQMK SMES
Subjt:  PYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES

Arabidopsis top hitse value%identityAlignment
ATMG00510.1 NADH dehydrogenase subunit 76.9e-3285.71Show/hide
Query:  DGTWAAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES
        D   AAPYDVHDQ D DVPVGTRGD YDR CIRIEEMRQS+RIIVQC NQMPSGMIKADDRKLCPPSR +MKLSMES
Subjt:  DGTWAAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSQMKLSMES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTAAGCCTAGTCAAAGATGACTGTTCTAGGTGGGCCACCTACCTTCGAATGGTCTTGGTCCTACGAACCATGAACGAATTCACCTCTGGCCTCTGGGTACGTCG
GAACCGCATAAGTTCACCGGGGTGGAGCACGGTCTGCCAAAATCGACATAGGTTAGGTGCTATTGATGGAACATGGGCAGCACCTTACGATGTTCATGACCAATTGGATC
CTGACGTACCCGTAGGTACCAGAGGAGATTGCTATGATCGTTGTTGTATCCGTATCGAAGAGATGCGACAAAGTGTTCGTATCATTGTGCAATGTCCTAATCAAATGCCT
AGTGGCATGATCAAAGCCGATGATCGTAAGCTATGTCCTCCATCACGATCTCAAATGAAACTATCCATGGAATCGTGTGCCGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTAAGCCTAGTCAAAGATGACTGTTCTAGGTGGGCCACCTACCTTCGAATGGTCTTGGTCCTACGAACCATGAACGAATTCACCTCTGGCCTCTGGGTACGTCG
GAACCGCATAAGTTCACCGGGGTGGAGCACGGTCTGCCAAAATCGACATAGGTTAGGTGCTATTGATGGAACATGGGCAGCACCTTACGATGTTCATGACCAATTGGATC
CTGACGTACCCGTAGGTACCAGAGGAGATTGCTATGATCGTTGTTGTATCCGTATCGAAGAGATGCGACAAAGTGTTCGTATCATTGTGCAATGTCCTAATCAAATGCCT
AGTGGCATGATCAAAGCCGATGATCGTAAGCTATGTCCTCCATCACGATCTCAAATGAAACTATCCATGGAATCGTGTGCCGTGTGA
Protein sequenceShow/hide protein sequence
MCVSLVKDDCSRWATYLRMVLVLRTMNEFTSGLWVRRNRISSPGWSTVCQNRHRLGAIDGTWAAPYDVHDQLDPDVPVGTRGDCYDRCCIRIEEMRQSVRIIVQCPNQMP
SGMIKADDRKLCPPSRSQMKLSMESCAV